Index of /fleming/DKlab/mr/parclip/shrimp

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]0hrep1-15mMm-bam.log2017-12-26 11:48 1.5K 
[ ]0hrep1-15mMm-bam.logw22017-12-24 09:12 73  
[ ]0hrep1-15mMm-mapkap1.log2017-12-21 13:11 9.2K 
[ ]0hrep1-15mMm-mapkap1.sam2017-12-21 13:11 564M 
[ ]0hrep1-15mMm-mapkap1.sam.bam2017-12-21 13:25 86M 
[ ]0hrep1-15mMm-mapkap1.sam.bam.bai2017-12-21 13:25 576  
[ ]0hrep1-15mMm.bam2017-12-25 19:39 4.3G 
[ ]0hrep1-15mMm.bam.md.bam2018-01-03 16:19 4.5G 
[ ]0hrep1-15mMm.bam.md.bam.bt2018-01-03 19:44 11G 
[TXT]0hrep1-15mMm.bam.md.bam.srt.bam2018-01-04 13:34 4.5G 
[TXT]0hrep1-15mMm.bam.md.bam.srt.bam.bai2018-01-04 13:35 4.1M 
[ ]0hrep1-15mMm.bam.sam2018-01-03 16:22 22G 
[ ]0hrep1-15mMm.bam22017-12-24 09:12 0  
[ ]0hrep1-15mMm.log2017-12-21 04:33 8.9K 
[ ]0hrep1-15mMm.out2017-12-21 04:33 39G 
[ ]0hrep1-15mMm2-bam.log2018-03-25 17:08 114  
[ ]0hrep1-15mMm2.bam2018-03-25 17:24 4.3G 
[ ]0hrep1-15mMm2.bam.md.bam2018-03-26 19:05 4.7G 
[ ]0hrep1-15mMm2.bam.md.bt2018-03-26 21:00 22G 
[ ]0hrep2-15mMm-mapkap1.log2017-12-21 13:12 7.6K 
[ ]0hrep2-15mMm-mapkap1.sam2017-12-21 13:12 126M 
[ ]0hrep2-15mMm-mapkap1.sam.bam2017-12-21 13:25 22M 
[ ]0hrep2-15mMm-mapkap1.sam.bam.bai2017-12-21 13:25 576  
[ ]0hrep2-15mMm.bam2017-12-23 05:22 2.3G 
[ ]0hrep2-15mMm.bam.md.bam2018-01-03 16:30 2.4G 
[ ]0hrep2-15mMm.bam.md.bam.bt2018-01-03 19:57 5.2G 
[TXT]0hrep2-15mMm.bam.md.bam.srt.bam2018-01-04 13:45 2.4G 
[TXT]0hrep2-15mMm.bam.md.bam.srt.bam.bai2018-01-04 13:46 4.1M 
[ ]0hrep2-15mMm.bam.sam2018-01-03 16:31 11G 
[ ]0hrep2-15mMm2-bam.log2018-03-24 19:32 114  
[ ]0hrep2-15mMm2.bam2018-03-24 19:40 2.3G 
[ ]0hrep2-bam.log2017-12-23 05:15 114  
[ ]0hrep2.log2017-12-21 09:44 7.6K 
[ ]0hrep2.out2017-12-21 09:44 18G 
[ ]0hrep3-15mMm-bam.log2017-12-26 11:47 6.4K 
[ ]0hrep3-15mMm-mapkap1.log2017-12-21 13:15 11K 
[ ]0hrep3-15mMm-mapkap1.sam2017-12-21 13:15 510M 
[ ]0hrep3-15mMm-mapkap1.sam.bam2017-12-21 13:25 75M 
[ ]0hrep3-15mMm-mapkap1.sam.bam.bai2017-12-21 13:25 576  
[ ]0hrep3-15mMm.bam2017-12-26 03:53 6.0G 
[ ]0hrep3-15mMm.bam.md.bam2018-01-03 16:53 6.2G 
[ ]0hrep3-15mMm.bam.md.bam.bt2018-01-03 20:43 16G 
[TXT]0hrep3-15mMm.bam.md.bam.srt.bam2018-01-04 14:15 6.2G 
[TXT]0hrep3-15mMm.bam.md.bam.srt.bam.bai2018-01-04 14:17 4.1M 
[ ]0hrep3-15mMm.bam.sam2018-01-03 16:57 33G 
[ ]0hrep3-15mMm.log2017-12-21 15:39 10K 
[ ]0hrep3-15mMm.out2017-12-21 15:39 56G 
[ ]0hrep3-15mMm2-bam.log2018-03-25 09:18 114  
[ ]0hrep3-15mMm2.bam2018-03-25 09:41 6.0G 
[DIR]2hr3/2017-12-17 14:28 -  
[ ]2hrep1-15mMm-bam.log2017-12-22 09:06 204K 
[ ]2hrep1-15mMm-mapkap1.log2017-12-21 13:16 8.1K 
[ ]2hrep1-15mMm-mapkap1.sam2017-12-21 13:16 228M 
[ ]2hrep1-15mMm-mapkap1.sam.bam2017-12-21 13:26 39M 
[ ]2hrep1-15mMm-mapkap1.sam.bam.bai2017-12-21 13:26 576  
[ ]2hrep1-15mMm.bam2017-12-22 09:09 3.0G 
[ ]2hrep1-15mMm.bam.md.bam2018-01-03 17:08 3.1G 
[ ]2hrep1-15mMm.bam.md.bam.bt2018-01-03 21:06 7.0G 
[TXT]2hrep1-15mMm.bam.md.bam.srt.bam2018-01-04 14:31 3.1G 
[TXT]2hrep1-15mMm.bam.md.bam.srt.bam.bai2018-01-04 14:32 4.1M 
[ ]2hrep1-15mMm.bam.sam2018-01-03 17:10 14G 
[ ]2hrep1-15mMm.log2017-12-20 18:52 8.0K 
[ ]2hrep1-15mMm.out2017-12-20 18:52 25G 
[ ]2hrep1-15mMm2-bam.log2018-03-24 14:01 114  
[ ]2hrep1-15mMm2.bam2018-03-24 14:12 2.9G 
[ ]2hrep1-15mMm2.bam.md.bam2018-03-26 13:55 3.2G 
[ ]2hrep1-15mMm2.bam.md.bt2018-03-26 15:14 14G 
[ ]2hrep1.ids2018-03-23 16:58 1.1G 
[ ]2hrep1.ids02018-03-23 17:01 116M 
[ ]2hrep1.log2017-12-20 15:28 8.5K 
[ ]2hrep1.mapped2018-03-23 18:16 118M 
[ ]2hrep1.mapped-unk2018-03-23 18:29 99M 
[ ]2hrep1.out2017-12-20 15:28 22G 
[ ]2hrep2-15mMm-bam.log2017-12-22 00:41 369K 
[ ]2hrep2-15mMm-mapkap1.bam22017-12-21 16:18 0  
[ ]2hrep2-15mMm-mapkap1.log2017-12-21 13:17 8.1K 
[ ]2hrep2-15mMm-mapkap1.sam2017-12-21 13:17 304M 
[ ]2hrep2-15mMm-mapkap1.sam.bam2017-12-21 13:26 54M 
[ ]2hrep2-15mMm-mapkap1.sam.bam.bai2017-12-21 13:26 576  
[ ]2hrep2-15mMm.bam2017-12-22 00:45 3.1G 
[ ]2hrep2-15mMm.bam.md.bam2018-01-03 17:21 3.2G 
[ ]2hrep2-15mMm.bam.md.bam.bt2018-01-03 21:27 7.2G 
[TXT]2hrep2-15mMm.bam.md.bam.srt.bam2018-01-04 14:46 3.2G 
[TXT]2hrep2-15mMm.bam.md.bam.srt.bam.bai2018-01-04 14:47 4.1M 
[ ]2hrep2-15mMm.bam.sam2018-01-03 17:23 14G 
[ ]2hrep2-15mMm.log2017-12-20 18:17 8.0K 
[ ]2hrep2-15mMm.out2017-12-20 18:17 25G 
[ ]2hrep2-15mMm2-bam.log2018-03-24 00:27 114  
[ ]2hrep2-15mMm2.bam2018-03-24 00:40 3.4G 
[ ]2hrep2-15mMm2.bam.md.bam2018-03-26 15:30 3.8G 
[ ]2hrep2-15mMm2.bam.md.bt2018-03-26 16:36 14G 
[ ]2hrep2.log2017-12-20 14:29 8.5K 
[ ]2hrep2.out2017-12-20 14:29 22G 
[ ]2hrep2.tc12017-12-20 14:57 406M 
[ ]2hrep3-15mMm-bam.log2017-12-22 05:15 114  
[ ]2hrep3-15mMm-mapkap1.log2017-12-21 13:18 8.7K 
[ ]2hrep3-15mMm-mapkap1.sam2017-12-21 13:18 233M 
[ ]2hrep3-15mMm-mapkap1.sam.bam2017-12-21 13:27 39M 
[ ]2hrep3-15mMm-mapkap1.sam.bam.bai2017-12-21 13:27 576  
[ ]2hrep3-15mMm.bam2017-12-22 05:27 3.8G 
[ ]2hrep3-15mMm.bam.md.bam2018-01-03 17:37 3.9G 
[ ]2hrep3-15mMm.bam.md.bam.bt2018-01-03 21:48 9.2G 
[TXT]2hrep3-15mMm.bam.md.bam.srt.bam2018-01-04 15:05 3.9G 
[TXT]2hrep3-15mMm.bam.md.bam.srt.bam.bai2018-01-04 15:06 4.1M 
[ ]2hrep3-15mMm.bam.sam2018-01-03 17:40 19G 
[ ]2hrep3-15mMm.log2017-12-20 22:51 8.4K 
[ ]2hrep3-15mMm.out2017-12-20 22:51 32G 
[ ]2hrep3-15mMm.tc2017-12-21 10:40 960M 
[ ]2hrep3-15mMm2-bam.log2018-03-24 08:01 114  
[ ]2hrep3-15mMm2.bam2018-03-24 08:15 3.8G 
[ ]2hrep3-15mMm2.bam.md.bam2018-03-26 16:53 4.2G 
[ ]2hrep3-15mMm2.bam.md.bt2018-03-26 18:41 18G 
[ ]6hrep1-15mMm-mapkap1.log2017-12-21 13:21 11K 
[ ]6hrep1-15mMm-mapkap1.sam2017-12-21 13:21 693M 
[ ]6hrep1-15mMm-mapkap1.sam.bam2017-12-21 13:27 92M 
[ ]6hrep1-15mMm-mapkap1.sam.bam.bai2017-12-21 13:27 576  
[ ]6hrep1-15mMm.bam2017-12-26 19:55 5.7G 
[ ]6hrep1-15mMm.bam.md.bam2018-01-03 18:01 6.0G 
[ ]6hrep1-15mMm.bam.md.bam.bt2018-01-03 22:23 15G 
[TXT]6hrep1-15mMm.bam.md.bam.srt.bam2018-01-04 15:34 6.0G 
[TXT]6hrep1-15mMm.bam.md.bam.srt.bam.bai2018-01-04 15:35 4.1M 
[ ]6hrep1-15mMm.bam.sam2018-01-03 18:05 32G 
[ ]6hrep1-15mMm2-bam.log2018-03-26 15:55 114  
[ ]6hrep1-15mMm2.bam2018-03-26 16:14 5.7G 
[ ]6hrep1-bam.log2017-12-26 19:35 114  
[ ]6hrep1.log2017-12-21 01:40 10K 
[ ]6hrep1.out2017-12-21 01:40 55G 
[ ]6hrep2-15mMm-mapkap1.log2017-12-21 13:22 9.5K 
[ ]6hrep2-15mMm-mapkap1.sam2017-12-21 13:22 482M 
[ ]6hrep2-15mMm-mapkap1.sam.bam2017-12-21 13:28 79M 
[ ]6hrep2-15mMm-mapkap1.sam.bam.bai2017-12-21 13:28 576  
[ ]6hrep2-15mMm.bam2017-12-23 02:38 4.9G 
[ ]6hrep2-15mMm.bam.md.bam2018-01-03 18:24 5.1G 
[ ]6hrep2-15mMm.bam.md.bam.bt2018-01-03 22:51 12G 
[TXT]6hrep2-15mMm.bam.md.bam.srt.bam2018-01-04 15:58 5.1G 
[TXT]6hrep2-15mMm.bam.md.bam.srt.bam.bai2018-01-04 16:00 4.1M 
[ ]6hrep2-15mMm.bam.sam2018-01-03 18:28 24G 
[ ]6hrep2-15mMm2-bam.log2018-03-26 03:54 114  
[ ]6hrep2-15mMm2.bam2018-03-26 04:11 4.9G 
[ ]6hrep2-bam.log2017-12-23 02:21 114  
[ ]6hrep2.log2017-12-21 07:18 9.2K 
[ ]6hrep2.out2017-12-21 07:18 42G 
[ ]6hrep3-15mMm-bam.log2017-12-22 17:10 114  
[ ]6hrep3-15mMm-mapkap1.log2017-12-21 13:23 7.8K 
[ ]6hrep3-15mMm-mapkap1.sam2017-12-21 13:23 169M 
[ ]6hrep3-15mMm-mapkap1.sam.bam2017-12-21 13:28 27M 
[ ]6hrep3-15mMm-mapkap1.sam.bam.bai2017-12-21 13:28 576  
[ ]6hrep3-15mMm.bam2017-12-22 17:18 2.5G 
[ ]6hrep3-15mMm.bam.md.bam2018-01-03 18:38 2.6G 
[ ]6hrep3-15mMm.bam.md.bam.bt2018-01-03 23:05 5.9G 
[TXT]6hrep3-15mMm.bam.md.bam.srt.bam2018-01-04 16:11 2.6G 
[TXT]6hrep3-15mMm.bam.md.bam.srt.bam.bai2018-01-04 16:12 4.1M 
[ ]6hrep3-15mMm.bam.sam2018-01-03 18:39 12G 
[ ]6hrep3-15mMm.log2017-12-21 07:31 7.7K 
[ ]6hrep3-15mMm.out2017-12-21 07:31 21G 
[ ]6hrep3-15mMm2-bam.log2018-03-26 07:23 114  
[ ]6hrep3-15mMm2.bam2018-03-26 07:31 2.5G 
[ ]IFN-15mMm-mapkap1.log2017-12-21 13:24 7.6K 
[ ]IFN-15mMm-mapkap1.sam2017-12-21 13:24 115M 
[ ]IFN-15mMm-mapkap1.sam.bam2017-12-21 13:57 21M 
[ ]IFN-15mMm-mapkap1.sam.bam.bai2017-12-21 13:57 576  
[ ]IFN-15mMm.bam2017-12-23 08:11 2.5G 
[ ]IFN-15mMm.bam.bai2018-03-23 15:35 4.1M 
[ ]IFN-15mMm.bam.md.bam2018-01-03 15:09 2.6G 
[ ]IFN-15mMm.bam.md.bam.bt2018-01-03 17:40 5.4G 
[ ]IFN-15mMm.bam.md.bam.flt.sam2018-01-03 00:41 7.3G 
[ ]IFN-15mMm.bam.md.bam.sam2017-12-31 13:05 11G 
[TXT]IFN-15mMm.bam.md.bam.srt.bam2018-01-04 16:24 2.6G 
[TXT]IFN-15mMm.bam.md.bam.srt.bam.bai2018-01-04 16:25 4.1M 
[ ]IFN-15mMm.bam.sam2018-01-03 15:11 11G 
[ ]IFN-15mMm2-bam.log2018-03-27 17:32 73  
[ ]IFN-15mMm2-bam.log22018-03-27 22:39 7.6K 
[ ]IFN-15mMm2.bam2018-03-27 17:33 92  
[ ]IFN-15mMm2.sam2018-03-27 22:39 19G 
[ ]IFN-bam.log2017-12-23 08:03 114  
[ ]IFN.log2017-12-21 12:15 7.6K 
[ ]IFN.out2017-12-21 12:15 19G 
[ ]IGG-15mMm-mapkap1.log2017-12-21 13:25 7.6K 
[ ]IGG-15mMm-mapkap1.sam2017-12-21 13:25 140M 
[ ]IGG-15mMm-mapkap1.sam.bam2017-12-21 13:57 23M 
[ ]IGG-15mMm-mapkap1.sam.bam.bai2017-12-21 13:57 576  
[ ]IGG-15mMm.bam2017-12-23 10:57 2.2G 
[ ]IGG-15mMm.bam.md.bam2018-01-03 15:19 2.3G 
[ ]IGG-15mMm.bam.md.bam.bt2018-01-03 17:52 5.3G 
[TXT]IGG-15mMm.bam.md.bam.srt.bam2018-01-04 16:35 2.3G 
[TXT]IGG-15mMm.bam.md.bam.srt.bam.bai2018-01-04 16:35 4.1M 
[ ]IGG-15mMm.bam.sam2018-01-03 15:20 11G 
[ ]IGG-15mMm2-bam.log2018-03-30 20:33 7.6K 
[ ]IGG-15mMm2.bam2018-03-27 12:23 92  
[ ]IGG-15mMm2.sam2018-03-30 20:33 10G 
[ ]IGG-bam.log2017-12-23 10:50 114  
[ ]IGG.log2017-12-21 15:15 7.6K 
[ ]IGG.out2017-12-21 15:15 19G 
[ ]IL4-15mMm-bam.log2017-12-22 12:21 114  
[ ]IL4-15mMm-mapkap1.log2017-12-21 13:26 9.8K 
[ ]IL4-15mMm-mapkap1.sam2017-12-21 13:26 362M 
[ ]IL4-15mMm-mapkap1.sam.bam2017-12-21 13:57 61M 
[ ]IL4-15mMm-mapkap1.sam.bam.bai2017-12-21 13:57 576  
[ ]IL4-15mMm.bam2017-12-22 12:38 5.1G 
[ ]IL4-15mMm.bam.md.bam2018-01-03 15:39 5.3G 
[ ]IL4-15mMm.bam.md.bam.bt2018-01-03 18:20 13G 
[TXT]IL4-15mMm.bam.md.bam.srt.bam2018-01-04 17:00 5.3G 
[TXT]IL4-15mMm.bam.md.bam.srt.bam.bai2018-01-04 17:01 4.1M 
[ ]IL4-15mMm.bam.sam2018-01-03 15:42 25G 
[ ]IL4-15mMm.log2017-12-21 22:06 9.4K 
[ ]IL4-15mMm.out2017-12-21 22:06 45G 
[ ]IL4-15mMm2-bam.log2018-03-26 03:59 114  
[ ]IL4-15mMm2.bam2018-03-26 04:20 5.2G 
[ ]IL4-15mMm2.bam.md.bam2018-03-26 21:25 5.7G 
[ ]IL4-15mMm2.bam.md.bt2018-03-26 23:41 25G 
[TXT]README-mapkap1.txt2017-12-21 14:08 1.7K 
[TXT]README-paralyzer.txt2017-12-26 12:42 125  
[TXT]README-re-shrmip.txt2018-03-30 15:32 5.8K 
[TXT]README-shrmip.txt2018-03-23 18:42 34K 
[TXT]README-shrmip2.txt2018-04-02 16:17 387  
[ ]b2s.log2017-12-24 09:12 621  
[TXT]b2s.sh2018-01-03 16:03 269  
[TXT]bam2filtered_sam.sh2018-01-03 00:33 172  
[ ]bar2017-12-21 16:31 589M 
[DIR]elavl1/2017-12-22 17:42 -  
[ ]f2017-12-21 12:51 1.9M 
[ ]filter-sam1.awk2018-01-03 00:23 205  
[ ]foo2017-12-25 13:58 194K 
[ ]igv_session.xml2017-12-21 14:13 23K 
[ ]map.log2017-12-17 14:53 4.5K 
[ ]map.out2017-12-17 14:53 5.8K 
[ ]map2.log2017-12-17 14:57 4.5K 
[ ]map2.out2017-12-17 14:57 9.5K 
[ ]map3.log2017-12-17 16:43 7.0K 
[ ]map3.out2017-12-17 16:43 4.0M 
[ ]map4.log2017-12-18 17:42 6.9K 
[ ]map5.log2017-12-19 12:31 6.9K 
[ ]map6.log2017-12-19 14:24 8.3K 
[ ]map7.log2017-12-19 16:40 8.3K 
[ ]map8.log2017-12-19 18:22 8.3K 
[ ]map9.log2017-12-19 22:17 8.6K 
[ ]map10.log2017-12-20 02:46 9.0K 
[ ]map10.out2017-12-20 02:46 27G 
[ ]mapkap1-allreads-igv_session.xml2017-12-21 20:57 23K 
[DIR]mapkap1/2018-01-12 16:55 -  
[DIR]mapkap1b/2018-01-03 16:02 -  
[TXT]merge-replicates.sh2018-04-02 12:30 492  
[DIR]merged/2018-04-24 19:42 -  
[ ]re-shrimp-map1b.log2018-03-24 14:01 24K 
[TXT]re-shrimp-map1b.sh2018-03-23 18:44 1.7K 
[ ]re-shrimp-map1c.log2018-03-26 15:55 54K 
[TXT]re-shrimp-map1c.sh.2018-03-24 15:25 3.4K 
[ ]re-shrimp-map1d.log2018-03-26 03:59 9.4K 
[TXT]re-shrimp-map1d.sh2018-03-25 17:10 392  
[ ]re-shrimp-map1e.log2018-03-26 19:38 7.6K 
[TXT]re-shrimp-map1e.sh2018-03-26 16:37 395  
[ ]re-shrimp-map1f.log2018-03-30 15:19 0  
[ ]re-shrimp-map1f.log22018-03-27 15:05 7.6K 
[ ]re-shrimp-map1f.log32018-03-27 16:37 0  
[TXT]re-shrimp-map1f.sh2018-03-30 15:19 681  
[ ]re-shrimp-map1g.log2018-03-27 15:51 7.7K 
[ ]re-shrimp-map1g.log22018-03-27 20:08 7.7K 
[TXT]re-shrimp-map1g.sh2018-03-27 16:41 682  
[TXT]s2b.sh2018-01-03 19:15 195  
[ ]sam2tc1.awk2018-01-03 15:50 1.0K 
[DIR]sampled/2018-04-02 17:49 -  
[TXT]shrimp-map-gene-sam.sh2017-12-21 13:09 3.5K 
[TXT]shrimp-map1.sh2017-12-21 21:06 3.9K 
[ ]shrimp-map1.sh22017-12-20 14:54 1.4K 
[TXT]shrimp-map1b.sh2017-12-21 21:06 1.7K 
[TXT]shrimp-map2.sh2017-12-21 13:06 3.4K 
[TXT]shrimp-map2b.sh2017-12-21 21:06 2.3K 
[ ]shrimp2TtoC1.awk2017-12-21 18:13 1.7K 
[ ]shrimp2TtoC2.awk2017-12-19 23:02 1.9K 
[ ]test-15mMm.log2017-12-20 14:51 6.2K 
[ ]test-15mMm.out2017-12-20 14:51 86M 
[ ]test-18m.log2017-12-20 14:53 6.7K 
[ ]test-18m.out2017-12-20 14:53 78M 
[ ]test-aligned-reads.awk2018-03-26 18:42 138  
[ ]test.csfasta2017-12-20 14:30 1.6M 
[DIR]tmp/2018-01-03 00:49 -  
[DIR]x/2018-01-02 20:03 -  
Apache/2.4.66 (Debian) Server at genomics-lab.fleming.gr Port 443