7 matches for "Mapkap1" in buffer: Mus_musculus.NCBIM37.64-toMM9.fa
 921750:>ENSMUST00000124443 gene=Mapkap1 CDS=711-1630
 921775:>ENSMUST00000113124 gene=Mapkap1 CDS=282-1740
 921802:>ENSMUST00000113129 gene=Mapkap1 CDS=447-1905
 921836:>ENSMUST00000113123 gene=Mapkap1 CDS=522-1512
 921859:>ENSMUST00000040459 gene=Mapkap1 CDS=373-1926
 921888:>ENSMUST00000147337 gene=Mapkap1 CDS=142-1708
 921934:>ENSMUST00000113126 gene=Mapkap1 CDS=48-1614

grep -A4   $i > $i".shr"
for i in *out
do
echo $i
grep -A4 ENSMUST00000124443  $i > $i".ENSMUST00000124443.shr"
grep -A4 ENSMUST00000113124  $i > $i".ENSMUST00000113124.shr"
grep -A4 ENSMUST00000113129  $i > $i".ENSMUST00000113129.shr"
grep -A4 ENSMUST00000113123  $i > $i".ENSMUST00000113123.shr"
grep -A4 ENSMUST00000040459  $i > $i".ENSMUST00000040459.shr"
grep -A4 ENSMUST00000147337  $i > $i".ENSMUST00000147337.shr"
grep -A4 ENSMUST00000113126  $i > $i".ENSMUST00000113126.shr"
done
cd /data/results/reference/mmu/mm9/shrimp

python /data/results/tools/align/SHRiMP_2_2_3/SHRiMP_2_2_3/utils/project-db.py --seed 010111111111111,101011111111111,110101111111111,111010111111111,111101011111111,111110101111111,111111010111111,111111101011111,111111110101111,111111111010111,111111111101011,111111111110101,111111111111010,111111111111101,111111111111111  --h-flag --shrimp-mode cs mapkap1.fa

python /data/results/tools/align/SHRiMP_2_2_3/SHRiMP_2_2_3/utils/project-db.py --seed 010111111111111,101011111111111,110101111111111,111010111111111,111101011111111,111110101111111,111111010111111,111111101011111,111111110101111,111111111010111,111111111101011,111111111110101,111111111111010,111111111111101,111111111111111  --h-flag --shrimp-mode cs elavl1.fa