samtools merge /data/images/proton/DKlab/mr/parclip/shrimp/sampled/0hrep1-merged.bam 0hrep1-15mMm2.bam.md.bam 0hrep2-15mMm.bam.md.bam.srt.bam 0hrep3-15mMm.bam.md.bam.srt.bam
samtools merge /data/images/proton/DKlab/mr/parclip/shrimp/sampled/2hrep3-merged.bam 2hrep3-15mMm2.bam.md.bam 2hrep2-15mMm2.bam.md.bam 2hrep1-15mMm2.bam.md.bam
samtools merge /data/images/proton/DKlab/mr/parclip/shrimp/sampled/6hrep1-merged.bam 6hrep1-15mMm.bam.md.bam 6hrep2-15mMm.bam.md.bam 6hrep3-15mMm.bam.md.bam