for i in ?h*Mm.bam
#for i in I*Mm.bam	 
do
    echo $i
    /data/results/tools/samtools/samtools-1.3/samtools calmd -b $i /data/results/reference/mmu/mm9/shrimp/shrimp-15mMm/mm9-stranded-mRNA.fa > foo.bam;samtools view -h foo.bam > $i.sam
    mv foo.bam $i.md.bam
done