Index of /fleming/DKlab/mr/parclip/paralyzer

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]mm9.Repeat.bedclass.tar2017-09-20 10:59 16M 
[ ]PARalyzer_v1_1_source.tgz2017-09-20 10:59 21K 
[ ]PARpipe-master20092017.zip2017-09-20 11:00 932K 
[DIR]PARpipe-master/2017-09-20 11:27 -  
[ ]PARalyzer_v1_5.tar.gz2017-09-20 11:34 42K 
[TXT]README.txt2017-09-20 11:35 12K 
[ ]RBP_analysis_pipeline_v1.0.zip2017-09-20 11:36 24M 
[ ]cERMITv1.1_Pum+QKI+IGFBP1.zip2017-09-20 11:36 14M 
[ ]Corcoran_Ohler-PARalyzer_definition of RNA binding sites from PAR-CLIP short-read sequence data-gb-2011.pdf2017-09-20 11:40 540K 
[ ]Corcoran_Ohler-PARalyzer_definition of RNA binding sites from PAR-CLIP short-read sequence data-gb-2011-s1.pdf2017-09-21 12:33 149K 
[ ]Corcoran_Ohler-PARalyzer_definition of RNA binding sites from PAR-CLIP short-read sequence data-gb-2011-s9.pdf2017-09-21 12:35 12K 
[DIR]other-usersr/2017-09-21 17:54 -  
[ ]PARalyzer_v1_1_executable.tgz2017-10-20 17:15 36K 
[ ]test.bt2018-01-03 13:54 754  
[ ]foo.bam2018-01-03 14:39 74M 
[ ]test.sam2018-01-03 17:20 406  
[ ]sam2bowtie.awk2018-01-03 17:26 1.7K 
[DIR]PARalyzer_v1_1/2018-01-03 18:29 -  
[TXT]awesome.sh2018-01-03 18:43 2.4K 
[DIR]PARalyzer_v1_1_src/2018-01-03 19:04 -  
[DIR]cermit/2018-01-05 18:16 -  
[ ]filter-pa-bed.awk2018-01-08 17:38 50  
[ ]pa2stats1.awk2018-01-09 13:55 1.2K 
[ ]pa2annotate1.awk2018-01-09 13:56 686  
[TXT]region-stats.txt2018-01-09 14:03 3.6K 
[ ]strandStats1.awk2018-01-09 20:12 168  
[ ]filterPlusStrand.awk2018-01-09 20:16 65  
[TXT]README-paralyzer1.txt2018-01-09 20:20 31K 
[ ]intersect_modeLocation1.awk2018-01-09 20:58 393  
[TXT]README-paralyzer-plots.txt2018-01-14 13:32 6.5K 
[TXT]README-paralyzer2.txt2018-01-24 15:02 7.0K 
[ ]filter-gt-2of3samples.awk2018-01-24 16:45 122  
[ ]pa2bed.awk2018-01-30 12:41 331  
[TXT]README-paralyzer3.txt2018-01-30 13:41 16K 
[ ]get-TtoC-conversionPct1.awk2018-02-01 16:47 211  
[TXT]README.PARalyzer_v1_1_src.txt2018-02-02 17:13 15K 
[ ]get-TtoC-conversionPct2.awk2018-02-02 17:14 312  
[ ]pa-dist2bed.awk2018-02-02 18:32 354  
[TXT]README-paralyzer4.txt2018-02-05 16:33 25K 
[ ]add_conversion_pct1.awk2018-02-06 15:54 513  
[TXT]README-paralyzer5.txt2018-02-07 15:40 16K 
[ ]add-conversionPct-to-intersection1.awk2018-02-11 13:46 568  
[ ]get-TtoC-conversionPct-noCutoff.awk2018-02-11 13:49 306  
[DIR]ini-files-with-introns/2018-02-12 20:25 -  
[ ]get-merged-multiintersect-details1.awk2018-02-23 16:48 496  
[ ]get-max-intersect-score1.awk2018-02-23 17:15 243  
[DIR]RBP_pipeline/2018-03-06 12:45 -  
[TXT]README-paralyzer6.txt2018-03-07 16:45 21K 
[ ]pa2annotate-for-cermit1.awk2018-03-07 17:20 920  
[ ]get-TtoC-conversionFreq1.awk2018-03-08 16:43 443  
[ ]pa2annotate-with-ncRNA1.awk2018-03-12 13:38 686  
[TXT]README-paralyzer7.txt2018-03-12 14:03 21K 
[ ]get-max-intersect-score2.awk2018-03-13 20:44 242  
[ ]pa2annotate1_no_replicates.awk2018-03-13 20:51 726  
[TXT]README-paralyzer8.txt2018-03-13 20:57 22K 
[ ]pa2bed-gt5tc2.awk2018-03-15 14:18 342  
[ ]bed2paralyzer1.awk2018-03-15 16:44 738  
[IMG]pvalue_AD_uniform_test_6h.png2018-03-20 17:06 30K 
[IMG]modscore-hist-6h.png2018-03-20 17:10 4.9K 
[IMG]pvalue_AD_uniform_test_IFN-o0.0005-st0.02.png2018-03-20 17:14 32K 
[IMG]modscore-hist-0h.png2018-03-20 17:20 4.9K 
[IMG]pvalue_AD_uniform_test_0h.png2018-03-20 17:20 30K 
[IMG]modscore-hist-2h.png2018-03-20 17:22 4.8K 
[IMG]pvalue_AD_uniform_test_2h.png2018-03-20 17:22 30K 
[IMG]pvalue_AD_uniform_test_IL4-o0.0005-st0.02.png2018-03-20 19:29 36K 
[IMG]pvalue_AD_uniform_test_IL4-o0.001-st0.02.png2018-03-20 19:32 29K 
[IMG]pvalue_AD_uniform_test_IL4-o0.001-st0.03.png2018-03-20 19:34 25K 
[TXT]pvalue_AD_uniform_test_2hrep1.txt2018-03-20 20:11 12K 
[IMG]modscore-hist-2hrep1.png2018-03-20 20:11 5.1K 
[IMG]pvalue_AD_uniform_test_2hrep1.png2018-03-20 20:11 26K 
[TXT]pvalue_AD_uniform_test_2hrep2.txt2018-03-20 20:12 12K 
[IMG]modscore-hist-2hrep2.png2018-03-20 20:12 5.1K 
[IMG]pvalue_AD_uniform_test_2hrep2.png2018-03-20 20:12 29K 
[TXT]pvalue_AD_uniform_test_2hrep3.txt2018-03-20 20:12 12K 
[IMG]modscore-hist-2hrep3.png2018-03-20 20:12 5.2K 
[IMG]pvalue_AD_uniform_test_2hrep3.png2018-03-20 20:12 27K 
[TXT]pvalue_AD_uniform_test_6hrep1.txt2018-03-20 20:12 12K 
[IMG]modscore-hist-6hrep1.png2018-03-20 20:12 5.1K 
[IMG]pvalue_AD_uniform_test_6hrep1.png2018-03-20 20:12 29K 
[TXT]pvalue_AD_uniform_test_6hrep2.txt2018-03-20 20:12 12K 
[IMG]modscore-hist-6hrep2.png2018-03-20 20:12 5.0K 
[IMG]pvalue_AD_uniform_test_6hrep2.png2018-03-20 20:12 28K 
[TXT]pvalue_AD_uniform_test_6hrep3.txt2018-03-20 20:12 12K 
[IMG]modscore-hist-6hrep3.png2018-03-20 20:12 5.1K 
[IMG]pvalue_AD_uniform_test_6hrep3.png2018-03-20 20:12 28K 
[ ]get_modescore_hist.r2018-03-20 20:14 12K 
[TXT]pvalue_AD_uniform_test_0hrep1.txt2018-03-20 20:14 12K 
[IMG]modscore-hist-0hrep1.png2018-03-20 20:14 5.1K 
[IMG]pvalue_AD_uniform_test_0hrep1.png2018-03-20 20:14 29K 
[TXT]pvalue_AD_uniform_test_0hrep2.txt2018-03-20 20:14 12K 
[IMG]modscore-hist-0hrep2.png2018-03-20 20:14 5.1K 
[IMG]pvalue_AD_uniform_test_0hrep2.png2018-03-20 20:14 26K 
[TXT]pvalue_AD_uniform_test_0hrep3.txt2018-03-20 20:15 12K 
[IMG]modscore-hist-0hrep3.png2018-03-20 20:15 5.0K 
[IMG]pvalue_AD_uniform_test_0hrep3.png2018-03-20 20:15 31K 
[ ]get_modescore_hist1.r2018-03-20 20:19 4.6K 
[ ]get_modescore_hist2.r2018-03-20 20:54 4.4K 
[ ]filter_modescore1.awk2018-03-20 20:57 77  
[ ]get-multiintersect-details1.awk2018-03-21 13:31 1.1K 
[ ]get-multiintersect-details-union1.awk2018-03-21 13:31 1.1K 
[TXT]README-paralyzer-ncRNA1.txt2018-03-21 13:34 24K 
[TXT]pvalue_AD_uniform_test_0h_all_reps.txt2018-03-22 12:36 12K 
[IMG]modscore-hist-0h_all_reps.png2018-03-22 12:36 5.1K 
[IMG]pvalue_AD_uniform_test_0h_all_reps.png2018-03-22 12:36 27K 
[TXT]pvalue_AD_uniform_test_2h_all_reps.txt2018-03-22 12:37 12K 
[IMG]modscore-hist-2h_all_reps.png2018-03-22 12:37 5.2K 
[IMG]pvalue_AD_uniform_test_2h_all_reps.png2018-03-22 12:37 28K 
[TXT]pvalue_AD_uniform_test_6h_all_reps.txt2018-03-22 12:38 12K 
[IMG]modscore-hist-6h_all_reps.png2018-03-22 12:38 5.5K 
[IMG]pvalue_AD_uniform_test_6h_all_reps.png2018-03-22 12:38 26K 
[TXT]README-modscore-analysis1.txt2018-03-22 12:40 1.0K 
[DIR]ini-files-ncRNA/2018-03-22 14:37 -  
[ ]pa2annotate1_no_replicates_ncRNA.awk2018-03-23 12:49 731  
[ ]pa2annotate1_ncRNA.awk2018-03-23 12:54 739  
[ ]get_modescore_hist3.r2018-03-23 15:09 4.5K 
[ ]get_modescore_hist4.r2018-03-23 15:12 4.7K 
[TXT]pvalue_AD_uniform_test_IFN.txt2018-03-23 15:14 12K 
[IMG]modscore-hist-IFN.png2018-03-23 15:14 4.9K 
[IMG]pvalue_AD_uniform_test_IFN.png2018-03-23 15:14 26K 
[TXT]pvalue_AD_uniform_test_IL4.txt2018-03-23 15:14 12K 
[IMG]modscore-hist-IL4.png2018-03-23 15:14 4.8K 
[IMG]pvalue_AD_uniform_test_IL4.png2018-03-23 15:14 29K 
[TXT]pvalue_AD_uniform_test_0h_rep1.txt2018-03-23 15:14 12K 
[IMG]modscore-hist-0h_rep1.png2018-03-23 15:14 5.1K 
[IMG]pvalue_AD_uniform_test_0h_rep1.png2018-03-23 15:14 29K 
[TXT]pvalue_AD_uniform_test_0h_rep2.txt2018-03-23 15:14 12K 
[IMG]modscore-hist-0h_rep2.png2018-03-23 15:14 5.1K 
[IMG]pvalue_AD_uniform_test_0h_rep2.png2018-03-23 15:14 26K 
[TXT]pvalue_AD_uniform_test_0h_rep3.txt2018-03-23 15:14 12K 
[IMG]modscore-hist-0h_rep3.png2018-03-23 15:14 5.1K 
[IMG]pvalue_AD_uniform_test_0h_rep3.png2018-03-23 15:14 31K 
[TXT]pvalue_AD_uniform_test_2h_rep1.txt2018-03-23 15:15 12K 
[IMG]modscore-hist-2h_rep1.png2018-03-23 15:15 5.1K 
[IMG]pvalue_AD_uniform_test_2h_rep1.png2018-03-23 15:15 26K 
[TXT]pvalue_AD_uniform_test_2h_rep2.txt2018-03-23 15:15 12K 
[IMG]modscore-hist-2h_rep2.png2018-03-23 15:15 5.2K 
[IMG]pvalue_AD_uniform_test_2h_rep2.png2018-03-23 15:15 29K 
[TXT]pvalue_AD_uniform_test_2h_rep3.txt2018-03-23 15:15 12K 
[IMG]modscore-hist-2h_rep3.png2018-03-23 15:15 5.2K 
[IMG]pvalue_AD_uniform_test_2h_rep3.png2018-03-23 15:15 27K 
[TXT]pvalue_AD_uniform_test_6h_rep1.txt2018-03-23 15:15 12K 
[IMG]modscore-hist-6h_rep1.png2018-03-23 15:15 5.1K 
[IMG]pvalue_AD_uniform_test_6h_rep1.png2018-03-23 15:15 29K 
[TXT]pvalue_AD_uniform_test_6h_rep2.txt2018-03-23 15:15 12K 
[IMG]modscore-hist-6h_rep2.png2018-03-23 15:15 5.0K 
[IMG]pvalue_AD_uniform_test_6h_rep2.png2018-03-23 15:15 28K 
[TXT]pvalue_AD_uniform_test_6h_rep3.txt2018-03-23 15:15 12K 
[IMG]modscore-hist-6h_rep3.png2018-03-23 15:15 5.1K 
[IMG]pvalue_AD_uniform_test_6h_rep3.png2018-03-23 15:15 28K 
[DIR]ini-files2/2018-03-26 19:10 -  
[TXT]README-paralyzer10.txt2018-03-26 20:08 24K 
[TXT]README-paralyzer11.txt2018-03-30 19:03 25K 
[DIR]ini-files-mRNA-sampled/2018-04-02 17:51 -  
[ ]uqn1.r2018-04-12 15:43 10K 
[TXT]README-paralyzer12.txt2018-04-23 15:48 19K 
[TXT]README-paralyzer9-union.txt2018-04-23 16:23 34K 
[DIR]PARalyzer_v1_1b/2018-04-23 17:57 -  
[ ]sh.IFN.ini2018-04-24 15:39 6.1K 
[DIR]ini-files-union-of-reads/2018-04-24 19:50 -  
[TXT]README-paralyzer13.txt2018-04-25 14:22 16K 
[TXT]README-compile-paralyzer.txt2018-04-27 18:54 1.6K 
[TXT]judy.c2018-04-28 20:07 550  
[ ]foo-12018-04-29 13:15 1.3K 
[ ]foo-22018-04-29 13:15 2.6K 
[ ]foo-32018-04-29 13:15 3.9K 
[ ]foo-42018-04-29 13:15 5.2K 
[ ]foo-52018-04-29 13:15 6.5K 
[ ]foo-62018-04-29 13:15 7.8K 
[ ]foo-72018-04-29 13:15 9.1K 
[ ]foo-82018-04-29 13:15 10K 
[ ]foo-92018-04-29 13:15 12K 
[TXT]sam-split-references1.c2018-05-02 12:52 2.5K 
[ ]sam-split-references2018-05-02 12:52 11K 
[ ]filter_csv_modescore1.awk2018-05-03 19:57 51  
[ ]filter_csv_modescore2.awk2018-05-05 12:34 136  
[TXT]README-sample-correlation.txt2018-05-09 16:06 123  
[DIR]PARalyzer_v1_1c/2018-05-10 17:58 -  
[ ]filter_modescore1_keep_best.awk2018-05-10 18:13 285  
[ ]a.out2018-05-11 15:15 11K 
[TXT]omit-reads.c2018-05-11 15:27 2.1K 
[ ]omit-reads2018-05-11 15:28 11K 
[TXT]README-paralyzer9.txt2018-05-15 12:12 31K 
[ ]get-TtoC-conversionPct-noCutoff2.awk2018-05-15 12:34 826  
[ ]pa2bed-gt5tc.awk2018-05-15 12:40 865  
[ ]pa-dist2bed2.awk2018-05-15 12:51 668  
[ ]add_conversion_pct2.awk2018-05-15 13:02 2.5K 
[ ]pa2annotate-ExonIntron1.awk2018-05-17 15:28 1.0K 
[ ]pa2bed-gt5reads-gt5tc.awk2018-05-17 15:37 875  
[ ]pa2bed-ge5reads-ge5tc.awk2018-05-17 15:37 877  
[DIR]ini-files-mRNA/2018-05-17 15:40 -  
[TXT]README-paralyzer15-1kIntrons-UNFINSHED.txt2018-05-17 16:01 18K 
[TXT]README-saturation-analysis.txt2018-05-23 20:43 9.4K 
[ ]get-multiintersect-details-2of2.awk2018-05-31 15:59 910  
[ ]get-multiintersect-details-1of2.awk2018-05-31 15:59 910  
[ ]keep_matching_clusters.awk2018-06-07 15:21 109  
[ ]get-best-collapsed-cluster1.awk2018-06-08 19:39 243  
[ ]get-max-intersect-score3.awk2018-06-11 15:01 242  
[ ]pa2annotate-ExonIntron2.awk2018-06-11 15:17 1.1K 
[ ]exon-intron.log2018-06-11 16:31 45K 
[ ]get-best-collapsed-cluster2.awk2018-06-11 19:02 309  
[ ]per-gene-exon-intron-stats1a.awk2018-06-11 19:37 402  
[ ]per-gene-exon-intron-stats1.awk2018-06-11 19:52 1.6K 
[TXT]README-paralyzer14-1kIntrons.txt2018-06-12 14:29 56K 
[ ]filter_GE5reads_convEvPctGT5.awk2018-06-13 18:19 146  
[ ]exon-intron.log22018-06-13 18:50 29K 
[ ]de-dup-clusters1.awk2018-06-13 20:24 1.2K 
[ ]exon-intron.log32018-06-13 20:27 93K 
[ ]RBP_pipeline2.taz2018-07-10 16:55 42M 
[TXT]README-cermit.txt2018-07-11 13:53 1.8K 
[DIR]RBP_pipeline2/2018-07-12 17:30 -  
[ ]per-gene-exon-intron-stats1.awk-commented2018-08-21 20:33 1.7K 
[TXT]README-paralyzer16.txt2018-08-21 20:47 65K 
[ ]foo2018-08-22 13:06 62M 
[ ]get-nTtoC-and-nReads1.awk2018-08-22 13:09 642  
[ ]get-nTtoC-and-nReads2.awk2018-08-22 17:26 944  
[TXT]mails.txt2018-08-22 19:56 23K 
[TXT]README-get-TtoC.txt2018-09-07 13:55 6.0K 
[TXT]README-paralyzer15.txt2018-09-24 17:04 66K 
[DIR]ini-files-1kIntron/2018-09-26 16:47 -  
[TXT]sam2bowtie.txt2018-09-27 18:26 9.2K 
[ ]sam2bowtie.awk22018-09-27 18:34 1.7K 
[ ]pa2bed-gt5tc-plus.awk2018-09-28 19:45 878  
[ ]get-best-collapsed-cluster3.awk2018-09-28 20:41 243  
[DIR]ini-files-1kIntron2/2018-09-28 20:47 -  
[ ]filter_GE5reads.awk2018-09-30 19:06 137  
[ ]per-gene-stats1.awk2018-10-05 12:39 1.8K 
[ ]get-best-modscore-collapsed-cluster1.awk2018-10-05 17:14 271  
[ ]per-gene-stats2.awk2018-10-08 12:47 2.1K 
[ ]per-gene-stats3.awk2018-10-08 16:56 2.9K 
[ ]per-gene-stats4.awk2018-10-08 17:19 3.1K 
[DIR]PARalyzer_v1_1d/2018-10-09 14:30 -  
[ ]per-gene-stats5.awk2018-10-09 15:00 3.1K 
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