BEGIN{ FS=","; #paralyzer format #Chromosome,Strand,ClusterStart,ClusterEnd,ClusterID,InfoType,AvgConversionPct,MaxConversionPct,ConversionEventCount,SdevConversionPct #1 ,2 ,3 ,4 ,5 ,6 ,7 ,8 ,9 ,10 #out: bed format # 1 2 3 4 _ (7) _ (9) _ (10) _ 5 _ 6 #Chromosome,ClusterStart,ClusterEnd,ClusterID,AvgConversionPct,ConversionEventCount,SdevConversionPct, MaxConversionPct ,Strand }{ # if (substr($1,1,4)!="Chro") { print $1"\t"$3-1"\t"$4-1"\t"$5"_"$7"_"$9"_"$10"\t"$8"\t"$2; # } }