Index of /fleming/DKlab/mr/rnaseq/tracks/stringtie
Name
Last modified
Size
Description
Parent Directory
-
DKphenodata-ko0VSwt0.csv
2017-06-12 19:22
50
DKphenodata-ko2VSwt2.csv
2017-06-12 19:35
50
DKphenodata-ko6VSwt6.csv
2017-06-12 19:34
50
DKphenodata-koIFN-VS-wtIFN.csv
2017-06-12 19:44
66
DKphenodata-koIL4-VS-wtIL4.csv
2017-06-12 20:20
64
DKphenodata-wtVSko.csv
2017-06-14 16:21
271
DKphenodata.csv
2017-06-12 18:22
335
EdgeR-isoform expression-correlation-0h.png
2017-06-20 18:27
11K
EdgeR-isoform expression-correlation-2h.png
2017-06-20 18:30
11K
EdgeR-isoform expression-correlation-6h.png
2017-06-20 18:30
11K
EdgeR-isoform expression-correlation-IFN.png
2017-06-20 18:30
12K
EdgeR-isoform expression-correlation-IL4.png
2017-06-20 18:30
12K
EdgeR Isoform expressionV2 in Mapkap1.png
2017-07-24 13:26
185K
EdgeR Isoform expressionV2 in Nf1.png
2017-07-25 14:48
261K
EdgeR Isoform expressionV3 in Mapkap1.png
2017-07-20 19:33
210K
EdgeR Isoform expression in Abr.png
2017-07-20 20:16
267K
EdgeR Isoform expression in Bcl2l14-IFN2.png
2017-11-21 13:17
60K
EdgeR Isoform expression in Bcl2l14.png
2017-11-21 13:16
119K
EdgeR Isoform expression in Ddx41.png
2017-07-14 18:02
92K
EdgeR Isoform expression in Fam49b.png
2017-06-15 20:28
108K
EdgeR Isoform expression in Fcgr2b.png
2017-06-15 18:21
140K
EdgeR Isoform expression in Gm12250.png
2017-11-21 13:13
166K
EdgeR Isoform expression in Mapkap1.png
2017-07-20 19:12
142K
EdgeR Isoform expression in Mapkap1_white.png
2017-08-31 12:58
151K
EdgeR Isoform expression in Mapkap1_white2.png
2017-08-31 13:05
134K
EdgeR Isoform expression in Mapkap1_yellow.png
2017-08-30 18:15
120K
EdgeR Isoform expression in Mapkap1_yellow2.png
2017-08-30 19:47
107K
EdgeR Isoform expression in Mcart6.png
2017-06-15 18:26
133K
EdgeR Isoform expression in Mitf.png
2017-07-20 20:16
266K
EdgeR Isoform expression in Ncoa6.png
2017-06-15 18:01
134K
EdgeR Isoform expression in Nf1.png
2017-07-25 14:44
349K
EdgeR Isoform expression in Ppp6r1.png
2017-06-15 18:26
203K
EdgeR Isoform expression in Stk11ip.png
2017-07-14 18:04
194K
EdgeR Isoform expression in Tmem176a.png
2017-06-15 18:27
206K
EdgeR all-wtVSko-Isoform expression in Angel2.png
2017-06-28 21:02
208K
EdgeR all-wtVSko-Isoform expression in Mettl2.png
2017-06-29 15:30
139K
EdgeR all-wtVSko-Isoform expression in Mitf.png
2017-06-29 15:32
175K
EdgeR top1-0h-Isoform expression-0h in Ifi203.png
2017-06-18 19:52
159K
EdgeR top1-0h-Isoform expression-0h in Zfp143.png
2017-06-18 19:56
77K
EdgeR top1-0h-Isoform expression in Ifi203.png
2017-06-18 19:49
246K
EdgeR top1-0h-Isoform expression in Zfp143.png
2017-06-19 01:03
138K
EdgeR top1-2h-Isoform expression-2h in Kif5c.png
2017-06-19 00:58
62K
EdgeR top1-2h-Isoform expression in Kif5c.png
2017-06-19 01:05
91K
EdgeR top1-6h-Isoform expression in Katna1.png
2017-06-19 01:16
111K
EdgeR top1-IFN-Isoform expression in Gm12250.png
2017-06-19 01:21
126K
EdgeR top1-IL4-Isoform expression in Dyrk2.png
2017-06-19 01:25
84K
HuR-Exon2-alt-splice-in-KO-ELAVL3-hgt_genomics_lab_20207_fc14b0.pdf
2017-06-13 13:42
168K
Isoform expression in Atpaf2.png
2017-06-14 17:16
130K
Isoform expression in Cast.png
2017-06-14 17:15
168K
Isoform expression in Csde1.png
2017-06-14 17:15
110K
Isoform expression in Dctn2.png
2017-06-14 17:16
100K
Isoform expression in Ddx58.png
2017-06-14 17:15
159K
Isoform expression in Dlst-wt0h-vs-ko0h.png
2017-06-13 18:24
39K
Isoform expression in Dlst.png
2017-06-13 18:48
124K
Isoform expression in Elavl1-wt0h-vs-ko0h.png
2017-06-13 18:16
35K
Isoform expression in Elavl1.png
2017-06-13 18:46
101K
Isoform expression in Fnbp4.png
2017-06-14 17:15
187K
Isoform expression in Lgals8.png
2017-06-14 17:15
172K
Isoform expression in Mbnl1.png
2017-06-14 17:16
193K
Isoform expression in Pgap2.png
2017-06-14 17:15
258K
Isoform expression in Rnf6.png
2017-06-14 20:38
126K
Isoform expression in Slc39a1.png
2017-06-14 17:15
83K
Isoform expression in Srek1.png
2017-06-14 17:15
153K
KO21.gtf
2017-06-11 21:42
75M
KO21.gtf2
2017-08-30 14:59
75M
KO21.gtf3
2017-08-30 21:15
75M
KO21.log
2017-08-30 23:10
0
KO21.tab
2017-08-30 21:15
4.0M
KO22.gtf
2017-06-11 21:49
75M
KO22.gtf2
2017-08-30 15:05
75M
KO22.gtf3
2017-08-30 21:21
75M
KO22.log
2017-08-30 23:16
0
KO22.tab
2017-08-30 21:21
4.0M
KOIFN1.gtf
2017-06-11 22:10
70M
KOIFN1.gtf2
2017-08-30 14:56
70M
KOIFN1.gtf3
2017-08-30 21:42
70M
KOIFN1.log
2017-08-30 23:36
0
KOIFN1.tab
2017-08-30 21:42
3.9M
KOIFN2.gtf
2017-06-11 22:16
69M
KOIFN2.gtf2
2017-08-30 15:02
69M
KOIFN2.gtf3
2017-08-30 21:48
69M
KOIFN2.log
2017-08-30 23:43
0
KOIFN2.tab
2017-08-30 21:48
3.8M
KO_IL4_replicate_Ib/
2017-11-10 19:40
-
Ko01.gtf
2017-06-11 21:28
77M
Ko01.gtf2
2017-08-30 14:45
77M
Ko01.gtf3
2017-08-30 21:01
77M
Ko01.log
2017-08-30 22:58
0
Ko01.tab
2017-08-30 21:01
4.1M
Ko02.gtf
2017-06-11 21:35
77M
Ko02.gtf2
2017-08-30 14:52
77M
Ko02.gtf3
2017-08-30 21:08
77M
Ko02.log
2017-08-30 23:03
0
Ko02.tab
2017-08-30 21:08
4.0M
Ko1IL4.gtf
2017-06-11 22:24
77M
Ko1IL4.gtf2
2017-08-30 15:09
77M
Ko1IL4.gtf3
2017-08-30 21:56
77M
Ko1IL4.log
2017-08-30 23:48
0
Ko1IL4.tab
2017-08-30 21:56
4.1M
Ko2IL4.gtf
2017-06-11 22:31
77M
Ko2IL4.gtf2
2017-08-30 15:16
77M
Ko2IL4.gtf3
2017-08-30 22:03
77M
Ko2IL4.log
2017-08-30 23:55
0
Ko2IL4.tab
2017-08-30 22:03
4.1M
Ko61.gtf
2017-06-11 21:55
72M
Ko61.gtf2
2017-08-30 14:41
72M
Ko61.gtf3
2017-08-30 21:28
72M
Ko61.log
2017-08-30 23:23
0
Ko61.tab
2017-08-30 21:28
4.0M
Ko62.gtf
2017-06-11 22:03
74M
Ko62.gtf2
2017-08-30 14:49
74M
Ko62.gtf3
2017-08-30 21:35
74M
Ko62.log
2017-08-30 23:29
0
Ko62.tab
2017-08-30 21:35
4.0M
Mus_musculus.NCBIM37.64-toMM9-white.gtf
2017-08-30 19:57
273M
Mus_musculus.NCBIM37.64-toMM9-yellow.gtf
2017-08-30 14:25
273M
Mus_musculus.NCBIM37.64-toMM9.gtf
2017-08-29 17:44
273M
Nf1_TransciptLen_vs_expression_FPKM.KO21.png
2017-08-02 12:12
25K
Nf1_TransciptLen_vs_expression_FPKM.KOIFN1.png
2017-08-02 12:12
24K
Nf1_TransciptLen_vs_expression_FPKM.Ko01.png
2017-08-02 12:12
27K
Nf1_TransciptLen_vs_expression_FPKM.Ko1IL4.png
2017-08-02 12:12
23K
Nf1_TransciptLen_vs_expression_FPKM.Ko61.png
2017-08-02 12:12
26K
PCG_KO21.gtf
2017-07-05 17:54
91M
PCG_KO22.gtf
2017-07-05 18:00
91M
PCG_KOIFN1.gtf
2017-07-05 18:19
90M
PCG_KOIFN2.gtf
2017-07-05 18:24
90M
PCG_Ko01.gtf
2017-07-05 17:23
90M
PCG_Ko02.gtf
2017-07-05 17:29
91M
PCG_Ko1IL4.gtf
2017-07-05 18:31
90M
PCG_Ko2IL4.gtf
2017-07-05 18:38
90M
PCG_Ko61.gtf
2017-07-05 18:06
90M
PCG_Ko62.gtf
2017-07-05 18:12
90M
PCG_wt01.gtf
2017-07-05 17:30
91M
PCG_wt01IL4.gtf
2017-07-05 18:09
90M
PCG_wt02.gtf
2017-07-05 17:34
90M
PCG_wt02IL4.gtf
2017-07-05 18:14
90M
PCG_wt21.gtf
2017-07-05 17:38
90M
PCG_wt22.gtf
2017-07-05 17:43
90M
PCG_wt61.gtf
2017-07-05 17:48
90M
PCG_wt62.gtf
2017-07-05 17:52
90M
PCG_wtIFN1.gtf
2017-07-05 17:57
90M
PCG_wtIFN2.gtf
2017-07-05 18:04
90M
README-ASwell1.txt
2018-07-13 16:31
1.3K
README-NF1-alt-splice.txt
2017-08-02 12:17
5.9K
README-mapkap1-alt-splice.txt
2017-08-31 12:57
19K
README-processing-per-gene-batch-correction.txt
2018-06-25 16:20
7.6K
README-processing-per-gene.txt
2018-05-31 14:04
7.3K
README-processing.txt
2017-11-21 13:17
47K
TransciptLen_vs_expression_FPKM.KO21.png
2017-07-28 20:09
26K
TransciptLen_vs_expression_FPKM.KOIFN1.png
2017-07-28 20:09
24K
TransciptLen_vs_expression_FPKM.Ko01.png
2017-07-28 20:09
23K
TransciptLen_vs_expression_FPKM.Ko1IL4.png
2017-07-28 20:09
26K
TransciptLen_vs_expression_FPKM.Ko61.png
2017-07-28 20:09
24K
addGeneToEdger.awk
2017-08-31 13:19
1.1K
all_pairs.txt
2017-06-15 13:30
172
all_pairs_edger.txt
2017-06-15 17:09
122
all_pairs_edgerExpr.txt
2017-06-17 16:43
142
ballgown/
2017-06-12 15:28
-
ballgown2/
2017-08-30 17:43
-
ballgown3/
2017-08-31 00:03
-
bar
2017-06-18 18:13
10M
comare1.annotated.gtf
2017-06-12 12:19
121M
comare1.loci
2017-06-12 12:19
5.5M
comare1.merged.gtf.refmap
2017-06-12 12:19
4.8M
comare1.merged.gtf.tmap
2017-06-12 12:19
11M
comare1.stats
2017-06-12 12:19
1.4K
comare1.tracking
2017-06-12 12:19
12M
e2t.ctab
2017-08-30 22:03
8.1M
e_data.ctab
2017-08-30 22:03
25M
edgeR4genes.sh
2018-05-29 18:43
22K
edgeRgenes_featurecount-0h.csv
2018-05-31 13:52
1.4M
edgeRgenes_featurecount-2h.csv
2018-05-31 13:55
1.6M
edgeRgenes_featurecount-6h.csv
2018-05-31 13:55
1.3M
edgeRgenes_featurecount-IFN.csv
2018-05-31 14:02
1.2M
edgeRgenes_featurecount-IL4.csv
2018-05-31 13:55
1.3M
edgeRgenes_featurecount.csv
2018-05-29 15:32
1.5M
edgeRgenes_featurecount2-IFN.csv
2018-05-31 13:55
1.2M
edgeRgenes_featurecount2Expr-IFN.csv
2018-05-31 13:55
2.4M
edgeRgenes_featurecountExpr-0h.csv
2018-05-31 13:52
2.7M
edgeRgenes_featurecountExpr-2h.csv
2018-05-31 13:55
2.9M
edgeRgenes_featurecountExpr-6h.csv
2018-05-31 13:55
2.6M
edgeRgenes_featurecountExpr-IFN.csv
2018-05-31 14:02
2.4M
edgeRgenes_featurecountExpr-IL4.csv
2018-05-31 13:55
2.5M
edgeRgenes_featurecountExpr.csv
2018-05-29 13:05
8.9M
edgeRtranscripts-0h.csv
2017-06-17 16:41
4.8M
edgeRtranscripts-0h.withGID.csv
2017-06-18 19:40
6.1M
edgeRtranscripts-0h.withGID.csv.alt_spliced.csv
2017-06-18 19:19
111
edgeRtranscripts-0h.withGID.csv.alt_spliced_best.csv
2017-06-15 20:02
31K
edgeRtranscripts-2h.csv
2017-06-18 19:38
4.7M
edgeRtranscripts-2h.withGID.csv
2017-06-18 19:40
6.0M
edgeRtranscripts-2h.withGID.csv.alt_spliced.csv
2017-06-18 19:19
111
edgeRtranscripts-2h.withGID.csv.alt_spliced_best.csv
2017-06-15 20:02
35K
edgeRtranscripts-6h.csv
2017-06-18 19:38
4.6M
edgeRtranscripts-6h.withGID.csv
2017-06-18 19:40
5.9M
edgeRtranscripts-6h.withGID.csv.alt_spliced.csv
2017-06-18 19:19
111
edgeRtranscripts-6h.withGID.csv.alt_spliced_best.csv
2017-06-15 20:02
20K
edgeRtranscripts-IFN.csv
2017-06-18 19:39
4.4M
edgeRtranscripts-IFN.withGID.csv
2017-06-18 19:40
5.6M
edgeRtranscripts-IFN.withGID.csv.alt_spliced.csv
2017-06-18 19:19
111
edgeRtranscripts-IFN.withGID.csv.alt_spliced_best.csv
2017-06-15 20:02
23K
edgeRtranscripts-IL4.csv
2017-06-18 19:39
4.6M
edgeRtranscripts-IL4.withGID.csv
2017-06-18 19:40
5.9M
edgeRtranscripts-IL4.withGID.csv.alt_spliced.csv
2017-06-18 19:19
111
edgeRtranscripts-IL4.withGID.csv.alt_spliced_best.csv
2017-06-15 20:02
22K
edgeRtranscripts-wtVSko.csv
2017-06-28 20:09
5.4M
edgeRtranscripts-wtVSko3.csv
2017-08-31 13:14
5.4M
edgeRtranscripts.csv.v0
2017-06-12 16:37
5.2M
edgeRtranscripts3-0h.csv
2018-05-31 15:08
4.8M
edgeRtranscripts3-2h.csv
2018-05-31 15:08
4.7M
edgeRtranscripts3-6h.csv
2018-05-31 15:08
4.6M
edgeRtranscripts3-IFN.csv
2018-05-31 15:09
4.4M
edgeRtranscripts3-IL4.csv
2018-05-31 15:09
4.6M
edgeRtranscripts3Expr-0h.csv
2018-05-31 15:08
8.6M
edgeRtranscripts3Expr-2h.csv
2018-05-31 15:08
8.4M
edgeRtranscripts3Expr-6h.csv
2018-05-31 15:08
8.3M
edgeRtranscripts3Expr-IFN.csv
2018-05-31 15:09
8.0M
edgeRtranscripts3Expr-IL4.csv
2018-05-31 15:09
8.4M
edgeRtranscriptsExpr-0h.csv
2017-06-17 16:41
8.6M
edgeRtranscriptsExpr-0h.csv2
2017-06-18 19:37
8.6M
edgeRtranscriptsExpr-0h.withGID.csv
2017-06-18 19:40
10M
edgeRtranscriptsExpr-0h.withGID.csv.alt_spliced.csv
2017-06-18 19:41
11K
edgeRtranscriptsExpr-0h.withGID.csv.alt_spliced.xlsx
2017-06-18 19:57
14K
edgeRtranscriptsExpr-0h.withGID.csv.alt_spliced2.csv
2017-06-29 16:04
20K
edgeRtranscriptsExpr-0h.withGID.csv.hist
2017-06-20 18:21
14K
edgeRtranscriptsExpr-2h.csv
2017-06-18 19:38
8.4M
edgeRtranscriptsExpr-2h.withGID.csv
2017-06-18 19:40
9.7M
edgeRtranscriptsExpr-2h.withGID.csv.alt_spliced.csv
2017-06-18 19:41
13K
edgeRtranscriptsExpr-2h.withGID.csv.alt_spliced.xlsx
2017-06-19 01:13
15K
edgeRtranscriptsExpr-2h.withGID.csv.alt_spliced2.csv
2017-06-29 16:04
23K
edgeRtranscriptsExpr-2h.withGID.csv.hist
2017-06-20 18:21
22K
edgeRtranscriptsExpr-6h.csv
2017-06-18 19:38
8.3M
edgeRtranscriptsExpr-6h.withGID.csv
2017-06-18 19:40
9.6M
edgeRtranscriptsExpr-6h.withGID.csv.alt_spliced.csv
2017-06-18 19:41
8.4K
edgeRtranscriptsExpr-6h.withGID.csv.alt_spliced.xlsx
2017-06-19 01:15
12K
edgeRtranscriptsExpr-6h.withGID.csv.alt_spliced2.csv
2017-06-29 16:04
15K
edgeRtranscriptsExpr-6h.withGID.csv.hist
2017-06-20 18:21
8.7K
edgeRtranscriptsExpr-IFN.csv
2017-06-18 19:39
8.0M
edgeRtranscriptsExpr-IFN.withGID.csv
2017-06-18 19:40
9.2M
edgeRtranscriptsExpr-IFN.withGID.csv.alt_spliced.csv
2017-06-18 19:41
9.8K
edgeRtranscriptsExpr-IFN.withGID.csv.alt_spliced.xlsx
2017-06-19 01:20
13K
edgeRtranscriptsExpr-IFN.withGID.csv.alt_spliced2.csv
2017-06-29 16:04
18K
edgeRtranscriptsExpr-IFN.withGID.csv.hist
2017-06-20 18:21
9.2K
edgeRtranscriptsExpr-IL4.csv
2017-06-18 19:39
8.4M
edgeRtranscriptsExpr-IL4.withGID.csv
2017-06-18 19:40
9.7M
edgeRtranscriptsExpr-IL4.withGID.csv.alt_spliced.csv
2017-06-18 19:41
9.7K
edgeRtranscriptsExpr-IL4.withGID.csv.alt_spliced.xlsx
2017-06-19 01:24
12K
edgeRtranscriptsExpr-IL4.withGID.csv.alt_spliced2.csv
2017-06-29 16:04
18K
edgeRtranscriptsExpr-IL4.withGID.csv.hist
2017-06-20 18:21
8.0K
edgeRtranscriptsExpr-wtVSko.csv
2017-06-28 20:10
24M
edgeRtranscriptsExpr-wtVSko.withGID.csv
2017-06-28 20:10
26M
edgeRtranscriptsExpr-wtVSko.withGID.csv.alt_spliced-anticorrLT0.05.xlsx
2017-06-28 20:35
16K
edgeRtranscriptsExpr-wtVSko.withGID.csv.alt_spliced-anticorrLT0.1.xlsx
2017-06-28 21:38
20K
edgeRtranscriptsExpr-wtVSko.withGID.csv.alt_spliced.csv
2017-06-28 20:42
13K
edgeRtranscriptsExpr-wtVSko.withGID.csv.alt_spliced2.csv
2017-06-29 16:04
488
edgeRtranscriptsExpr-wtVSko.withGID.csv.alt_spliced_in_GE_one_condition.csv
2017-06-29 16:12
15K
edgeRtranscriptsExpr-wtVSko3.csv
2017-08-31 13:14
25M
edgeRtranscriptsExpr-wtVSko3.withGID.csv
2017-08-31 13:20
26M
edgeRtranscriptsExpr-wtVSko3.withGID.csv.alt_spliced.csv
2017-08-31 13:24
488
edgeRtranscriptsExpr-wtVSko3.withGID.csv.alt_spliced_in_GE_one_condition.csv
2017-08-31 14:05
15K
edgeRtranscripts_all_pairs.csv
2017-06-15 17:10
23M
edgeRtranscripts_wtVSko.csv
2017-06-15 15:38
5.4M
edgeRtranscripts_wtVSko.withGID.csv
2017-06-15 17:49
7.0M
edgeRtranscripts_wtVSko.withGID.csv.alt_spliced.csv
2017-06-18 19:19
111
edgeRtranscripts_wtVSko.withGID.csv.alt_spliced_best.csv
2017-06-15 20:02
14K
edgeRtranscripts_wtVSko.withGID_alt_spliced.csv
2017-06-15 17:59
230K
edger2/
2018-03-19 13:38
-
foo
2018-05-25 17:33
3.0M
gene_count_matrix.csv
2018-03-19 13:51
2.7M
gene_count_matrix2.csv
2018-05-25 17:40
2.7M
gene_counts_merged3.txt
2018-05-28 16:10
23M
gene_counts_merged3.txt-
2018-05-29 01:21
0
gene_counts_merged3.txt-sortedKO22pos
2018-05-29 03:10
676K
gene_counts_merged3.txt-sortedKOIFN1pos
2018-05-29 07:59
674K
gene_counts_merged3.txt-sortedKOIFN2pos
2018-05-29 07:59
0
gene_counts_merged3.txt-sortedKo02pos.sorted
2018-05-28 15:00
677K
gene_counts_merged3.txt-sortedKo1IL4pos
2018-05-29 07:59
0
gene_counts_merged3.txt-sortedKo2IL4pos
2018-05-29 08:00
0
gene_counts_merged3.txt-sortedKo61pos
2018-05-29 04:38
675K
gene_counts_merged3.txt-sortedKo62pos
2018-05-29 06:21
676K
gene_counts_merged3.txt-sortedwt01IL4pos
2018-05-29 01:21
677K
gene_counts_merged3.txt-sortedwt01pos.sorted
2018-05-28 13:45
676K
gene_counts_merged3.txt-sortedwt02pos.sorted
2018-05-28 16:12
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gene_counts_merged3.txt.summary
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gene_counts_merged3.txt1
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gene_counts_merged3_featurecounts.txt
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gene_counts_merged3b.txt
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gene_counts_merged4_featurecounts.txt
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getAltspliced.sh
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getEdgerDEresultsAndGetAltSpliced1.awk
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getEdgerDEresultsAndGetAltSplicedBest1.awk
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getEdgerDEresultsAndGetAltSplicedGroups2.awk
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getEdgerDEresultsAndGetAltSplicedNsig.awk
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getTranscript-expressions3.r
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htseq-calls.sh
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legend.csv
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mapkap1-alt-splice-expressions.csv
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mapkap1-alt-splice-expressions.xlsx
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mapkap1-alt-splice-sequences.fa
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mergeDEresults1.awk
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mergeDEresults2.awk
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mergeDEresultsAndGetAltSpliced1.awk
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mergeEdgerDEresults1.awk
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nf1-alt-splice-sequences.fa
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runStringtie1.sh
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runStringtie2.sh
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sequences/
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stringtie_transcript_results2.csv
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structures/
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t_data.ctab
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transcript_count_matrix.csv
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transcript_count_matrix2.csv
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transcripts_wt_vs_ko_alt_spliced_in_at_least_one_condition.xlsx
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wt0VSko0_gene_results.csv
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wt0VSko0_transcript_results.csv
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wt2VSko2_gene_results.csv
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