Index of /fleming/DKlab/mr/rnaseq-vs-polysomeseq

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2h_ko_rna_vs_poly.pdf2019-07-17 18:38 101K 
[ ]2h_ko_rna_vs_poly2.pdf2019-07-17 19:17 101K 
[ ]2h_rna_vs_poly.pdf2019-07-18 12:18 4.5K 
[ ]2h_wt_rna_vs_poly.pdf2019-07-17 18:38 101K 
[ ]2h_wt_rna_vs_poly2.pdf2019-07-17 19:17 101K 
[ ]6h_ko_rna_vs_poly.pdf2019-07-17 18:40 101K 
[ ]6h_ko_rna_vs_poly2.pdf2019-07-17 19:17 101K 
[ ]6h_rna_vs_poly.pdf2019-07-18 12:18 4.5K 
[ ]6h_wt_rna_vs_poly.pdf2019-07-17 18:40 100K 
[ ]6h_wt_rna_vs_poly2.pdf2019-07-17 19:17 100K 
[IMG]Down in poly_seq_metascape_result_M0_bubbleplot_Summaries_v1.png2019-07-26 19:44 202K 
[IMG]Down in poly_seq_metascape_result_M0_bubbleplot_Summaries_v2.png2019-08-04 12:34 194K 
[IMG]Down in poly_seq_metascape_result_M1_bubbleplot_Summaries_v2.png2019-08-04 12:39 120K 
[IMG]Down in poly_seq_metascape_result_M2_bubbleplot_Summaries_v1.png2019-07-26 19:17 319K 
[IMG]Down in poly_seq_metascape_result_M2_bubbleplot_Summaries_v1b.png2019-07-26 18:58 248K 
[IMG]Down in poly_seq_metascape_result_M2_bubbleplot_Summaries_v2.png2019-08-04 12:06 337K 
[IMG]Down in poly_seq_metascape_result_M2_bubbleplot_TopCateg_Members_v1.png2019-07-26 19:14 294K 
[IMG]Down in poly_seq_metascape_result_M2_bubbleplot_TopCateg_Members_v2.png2019-08-04 10:22 248K 
[TXT]Down in poly_seq_metascape_result_M2_bubbleplot_v1.csv2019-07-26 15:58 1.6K 
[IMG]Down in poly_seq_metascape_result_M2_bubbleplot_v1.png2019-07-26 18:24 339K 
[IMG]M2-TopCateg-DEG-RPKM-heatmap-ave-dualScale-vertLabels.png2019-08-16 14:42 23K 
[IMG]M2-TopCateg-DEG-RPKM-heatmap-ave-dualScale.png2019-08-16 14:24 29K 
[IMG]M2-TopCateg-DEG-RPKM-heatmap-ave-noscale.png2019-08-16 14:31 29K 
[IMG]M2-TopCateg-DEG-RPKM-heatmap-ave.png2019-08-16 14:29 29K 
[IMG]M2-TopCateg-DEG-heatmap-ave-dualScale-vertLabels.png2019-08-16 14:43 23K 
[IMG]M2-TopCateg-DEG-heatmap-ave-dualScale.png2019-08-16 14:43 30K 
[IMG]Max_abundance_log2FC_vs__translation_log2FC_tercile.png2019-07-30 00:51 45K 
[IMG]Max_abundance_log2FC_vs__translation_log2FC_tercile_v2.png2019-09-28 12:24 187K 
[IMG]Max_abundance_log2FC_vs__translation_log2FC_tercile_v3.png2019-09-28 12:40 207K 
[TXT]README-heatmaps1.txt2019-08-16 14:43 4.3K 
[TXT]README-pcg-rnaseq-vs-polysomeseq-log2RPKM-densities.txt2019-07-29 18:25 8.8K 
[TXT]README-rnaseq-vs-polysomeseq-clustering.txt2019-07-17 19:42 2.6K 
[ ]README-rnaseq-vs-polysomeseq-clustering.txt22019-07-19 17:07 14K 
[TXT]README-rnaseq-vs-polysomeseq-log2RPKM-correlations-pcg.txt2019-07-29 16:20 5.1K 
[TXT]README-rnaseq-vs-polysomeseq-log2RPKM-correlations.txt2019-07-27 20:06 4.4K 
[TXT]README-rnaseq-vs-polysomeseq-log2RPKM-densities.txt2019-07-19 18:01 5.7K 
[ ]README-rnaseq-vs-polysomeseq-log2RPKM-densities.txt22019-07-24 10:41 22K 
[ ]README-rnaseq-vs-polysomeseq-log2RPKM-densities.txt32019-07-27 20:31 7.5K 
[TXT]README-rnaseq-vs-polysomeseq-log2RPKM-tests.txt2019-07-27 19:42 19K 
[TXT]README-rnaseq-vs-polysomeseq.txt2019-07-25 10:38 36K 
[IMG]Up in poly_seq_metascape_result_M0_bubbleplot_Summaries_v2.png2019-08-04 12:25 188K 
[IMG]Up in poly_seq_metascape_result_M2_bubbleplot_Summaries_v1.png2019-07-26 19:40 179K 
[IMG]Up in poly_seq_metascape_result_M2_bubbleplot_Summaries_v2.png2019-08-04 12:12 187K 
[ ]bubbleplot.r2019-07-25 18:56 2.7K 
[ ]bubbleplot2.r2019-07-26 19:42 6.4K 
[ ]bubbleplot3.r2019-08-04 12:41 6.5K 
[IMG]custom_bubbleplot_v2.png2019-07-25 17:27 542K 
[TXT]deg-n-genes-pcg-rna-const.txt2019-07-29 17:18 899  
[TXT]deg-n-genes-pcg.txt2019-07-29 16:15 902  
[TXT]deg-n-genes.txt2019-07-25 12:38 902  
[ ]deg-n-genes.xlsx2019-07-24 10:53 5.5K 
[ ]deg-script.r2019-07-25 10:41 31K 
[ ]deg-script2.r2019-07-29 11:23 33K 
[ ]deg-script3.r2019-09-28 10:52 50K 
[ ]deg-script4.r2019-07-29 17:59 35K 
[DIR]deg/2019-07-25 18:21 -  
[IMG]dens_2h_diff_ko_minus_wt_rna_vs_poly.png2019-07-27 19:29 425K 
[ ]dens_2h_ko_rna_vs_poly.pdf2019-07-18 15:00 138K 
[IMG]dens_2h_ko_rna_vs_poly.png2019-07-27 12:51 118K 
[ ]dens_2h_wt_rna_vs_poly.pdf2019-07-18 15:00 139K 
[IMG]dens_2h_wt_rna_vs_poly.png2019-07-27 12:51 118K 
[IMG]dens_6h_diff_ko_minus_wt_rna_vs_poly.png2019-07-27 19:36 407K 
[ ]dens_6h_ko_rna_vs_poly.pdf2019-07-18 15:00 140K 
[IMG]dens_6h_ko_rna_vs_poly.png2019-07-27 12:51 118K 
[ ]dens_6h_wt_rna_vs_poly.pdf2019-07-18 15:00 119K 
[IMG]dens_6h_wt_rna_vs_poly.png2019-07-27 12:51 118K 
[IMG]dens_m0_diff_ko_minus_wt_rna_vs_poly.png2019-07-27 19:25 456K 
[IMG]dens_m0_diff_ko_minus_wt_rna_vs_poly_pcg.png2019-07-29 16:37 413K 
[ ]dens_m0_ko_rna_vs_poly.pdf2019-07-28 19:25 699K 
[IMG]dens_m0_ko_rna_vs_poly.png2019-07-27 13:11 79K 
[ ]dens_m0_wt_rna_vs_poly.pdf2019-07-18 14:58 118K 
[IMG]dens_m0_wt_rna_vs_poly.png2019-07-27 13:11 121K 
[IMG]dens_m1_diff_ko_minus_wt_rna_vs_poly.png2019-07-27 19:26 289K 
[IMG]dens_m1_diff_ko_minus_wt_rna_vs_poly_pcg.png2019-07-29 16:37 283K 
[ ]dens_m1_ko_rna_vs_poly.pdf2019-07-18 14:59 139K 
[IMG]dens_m1_ko_rna_vs_poly.png2019-07-27 12:51 118K 
[ ]dens_m1_wt_rna_vs_poly.pdf2019-07-18 14:59 137K 
[IMG]dens_m1_wt_rna_vs_poly.png2019-07-27 12:51 118K 
[IMG]dens_m2_diff_ko_minus_wt_rna_vs_poly.png2019-07-27 19:26 310K 
[IMG]dens_m2_diff_ko_minus_wt_rna_vs_poly_pcg.png2019-07-29 16:37 281K 
[ ]dens_m2_ko_rna_vs_poly.pdf2019-07-18 15:00 142K 
[IMG]dens_m2_ko_rna_vs_poly.png2019-07-27 13:11 122K 
[ ]dens_m2_wt_rna_vs_poly.pdf2019-07-18 15:00 139K 
[IMG]dens_m2_wt_rna_vs_poly.png2019-07-27 13:12 127K 
[IMG]deregulogram_m1_rna_vs_poly.png2020-07-17 18:06 295K 
[TXT]edgeRgenesExpr-0h.csv2019-07-25 12:40 4.8M 
[TXT]edgeRgenesExpr-0h_pcg.csv2019-07-29 18:20 4.8M 
[TXT]edgeRgenesExpr-2h.csv2019-07-25 12:40 4.8M 
[TXT]edgeRgenesExpr-2h_pcg.csv2019-07-29 18:20 4.8M 
[TXT]edgeRgenesExpr-6h.csv2019-07-25 12:40 4.7M 
[TXT]edgeRgenesExpr-6h_pcg.csv2019-07-29 18:20 4.7M 
[TXT]edgeRgenesExpr-IFN.csv2019-07-25 12:40 4.5M 
[TXT]edgeRgenesExpr-IFN_pcg.csv2019-07-29 18:20 4.5M 
[TXT]edgeRgenesExpr-IL4.csv2019-07-25 12:40 4.7M 
[TXT]edgeRgenesExpr-IL4_pcg.csv2019-07-29 18:20 4.7M 
[TXT]edgeRgenesExpr-KO_M1vsM2.csv2020-07-17 17:45 5.6M 
[TXT]edgeRgenesExpr-WT_M1vsM2.csv2020-07-17 17:44 5.5M 
[TXT]edgeRgenesPolyExpr-0h.csv2019-07-25 12:40 4.6M 
[TXT]edgeRgenesPolyExpr-0h_pcg.csv2019-07-29 18:20 4.0M 
[TXT]edgeRgenesPolyExpr-0h_pcg_rna_const.csv2019-07-29 17:13 3.0M 
[TXT]edgeRgenesPolyExpr-2h.csv2019-07-25 12:40 4.7M 
[TXT]edgeRgenesPolyExpr-2h_pcg.csv2019-07-29 18:20 4.0M 
[TXT]edgeRgenesPolyExpr-2h_pcg_rna_const.csv2019-07-29 17:13 3.0M 
[TXT]edgeRgenesPolyExpr-6h.csv2019-07-25 12:40 4.7M 
[TXT]edgeRgenesPolyExpr-6h_pcg.csv2019-07-29 18:20 4.0M 
[TXT]edgeRgenesPolyExpr-6h_pcg_rna_const.csv2019-07-29 17:13 3.1M 
[TXT]edgeRgenesPolyExpr-IFN.csv2019-07-25 12:40 4.9M 
[TXT]edgeRgenesPolyExpr-IFN_pcg.csv2019-07-29 18:20 4.2M 
[TXT]edgeRgenesPolyExpr-IFN_pcg_rna_const.csv2019-07-29 17:13 3.1M 
[TXT]edgeRgenesPolyExpr-IL4.csv2019-07-25 12:40 4.7M 
[TXT]edgeRgenesPolyExpr-IL4_pcg.csv2019-07-29 18:20 4.1M 
[TXT]edgeRgenesPolyExpr-IL4_pcg_rna_const.csv2019-07-29 17:14 3.3M 
[TXT]edgeRgenesPolyExpr-KO_M1vsM2.csv2020-07-17 17:45 5.6M 
[TXT]edgeRgenesPolyExpr-WT_M1vsM2.csv2020-07-17 17:45 4.9M 
[TXT]heatmap-degs-m0.txt2019-08-09 12:30 8.5K 
[TXT]heatmap-degs-m1.txt2019-08-09 12:29 8.3K 
[TXT]heatmap-degs-m2.txt2019-08-09 12:26 8.6K 
[TXT]heatmap-degs.txt2019-08-09 12:26 8.1K 
[DIR]inverted_foldchanges/2019-07-25 11:46 -  
[ ]m0_ko_rna_vs_poly.pdf2019-07-17 18:18 102K 
[ ]m0_ko_rna_vs_poly2.pdf2019-07-17 19:17 102K 
[TXT]m0_poly_bubbleplot_v1.csv2019-07-25 18:56 1.8K 
[IMG]m0_poly_bubbleplot_v1.png2019-07-25 18:56 652K 
[ ]m0_rna_vs_poly.pdf2019-07-18 12:18 4.5K 
[ ]m0_wt_rna_vs_poly.pdf2019-07-17 18:16 101K 
[ ]m0_wt_rna_vs_poly2.pdf2019-07-17 19:17 101K 
[ ]m1_ko_rna_vs_poly.pdf2019-07-17 18:23 98K 
[ ]m1_ko_rna_vs_poly2.pdf2019-07-17 19:17 98K 
[ ]m1_rna_vs_poly.pdf2019-07-18 12:18 4.5K 
[ ]m1_wt_rna_vs_poly.pdf2019-07-17 18:23 98K 
[ ]m1_wt_rna_vs_poly2.pdf2019-07-17 19:17 98K 
[ ]m2_ko_rna_vs_poly.pdf2019-07-17 18:24 99K 
[ ]m2_ko_rna_vs_poly2.pdf2019-07-17 19:17 99K 
[TXT]m2_poly_bubbleplot_v1.csv2019-07-25 18:48 1.6K 
[IMG]m2_poly_bubbleplot_v1.png2019-07-25 18:42 597K 
[TXT]m2_poly_down_bubbleplot_v1.csv2019-07-25 18:54 1.6K 
[IMG]m2_poly_down_bubbleplot_v1.png2019-07-25 18:54 590K 
[ ]m2_rna_vs_poly.pdf2019-07-18 12:18 4.5K 
[ ]m2_wt_rna_vs_poly.pdf2019-07-17 18:24 99K 
[ ]m2_wt_rna_vs_poly2.pdf2019-07-17 19:17 100K 
[TXT]mails.txt2019-09-27 17:08 74K 
[ ]max_abundance_vs_lower_tercile_translation_log2fc.r2019-09-28 11:23 15K 
[ ]max_abundance_vs_lower_tercile_translation_log2fc_v3.r2019-09-28 12:40 15K 
[TXT]max_rna_vs_poly.csv2019-07-30 14:31 67K 
[TXT]quantitation-stats.txt2019-07-15 16:52 929  
[TXT]r-log-29092020.txt2020-09-29 19:38 24K 
[TXT]rna_poly_2h.csv2019-07-25 12:42 9.6M 
[TXT]rna_poly_2h_pcg.csv2019-07-29 18:22 9.0M 
[TXT]rna_poly_2h_pcg_rna_const.csv2019-07-29 18:01 7.8M 
[TXT]rna_poly_2h_poly_deg_fdr_0.05.csv2019-07-25 12:43 44K 
[TXT]rna_poly_2h_poly_deg_fdr_0.05_pcg.csv2019-07-29 16:11 28K 
[TXT]rna_poly_2h_poly_deg_fdr_0.1.csv2019-07-25 12:43 87K 
[TXT]rna_poly_2h_poly_deg_fdr_0.1_pcg.csv2019-07-29 16:11 55K 
[TXT]rna_poly_2h_poly_deg_pval.csv2019-07-25 12:43 611K 
[TXT]rna_poly_2h_poly_deg_pval_pcg.csv2019-07-29 16:11 547K 
[TXT]rna_poly_2h_rna_deg_fdr_0.05.csv2019-07-25 12:43 306K 
[TXT]rna_poly_2h_rna_deg_fdr_0.05_pcg.csv2019-07-29 16:11 301K 
[TXT]rna_poly_2h_rna_deg_fdr_0.1.csv2019-07-25 12:43 421K 
[TXT]rna_poly_2h_rna_deg_fdr_0.1_pcg.csv2019-07-29 16:11 412K 
[TXT]rna_poly_2h_rna_deg_pval.csv2019-07-25 12:43 1.0M 
[TXT]rna_poly_2h_rna_deg_pval_pcg.csv2019-07-29 16:11 1.0M 
[TXT]rna_poly_6h.csv2019-07-25 12:43 9.5M 
[TXT]rna_poly_6h_pcg.csv2019-07-29 18:23 8.9M 
[TXT]rna_poly_6h_pcg_rna_const.csv2019-07-29 18:01 7.9M 
[TXT]rna_poly_6h_poly_deg_fdr_0.05.csv2019-07-25 12:43 75K 
[TXT]rna_poly_6h_poly_deg_fdr_0.05_pcg.csv2019-07-29 16:11 42K 
[TXT]rna_poly_6h_poly_deg_fdr_0.1.csv2019-07-25 12:43 107K 
[TXT]rna_poly_6h_poly_deg_fdr_0.1_pcg.csv2019-07-29 16:11 64K 
[TXT]rna_poly_6h_poly_deg_pval.csv2019-07-25 12:43 687K 
[TXT]rna_poly_6h_poly_deg_pval_pcg.csv2019-07-29 16:11 611K 
[TXT]rna_poly_6h_rna_deg_fdr_0.05.csv2019-07-25 12:43 35K 
[TXT]rna_poly_6h_rna_deg_fdr_0.05_pcg.csv2019-07-29 16:11 33K 
[TXT]rna_poly_6h_rna_deg_fdr_0.1.csv2019-07-25 12:43 51K 
[TXT]rna_poly_6h_rna_deg_fdr_0.1_pcg.csv2019-07-29 16:11 49K 
[TXT]rna_poly_6h_rna_deg_pval.csv2019-07-25 12:43 353K 
[TXT]rna_poly_6h_rna_deg_pval_pcg.csv2019-07-29 16:11 342K 
[ ]rna_poly_deregulogram1.r2020-09-29 19:35 117  
[TXT]rna_poly_m0.csv2019-07-25 12:41 9.5M 
[TXT]rna_poly_m0_pcg.csv2019-07-29 18:21 9.0M 
[TXT]rna_poly_m0_pcg_rna_const.csv2019-07-29 18:00 7.9M 
[TXT]rna_poly_m0_poly_deg_fdr_0.05.csv2019-07-25 12:43 261K 
[TXT]rna_poly_m0_poly_deg_fdr_0.05_pcg.csv2019-07-29 16:11 237K 
[TXT]rna_poly_m0_poly_deg_fdr_0.1.csv2019-07-25 12:43 348K 
[TXT]rna_poly_m0_poly_deg_fdr_0.1_pcg.csv2019-07-29 16:11 324K 
[TXT]rna_poly_m0_poly_deg_pval.csv2019-07-25 12:43 1.1M 
[TXT]rna_poly_m0_poly_deg_pval_pcg.csv2019-07-29 16:11 1.0M 
[TXT]rna_poly_m0_rna_deg_fdr_0.05.csv2019-07-25 12:43 103K 
[TXT]rna_poly_m0_rna_deg_fdr_0.05_pcg.csv2019-07-29 16:11 100K 
[TXT]rna_poly_m0_rna_deg_fdr_0.1.csv2019-07-25 12:43 135K 
[TXT]rna_poly_m0_rna_deg_fdr_0.1_pcg.csv2019-07-29 16:11 130K 
[TXT]rna_poly_m0_rna_deg_pval.csv2019-07-25 12:43 600K 
[TXT]rna_poly_m0_rna_deg_pval_pcg.csv2019-07-29 16:11 588K 
[TXT]rna_poly_m1.csv2019-07-25 12:41 9.4M 
[TXT]rna_poly_m1_pcg.csv2019-07-29 18:21 8.7M 
[TXT]rna_poly_m1_pcg_rna_const.csv2019-07-29 18:00 7.5M 
[TXT]rna_poly_m1_poly_deg_fdr_0.05.csv2019-07-25 12:43 25K 
[TXT]rna_poly_m1_poly_deg_fdr_0.05_pcg.csv2019-07-29 16:11 20K 
[TXT]rna_poly_m1_poly_deg_fdr_0.1.csv2019-07-25 12:43 44K 
[TXT]rna_poly_m1_poly_deg_fdr_0.1_pcg.csv2019-07-29 16:11 36K 
[TXT]rna_poly_m1_poly_deg_pval.csv2019-07-25 12:43 373K 
[TXT]rna_poly_m1_poly_deg_pval_pcg.csv2019-07-29 16:11 334K 
[TXT]rna_poly_m1_rna_deg_fdr_0.05.csv2019-07-25 12:43 111K 
[TXT]rna_poly_m1_rna_deg_fdr_0.05_pcg.csv2019-07-29 16:11 109K 
[TXT]rna_poly_m1_rna_deg_fdr_0.1.csv2019-07-25 12:43 144K 
[TXT]rna_poly_m1_rna_deg_fdr_0.1_pcg.csv2019-07-29 16:11 142K 
[TXT]rna_poly_m1_rna_deg_pval.csv2019-07-25 12:43 567K 
[TXT]rna_poly_m1_rna_deg_pval_pcg.csv2019-07-29 16:11 554K 
[TXT]rna_poly_m2.csv2019-07-25 12:42 9.4M 
[TXT]rna_poly_m2_pcg.csv2019-07-29 18:22 8.9M 
[TXT]rna_poly_m2_pcg_rna_const.csv2019-07-29 18:00 7.9M 
[TXT]rna_poly_m2_poly_deg_fdr_0.05.csv2019-07-25 12:43 144K 
[TXT]rna_poly_m2_poly_deg_fdr_0.05_pcg.csv2019-07-29 16:11 172K 
[TXT]rna_poly_m2_poly_deg_fdr_0.1.csv2019-07-25 12:43 207K 
[TXT]rna_poly_m2_poly_deg_fdr_0.1_pcg.csv2019-07-29 16:11 265K 
[TXT]rna_poly_m2_poly_deg_pval.csv2019-07-25 12:43 896K 
[TXT]rna_poly_m2_poly_deg_pval_pcg.csv2019-07-29 16:11 893K 
[TXT]rna_poly_m2_rna_deg_fdr_0.05.csv2019-07-25 12:43 92K 
[TXT]rna_poly_m2_rna_deg_fdr_0.05_pcg.csv2019-07-29 16:11 89K 
[TXT]rna_poly_m2_rna_deg_fdr_0.1.csv2019-07-25 12:43 119K 
[TXT]rna_poly_m2_rna_deg_fdr_0.1_pcg.csv2019-07-29 16:11 115K 
[TXT]rna_poly_m2_rna_deg_pval.csv2019-07-25 12:43 579K 
[TXT]rna_poly_m2_rna_deg_pval_pcg.csv2019-07-29 16:11 563K 
[TXT]test-edger.txt2020-07-29 15:12 2.5K 
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