Panagiota Kafasla Fri, Sep 27, 2019 at 1:23 PM To: Martin Reczko Hi Martin, since as I said, I am working on finalizing the Figure, before sending it to DK, I will be asking you for some re-arrangements, or changes. So, for now, could you please remove M0 from the attached figure and please also change the font size, so that they are visible when the figure is inserted in a A4-size paper? This is the only thing for now, but I will probably come back with more. Thank you, Yiota -- Panagiota Kafasla, PhD Institute of Immunology BSRC "Alexander FLEMING" 34 Fleming Street Vari 16672, Greece Tel. 0030 210 9656310 ext. 195 #@ The log10 density of the log2 foldchange in translation is shown against the log2 foldchange in abundance in the figures dens_m0_diff_ko_minus_wt_rna_vs_poly.png dens_m1_diff_ko_minus_wt_rna_vs_poly.png dens_m2_diff_ko_minus_wt_rna_vs_poly.png dens_2h_diff_ko_minus_wt_rna_vs_poly.png dens_6h_diff_ko_minus_wt_rna_vs_poly.png In all cases except 2h, for small foldchanges in abundance a higher density for negative foldchanges in translation can be observed (more 'clouds' close to the negative y axis). For all genes with a absoulute log2 foldchanges in abundance below 2, the log2 folchange in translation is tested using a one-sample, two tailed t-test for non-zero mean. In all cases except 2h, a significant negative log2 folchange in translation is observed: M0 t-test pval 2.794738e-86 mean log2FC_translation: -1.127235e-01 M1 t-test pval 1.660528e-24 mean log2FC_translation: -3.424133e-02 M2 t-test pval 3.039763e-06 mean log2FC_translation: -1.609448e-02 2h t-test pval 3.335461e-36 mean log2FC_translation: 6.336078e-02 6h t-test pval 1.044731e-53 mean log2FC_translation: -6.415852e-02 #@ deg2=all_m0[(all_m0$FDR.x<=0.05)&(!is.na(all_m0$FDR.x)),] summary(deg2[((!is.na(deg2$logFC.x)&(deg2$logFC.x>0))),]) summary(deg2[((!is.na(deg2$logFC.x)&(deg2$logFC.x<0))),]) Min. :-11.1070 Min. : 0.7734 1st Qu.: -3.4404 1st Qu.: 1.1603 Median : -1.8584 Median : 1.7267 Mean : -2.5090 Mean : 2.5525 3rd Qu.: -1.1997 3rd Qu.: 3.4087 Max. : -0.7658 Max. :11.2409 summary(deg[((!is.na(deg$logFC.x)&(deg$logFC.x<0))),]) Min. :-5.270582 1st Qu.:-0.506646 Median :-0.245519 Mean :-0.496496 3rd Qu.:-0.079166 Max. :-0.000269 hdata=hist(deg2$logFC.x,breaks=30,plot=F) hdata$counts[hdata$counts>0] <- log(hdata$counts[hdata$counts>0], 2) plot(hdata) #@ volcano plots for rna/poly m0,1,2 show that poly_down_m2 is strongest from deg-n-genes, fdr_0.05 poly_up_m0 has 391 poly_down_m2 has 215 106, 18093, 215, 171, 17959, 284 #@ dens_m0_diff_ko_minus_wt_rna_vs_poly.png dens_m1_diff_ko_minus_wt_rna_vs_poly.png dens_m2_diff_ko_minus_wt_rna_vs_poly.png Dear Yiota, after the corrections 2 days ago, the picture is a lot clearer now. The correlation between abundance and translation is well above 0.5 in all cases. After a lot of tests for the KO effect, I finally arrived again at the double fold-change density plots. The log10 density of the log2 foldchange in translation is shown against the log2 foldchange in abundance in the figures dens_m0_diff_ko_minus_wt_rna_vs_poly.png dens_m1_diff_ko_minus_wt_rna_vs_poly.png dens_m2_diff_ko_minus_wt_rna_vs_poly.png dens_2h_diff_ko_minus_wt_rna_vs_poly.png dens_6h_diff_ko_minus_wt_rna_vs_poly.png In all cases except 2h, for small foldchanges in abundance a higher density for negative foldchanges in translation can be observed (more 'clouds' close to the negative y axis). For all genes with a absoulute log2 foldchanges in abundance below 2, the log2 folchange in translation is tested using a one-sample, two tailed t-test for non-zero mean. In all cases except 2h, a significant negative log2 folchange in translation is observed: m1 t-test pval 8.826011e-22 mean log2FC_translation: -0.03229144 m0 t-test pval 4.691089e-71 mean log2FC_translation: -0.09986298 m2 t-test pval 0.0006115344 mean log2FC_translation: -0.01169824 2h t-test pval 1.762597e-34 mean log2FC_translation: 0.06005369 6h t-test pval 1.727094e-54 mean log2FC_translation: -0.06498147 This implies that genes with a low abundance, have an overall downregulation after KO. Note that Dab2 (log2FC_rna_m2=0.132107113100571, log2FC_poly_m2=-1.181847) and Dnm2 (log2FC_rna_m2=-0.0899381293206148, log2FC_poly_m2=-1.84820693331423) lie in the relevant regions of the plot for m2. BW, Martin #@~/bak/doc/fleming/kafasla/DKlab/mr/Polysomes/deg/README-final-hur-polysome-processing.txt poly1= read.table("~/bak/doc/fleming/kafasla/DKlab/mr/Polysomes/deg/gene_counts_merged_NCBIM37.64_id.txt",header=T,sep="\t",skip=1) made with: /data/results/tools/rnaseq/subread/subread-1.5.2-source/bin/featureCounts -O -g "gene_id" -t exon -T 8 -a /data/results/reference/mmu/Mus_musculus.NCBIM37.64-toMM9.gtf -o gene_counts_merged_NCBIM37.64_id.txt KO_0h_replicate_I.bam KO_0h_replicate_II.bam KO_2h_replicate_I.bam KO_2h_replicate_II.bam KO_6h_replicate_I.bam KO_6h_replicate_II.bam KO_IFN-gamma_replicate_II.bam KO_IFN_replicate_I.bam KO_IL4_replicate_I.bam KO_IL4_replicate_II.bam WT_0h_replicate_I.bam WT_0h_replicate_II.bam WT_2h_replicate_I.bam WT_2h_replicate_II.bam WT_6h_replicate_I.bam WT_6h_replicate_II.bam WT_IFN-gamma_replicate_I.bam WT_IFN-gamma_replicate_II.bam WT_IL4_replicate_I.bam WT_IL4_replicate_II.bam Geneid Chr Start End Strand Length KO_0h_replicate_I.bam KO_0h_replicate_II.bam KO_2h_replicate_I.bam KO_2h_replicate_II.bam KO_6h_replicate_I.bam KO_6h_replicate_II.bam KO_IFN-gamma_replicate_II.bam KO_IFN_replicate_I.bam KO_IL4_replicate_I.bam KO_IL4_replicate_II.bam WT_0h_replicate_I.bam WT_0h_replicate_II.bam WT_2h_replicate_I.bam WT_2h_replicate_II.bam WT_6h_replicate_I.bam WT_6h_replicate_II.bam WT_IFN-gamma_replicate_I.bam WT_IFN-gamma_replicate_II.bam WT_IL4_replicate_I.bam WT_IL4_replicate_II.bam ENSMUSG00000079102 chr15;chr15;chr15 6279556;6280439;6286245 6279907;6280500;6287206 +;+;+ 1376 3 2 2 6 12 8 4 9 2 2 9 3 11 3 4 10 5 5 8 8 ENSMUSG00000022150 chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15;chr15 6249788;6249788;6249813;6249832;6249868;6279558;6279558;6280439;6286245;6336598;6336748;6336748;6336776;6336777;6336779;6339050;6340120;6366806;6366806;6366806;6366806;6366806;6366806;6366806;6366806;6366806;6366806;6366806;6366806;6368230;6368230;6368230;6368230;6368230;6368230;6368230;6368230;6368230;6368230;6368230;6369739;6369739;6369739;6369739;6369739;6369739;6369739;6369739;6369739;6369739;6372235;6372235;6372235;6372235;6372235;6372235;6372235;6372235;6372235;6372240;6373086;6373086;6373086;6373086;6373086;6373086;6373086;6373086;6373086;6373162;6373926;6373926;6373926;6373926;6373926;6373926;6373926;6373926;6373926;6373926;6374197;6374197;6374197;6374197;6374197;6374197;6374197;6374197;6374197;6374197;6374635;6374635;6374635;6374635;6374635;6374635;6374635;6377331;6377521;6377521;6379296;6379296;6379296;6380954;6380954;6380954;6380954;6380954;6380954;6385165;6385165;6385165;6385165;6385165;6385165;6385440;6386391;6386391;6386391;6386391;6386391;6386391;6386983;6386983;6386983;6386983;6386983;6386983;6388782;6388782;6388782;6388782;6388782;6388782 6249899;6249899;6249899;6249899;6249899;6279907;6279719;6280500;6287206;6336932;6336932;6336932;6336932;6336932;6336932;6339164;6340428;6366994;6366994;6366994;6366994;6366994;6366994;6366994;6366994;6366994;6366924;6366994;6366994;6368369;6368318;6368369;6368369;6368369;6368369;6368369;6368369;6368369;6368369;6368369;6369837;6369837;6369837;6369837;6369837;6369837;6369837;6369837;6369837;6369837;6372366;6372366;6372366;6372366;6372366;6372366;6372366;6372255;6372366;6372366;6373166;6373166;6373166;6373166;6373166;6373166;6373166;6373166;6373166;6373166;6373952;6373952;6373952;6373952;6373952;6373952;6373952;6373952;6373952;6373952;6374250;6374250;6374250;6374250;6374250;6374250;6374250;6374250;6374250;6374250;6375024;6374697;6374697;6374697;6374697;6374697;6374697;6377765;6377541;6377765;6379949;6379949;6379949;6381107;6381107;6381107;6381107;6381107;6381107;6385800;6385800;6385800;6385800;6385800;6385800;6385520;6386497;6386497;6386497;6386497;6386497;6386497;6387050;6387050;6387050;6387050;6387050;6387050;6388907;6389648;6389628;6390705;6390705;6390712 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/data/images/proton/DKlab/mr/rnaseq/stringtie2/gene_counts_merged_k20_NCBIM37.64.txt wt01_trm_k20.bam wt02_trm_k20.bam wt21_trm_k20.bam wt22_trm_k20.bam wt61_trm_k20.bam wt62_trm_k20.bam wtIFN_1_trm_k20.bam wtIFN_2_trm_k20.bam wtIL4_1_trm_k20.bam wtIL4_2_trm_k20.bam KO01_trm_k20.bam KO02_trm_k20.bam KO21_trm_k20.bam KO22_trm_k20.bam KO61_trm_k20.bam KO62_trm_k20.bam KOIFN_1_trm_k20.bam KOIFN_2_trm_k20.bam KOIL4_1_trm_k20.bam KOIL4_2_trm_k20.bam => ENSMUST00000063320 ENSMUSG00000079102 Dab2 protein_coding ENSMUST00000167331 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000162094 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000159046 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000110663 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000110664 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000078019 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000162140 ENSMUSG00000022150 Dab2 processed_transcript ENSMUST00000159490 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000160134 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000163082 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000159552 ENSMUSG00000022150 Dab2 processed_transcript ENSMUST00000161040 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000161812 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000080880 ENSMUSG00000022150 Dab2 protein_coding ENSMUST00000161558 ENSMUSG00000022150 Dab2 retained_intron ~/bak/doc/fleming/kafasla/HuRpaper/v1/20190710/files for Martin/M2_IL4/Copy of RNA-Poly_IL4total.txt GeneName logFC.RNA logCPM.RNA PValue.RNA FDR.RNA KO1CPM.RNA KO2CPM.RNA WT1CPM.RNA WT2CPM.RNA logFC.POLY logCPM.POLY PValue.POLY FDR.POLY KO1CPM.POLY KO2CPM.POLY WT1CPM.POLY WT2CPM.POLY GeneID Length koRPKM.RNA wtRPKM.RNA koRPKM.POLY wtRPKM.POLY Biotype Dab2 0.134825914466127 10.2363122853858 0.320545666482008 1 654.257579663044 750.91398667803 654.89635554064 624.901260400301 -1.18425825128996 9.28398539818348 0.00242080094403763 0.0829233477684073 238.760383838149 181.877930871864 537.337599254295 419.360932940365 ENSMUSG00000079102 1797 702.585783170537 639.89880797047 210.319157355006 478.34926609733 protein_coding KO1CPM.POLY KO2CPM.POLY WT1CPM.POLY WT2CPM.POLY 238.760383838149 181.877930871864 537.337599254295 419.360932940365 x=x_m2[x_m2$geneID=="Dab2",] > x EnsemblID logFC logCPM PValue FDR ENSMUSG00000037490 ENSMUSG00000022150 1.186534 9.280651 0.002301567 0.09438987 ENSMUSG00000084404 ENSMUSG00000079102 1.802533 3.683514 0.037723612 0.42074052 geneID genelength CPM_KO_m2_replicate_I ENSMUSG00000037490 Dab2 2776.27 13.608679 ENSMUSG00000084404 Dab2 1797.00 1.701085 CPM_KO_m2_replicate_II CPM_WT_m2_replicate_I ENSMUSG00000037490 13.504521 1.419536 ENSMUSG00000084404 2.250753 1.419536 CPM_WT_m2_replicate_II RPKM_KO_m2_replicate_I ENSMUSG00000037490 8.935849 4.9017853 ENSMUSG00000084404 4.467924 0.9466249 RPKM_KO_m2_replicate_II RPKM_WT_m2_replicate_I ENSMUSG00000037490 4.864268 0.5113106 ENSMUSG00000084404 1.252506 0.7899479 RPKM_WT_m2_replicate_II RPKM_KO_m2 RPKM_WT_m2 ENSMUSG00000037490 3.218653 4.883027 1.864982 ENSMUSG00000084404 2.486324 1.099565 1.638136 #@ chr15 protein_coding exon 6279556 6279907 . + . gene_id "ENSMUSG00000079102"; transcript_id "ENSMUST00000063320"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-203"; chr15 protein_coding CDS 6279850 6279907 . + 0 gene_id "ENSMUSG00000079102"; transcript_id "ENSMUST00000063320"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-203"; protein_id "ENSMUSP00000065256"; chr15 protein_coding start_codon 6279850 6279852 . + 0 gene_id "ENSMUSG00000079102"; transcript_id "ENSMUST00000063320"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-203"; chr15 protein_coding exon 6280439 6280500 . + . gene_id "ENSMUSG00000079102"; transcript_id "ENSMUST00000063320"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-203"; chr15 protein_coding CDS 6280439 6280500 . + 2 gene_id "ENSMUSG00000079102"; transcript_id "ENSMUST00000063320"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-203"; protein_id "ENSMUSP00000065256"; chr15 protein_coding exon 6286245 6287206 . + . gene_id "ENSMUSG00000079102"; transcript_id "ENSMUST00000063320"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-203"; chr15 protein_coding CDS 6286245 6286547 . + 0 gene_id "ENSMUSG00000079102"; transcript_id "ENSMUST00000063320"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-203"; protein_id "ENSMUSP00000065256"; chr15 protein_coding stop_codon 6286548 6286550 . + 0 gene_id "ENSMUSG00000079102"; transcript_id "ENSMUST00000063320"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-203"; chr15 protein_coding exon 6249788 6249899 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6368230 6368369 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6369739 6369837 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6372235 6372366 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6372235 6372366 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6373086 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6373086 6373166 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6373926 6373952 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6374197 6374250 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6374635 6374697 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6374635 6374697 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6380954 6381107 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6380954 6381107 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6385165 6385800 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6385165 6385800 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6386391 6386497 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6386391 6386497 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding exon 6386983 6387050 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding CDS 6386983 6387042 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; protein_id "ENSMUSP00000077166"; chr15 protein_coding stop_codon 6387043 6387045 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 protein_coding exon 6388782 6390712 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000078019"; exon_number "14"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-003"; chr15 processed_transcript exon 6249788 6249899 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159552"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-011"; chr15 processed_transcript exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159552"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-011"; chr15 processed_transcript exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159552"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-011"; chr15 processed_transcript exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159552"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-011"; chr15 processed_transcript exon 6372235 6372255 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159552"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-011"; chr15 processed_transcript exon 6385440 6385520 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159552"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-011"; chr15 protein_coding exon 6249813 6249899 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159046"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-002"; chr15 protein_coding exon 6279558 6279719 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159046"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-002"; chr15 protein_coding exon 6366806 6366924 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159046"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-002"; chr15 protein_coding CDS 6366904 6366924 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159046"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-002"; protein_id "ENSMUSP00000125452"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159046"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-002"; chr15 protein_coding exon 6249832 6249899 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; protein_id "ENSMUSP00000124478"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding CDS 6368230 6368369 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; protein_id "ENSMUSP00000124478"; chr15 protein_coding exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding CDS 6369739 6369837 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; protein_id "ENSMUSP00000124478"; chr15 protein_coding exon 6372235 6372366 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding CDS 6372235 6372366 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; protein_id "ENSMUSP00000124478"; chr15 protein_coding exon 6373086 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding CDS 6373086 6373166 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; protein_id "ENSMUSP00000124478"; chr15 protein_coding exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding CDS 6373926 6373952 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; protein_id "ENSMUSP00000124478"; chr15 protein_coding exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding CDS 6374197 6374250 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; protein_id "ENSMUSP00000124478"; chr15 protein_coding exon 6374635 6374697 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding CDS 6374635 6374697 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; protein_id "ENSMUSP00000124478"; chr15 protein_coding exon 6377521 6377765 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 protein_coding CDS 6377521 6377538 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; protein_id "ENSMUSP00000124478"; chr15 protein_coding stop_codon 6377539 6377541 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161040"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-004"; chr15 processed_transcript exon 6249868 6249899 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162140"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-005"; chr15 processed_transcript exon 6279558 6279907 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162140"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-005"; chr15 processed_transcript exon 6280439 6280500 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162140"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-005"; chr15 processed_transcript exon 6286245 6287206 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162140"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-005"; chr15 protein_coding exon 6336598 6336932 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6368230 6368369 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6369739 6369837 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6372235 6372366 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6372235 6372366 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6373086 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6373086 6373166 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6373926 6373952 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6374197 6374250 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6374635 6374697 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6374635 6374697 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6379296 6379949 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6379296 6379949 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6380954 6381107 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6380954 6381107 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6385165 6385800 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6385165 6385800 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6386391 6386497 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6386391 6386497 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding exon 6386983 6387050 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "14"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding CDS 6386983 6387042 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "14"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; protein_id "ENSMUSP00000079689"; chr15 protein_coding stop_codon 6387043 6387045 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "14"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding exon 6388782 6390705 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000080880"; exon_number "15"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-001"; chr15 protein_coding exon 6336748 6336932 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6368230 6368369 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6369739 6369837 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6372235 6372366 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6372235 6372366 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6373086 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6373086 6373166 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6373926 6373952 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6374197 6374250 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6379296 6379949 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6379296 6379949 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6380954 6381107 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6380954 6381107 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6385165 6385800 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6385165 6385800 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6386391 6386497 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6386391 6386497 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding exon 6386983 6387050 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding CDS 6386983 6387042 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; protein_id "ENSMUSP00000106292"; chr15 protein_coding stop_codon 6387043 6387045 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding exon 6388782 6390705 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110664"; exon_number "14"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-201"; chr15 protein_coding exon 6336748 6336932 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; protein_id "ENSMUSP00000128860"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding CDS 6368230 6368369 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; protein_id "ENSMUSP00000128860"; chr15 protein_coding exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding CDS 6369739 6369837 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; protein_id "ENSMUSP00000128860"; chr15 protein_coding exon 6372235 6372366 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding CDS 6372235 6372366 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; protein_id "ENSMUSP00000128860"; chr15 protein_coding exon 6373086 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding CDS 6373086 6373166 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; protein_id "ENSMUSP00000128860"; chr15 protein_coding exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding CDS 6373926 6373952 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; protein_id "ENSMUSP00000128860"; chr15 protein_coding exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding CDS 6374197 6374250 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; protein_id "ENSMUSP00000128860"; chr15 protein_coding exon 6374635 6374697 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding CDS 6374635 6374697 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; protein_id "ENSMUSP00000128860"; chr15 protein_coding exon 6377521 6377541 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding CDS 6377521 6377538 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; protein_id "ENSMUSP00000128860"; chr15 protein_coding stop_codon 6377539 6377541 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000167331"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-202"; chr15 protein_coding exon 6336776 6336932 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6368230 6368369 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6369739 6369837 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6372235 6372366 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6372235 6372366 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6373086 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6373086 6373166 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6373926 6373952 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6374197 6374250 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6374635 6374697 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6374635 6374697 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6380954 6381107 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6380954 6381107 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6385165 6385800 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6385165 6385800 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6386391 6386497 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6386391 6386497 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding exon 6386983 6387050 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding CDS 6386983 6387042 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; protein_id "ENSMUSP00000106291"; chr15 protein_coding stop_codon 6387043 6387045 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding exon 6388782 6389628 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000110663"; exon_number "14"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-006"; chr15 protein_coding exon 6336777 6336932 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6368230 6368369 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6369739 6369837 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding exon 6372235 6372366 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6372235 6372366 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding exon 6373086 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6373086 6373166 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6373926 6373952 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6374197 6374250 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding exon 6380954 6381107 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6380954 6381107 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding exon 6385165 6385800 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6385165 6385800 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding exon 6386391 6386497 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6386391 6386497 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "11"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding exon 6386983 6387050 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding CDS 6386983 6387042 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; protein_id "ENSMUSP00000124589"; chr15 protein_coding stop_codon 6387043 6387045 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "12"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding exon 6388782 6389648 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161812"; exon_number "13"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-007"; chr15 protein_coding exon 6336779 6336932 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; protein_id "ENSMUSP00000125021"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding CDS 6368230 6368369 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; protein_id "ENSMUSP00000125021"; chr15 protein_coding exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding CDS 6369739 6369837 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; protein_id "ENSMUSP00000125021"; chr15 protein_coding exon 6372235 6372366 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding CDS 6372235 6372366 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; protein_id "ENSMUSP00000125021"; chr15 protein_coding exon 6373086 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding CDS 6373086 6373166 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; protein_id "ENSMUSP00000125021"; chr15 protein_coding exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding CDS 6373926 6373952 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; protein_id "ENSMUSP00000125021"; chr15 protein_coding exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding CDS 6374197 6374250 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; protein_id "ENSMUSP00000125021"; chr15 protein_coding exon 6374635 6374697 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding CDS 6374635 6374697 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; protein_id "ENSMUSP00000125021"; chr15 protein_coding exon 6377331 6377765 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding CDS 6377331 6377351 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; protein_id "ENSMUSP00000125021"; chr15 protein_coding stop_codon 6377352 6377354 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000160134"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-012"; chr15 protein_coding exon 6339050 6339164 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159490"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-009"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159490"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-009"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159490"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-009"; protein_id "ENSMUSP00000124145"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159490"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-009"; chr15 protein_coding exon 6368230 6368318 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159490"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-009"; chr15 protein_coding CDS 6368230 6368318 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000159490"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-009"; protein_id "ENSMUSP00000124145"; chr15 protein_coding exon 6340120 6340428 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162094"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-010"; chr15 protein_coding exon 6366806 6366994 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162094"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-010"; chr15 protein_coding CDS 6366904 6366994 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162094"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-010"; protein_id "ENSMUSP00000125696"; chr15 protein_coding start_codon 6366904 6366906 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162094"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-010"; chr15 protein_coding exon 6368230 6368369 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162094"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-010"; chr15 protein_coding CDS 6368230 6368369 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162094"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-010"; protein_id "ENSMUSP00000125696"; chr15 protein_coding exon 6369739 6369837 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162094"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-010"; chr15 protein_coding CDS 6369739 6369837 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000162094"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-010"; protein_id "ENSMUSP00000125696"; chr15 protein_coding exon 6372240 6372366 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding CDS 6372240 6372366 . + 1 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; protein_id "ENSMUSP00000124996"; chr15 protein_coding exon 6373086 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding CDS 6373086 6373166 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; protein_id "ENSMUSP00000124996"; chr15 protein_coding exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding CDS 6373926 6373952 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; protein_id "ENSMUSP00000124996"; chr15 protein_coding exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding CDS 6374197 6374250 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; protein_id "ENSMUSP00000124996"; chr15 protein_coding exon 6379296 6379949 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding CDS 6379296 6379949 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "5"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; protein_id "ENSMUSP00000124996"; chr15 protein_coding exon 6380954 6381107 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding CDS 6380954 6381107 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "6"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; protein_id "ENSMUSP00000124996"; chr15 protein_coding exon 6385165 6385800 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding CDS 6385165 6385800 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "7"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; protein_id "ENSMUSP00000124996"; chr15 protein_coding exon 6386391 6386497 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding CDS 6386391 6386497 . + 2 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "8"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; protein_id "ENSMUSP00000124996"; chr15 protein_coding exon 6386983 6387050 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding CDS 6386983 6387042 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; protein_id "ENSMUSP00000124996"; chr15 protein_coding stop_codon 6387043 6387045 . + 0 gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "9"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 protein_coding exon 6388782 6388907 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000163082"; exon_number "10"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-008"; chr15 retained_intron exon 6373162 6373166 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161558"; exon_number "1"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-013"; chr15 retained_intron exon 6373926 6373952 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161558"; exon_number "2"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-013"; chr15 retained_intron exon 6374197 6374250 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161558"; exon_number "3"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-013"; chr15 retained_intron exon 6374635 6375024 . + . gene_id "ENSMUSG00000022150"; transcript_id "ENSMUST00000161558"; exon_number "4"; gene_name "Dab2"; gene_biotype "protein_coding"; transcript_name "Dab2-013"; #@Dear Yiota, below is a text summary of last day's findings: 'rna' denote the RPKM in RNAseq, 'poly' denote the RPKM in polysomeSeq. a) compare cor(log2(rna),log2(poly)) in WT vs cor(log2(rna),log2(poly)) in KO, using Fisher's z transformation: - m0 has sig. higher cor(log2(rna),log2(poly)) in WT than cor(log2(rna),log2(poly)) in KO (p-value = 0.003241865) b) compare variances of log2foldchange(rna,poly) WT vs log2foldchange(rna,poly) KO, using F test: - m0 has sig. higher variance in KO, p-value = 1.008e-07 - m2 has sig. higher variance in WT, p-value = 2.445e-05 c) compare distributions of log2foldchange(rna,poly) WT vs log2foldchange(rna,poly) KO, using Kolmogorov-Smirnov test: - m0 has different distributions, p-value = 0.03124 - m2 has different distributions, p-value = 0.0004635 - 6h has different distributions, p-value = 0.00375 d) paired test of non zero difference log2foldchange(rna,poly) WT - log2foldchange(rna,poly) KO, using Students t-test: m0: mean of the differences 0.01258971 p-value = 0.08012 m1: mean of the differences 0.02743454 p-value = 2.694e-06 m2: mean of the differences -0.07737865 p-value < 2.2e-16 2h: mean of the differences -0.06329435 p-value < 2.2e-16 6h: mean of the differences -0.06487649 p-value < 2.2e-16 BW, Martin #@ m0,m2,6h are significant for: ( all2_m0=all_m0[(log2(1+all_m0[,17])<1)&(log2(1+all_m0[,16])<1),] ks.test(log2(1+(all2_m0[,33])),log2(1+(all2_m0[,32]))) Two-sample Kolmogorov-Smirnov test data: log2(1 + (all2_m0[, 33])) and log2(1 + (all2_m0[, 32])) D = 0.042986, p-value = 5.815e-05 wilcox.test(log2(1+(all2_m0[,33])),log2(1+(all2_m0[,32]))) Wilcoxon rank sum test with continuity correction data: log2(1 + (all2_m0[, 33])) and log2(1 + (all2_m0[, 32])) W = 16337000, p-value = 0.0386 ) all2_m0=all_m0[(log2(1+all_m0[,17])<2)&(log2(1+all_m0[,16])<2),] wilcox.test(log2(1+(all2_m0[,33])),log2(1+(all2_m0[,32]))) Wilcoxon rank sum test with continuity correction data: log2(1 + (all2_m0[, 33])) and log2(1 + (all2_m0[, 32])) W = 28052000, p-value = 0.009731 alternative hypothesis: true location shift is not equal to 0 median(log2(1+(all2_m0[,33]))) [1] 2.411377 median(log2(1+(all2_m0[,32]))) [1] 2.313707 #wt>ko all2_m0=all_m0[(log2(1+all_m0[,32])<2)&(log2(1+all_m0[,33])<2),] wilcox.test(log2(1+(all2_m0[,16])),log2(1+(all2_m0[,17]))) W = 9671800, p-value = 0.8287 all2_m0=all_m0[(log2(1+all_m0[,32])<1)&(log2(1+all_m0[,33])<1),] wilcox.test(log2(1+(all2_m0[,16])),log2(1+(all2_m0[,17]))) W = 394130, p-value = 0.9896 all2_m1=all_m1[(log2(1+all_m1[,17])<2)&(log2(1+all_m1[,16])<2),] wilcox.test(log2(1+(all2_m1[,33])),log2(1+(all2_m1[,32]))) W = 28448000, p-value = 0.8214 all2_m1=all_m1[(log2(1+all_m1[,17])<1)&(log2(1+all_m1[,16])<1),] wilcox.test(log2(1+(all2_m1[,33])),log2(1+(all2_m1[,32]))) W = 16355000, p-value = 0.764 all2_m2=all_m2[(log2(1+all_m2[,17])<2)&(log2(1+all_m2[,16])<2),] wilcox.test(log2(1+(all2_m2[,33])),log2(1+(all2_m2[,32]))) W = 23757000, p-value = 7.789e-60 all2_2h=all_2h[(log2(1+all_2h[,17])<2)&(log2(1+all_2h[,16])<2),] wilcox.test(log2(1+(all2_2h[,33])),log2(1+(all2_2h[,32]))) W = 29820000, p-value = 0.3855 all2_6h=all_6h[(log2(1+all_6h[,17])<2)&(log2(1+all_6h[,16])<2),] wilcox.test(log2(1+(all2_6h[,33])),log2(1+(all2_6h[,32]))) W = 32859000, p-value = 0.005982 t.test(log2(1+(all2_6h[,33])),log2(1+(all2_6h[,32]))) t = -2.1268, df = 16416, p-value = 0.03345 alternative hypothesis: true difference in means is not equal to 0 95 percent confidence interval: -0.107209169 -0.004373392 sample estimates: mean of x mean of y 2.705478 2.761269 # wt