glmmPQL                 package:MASS                 R Documentation

Fit Generalized Linear Mixed Models via PQL

Description:

     Fit a GLMM model with multivariate normal random effects, using
     Penalized Quasi-Likelihood.

Usage:

     glmmPQL(fixed, random, family, data, correlation, weights,
             control, niter = 10, verbose = TRUE, ...)

Arguments:

   fixed: a two-sided linear formula giving fixed-effects part of the
          model. 

  random: a formula or list of formulae describing the random effects. 

  family: a GLM family. 

    data: an optional data frame used as the first place to find
          variables in the formulae. 

correlation: an optional correlation structure. 

 weights: optional case weights as in 'glm'. 

 control: an optional argument to be passed to 'lme'. 

   niter: maximum number of iterations. 

 verbose: logical: print out record of iterations? 

     ...: Further arguments for 'lme'. 

Details:

     'glmmPQL' works by repeated calls to 'lme', so package 'nlme' will
     be loaded at first use if necessary.

Value:

     A object of class '"lme"': see 'lmeObject'.

References:

     Schall, R. (1991) Estimation in generalized linear models with
     random effects. _Biometrika_ *78*, 719-727.

     Breslow, N. E. and Clayton, D. G. (1993) Approximate inference in
     generalized linear mixed models. _Journal of the American
     Statistical Association_ *88*, 9-25.

     Wolfinger, R. and O'Connell, M. (1993) Generalized linear mixed
     models: a pseudo-likelihood approach. _Journal of Statistical
     Computation and Simulation_ *48*, 233-243.

     Venables, W. N. and Ripley, B. D. (2002) _Modern Applied
     Statistics with S._ Fourth edition.  Springer.

See Also:

     'lme'

Examples:

     library(nlme) # will be loaded automatically if omitted
     summary(glmmPQL(y ~ trt + I(week > 2), random = ~ 1 | ID,
                     family = binomial, data = bacteria))

