reporter               package:Biobase               R Documentation

Example data.frame representing reporter information

Description:

     The 'reporter' object is a 500 by 1 data frame. The rows represent
     the 500 probe IDs in the 'geneData' data. The values in 'reporter'
     are the predefined probe types for the probes. 'reporter' is used
     in conjunction with the 'geneData' object and its associates.

Usage:

     data(reporter)

Format:

     A 500 by 1 data frame

Details:

     There are 10 predefined probe types:


   'AFFX-' Quality Control (QC)

   '_f_' SequenceFamily

   '_g_' CommonGroups

   '_s_' SimilarityConstraint

   '_r_' RulesDropped

   '_i_' Incomplete

   '_b_' AmbiguousProbeSet

   '_l_' LongProbeSet

   '_at' AntiSenseTarget

   '_st' SenseTarget

Source:

     Affymetrix GeneChip Expression Analysis Data Analysis Fundamentals
     (<URL:
     http://www.affymetrix.com/Auth/support/downloads/manuals/data_analysis_fundamentals_manual.pdf>)

Examples:

     data(reporter)
     ## maybe str(reporter) ; plot(reporter) ...

