metaseqR report

Summary

Analysis summary

Summary: The raw bam files, one for each RNA-Seq sample, were summarized to read counts table, using the Bioconductor package GenomicRanges. In the final read counts table, each row represented each column one RNA-Seq sample and each cell, the corresponding read counts associated with each row and column.The gene counts table was normalized for inherent systematic or experimental biases (e.g. sequencing depth, gene length, GC content bias etc.) using the Bioconductor package DESeq after removing genes that had zero counts over all the RNA-Seq samples (25760 genes). The output of the normalization algorithm was a table with normalized counts, which can be used for differential expression analysis with statistical algorithms developed specifically for count data. Prior to the statistical testing procedure, the gene read counts were filtered for possible artifacts that could affect the subsequent statistical testing procedures. Genes presenting any of the following were excluded from further analysis: i) genes with length less than 500 (4165 genes), ii) genes whose average reads per 100 bp was less than the 25^th quantile of the total normalized distribution of average reads per 100bp (0 genes with cutoff value 0 average reads per 100 bp), iii) genes with read counts below the median read counts of the total normalized count distribution (11469 genes with cutoff value 7 normalized read counts), iv) genes whose biotype matched the following: rRNA, TR_V_pseudogene, TR_J_pseudogene, IG_C_pseudogene, IG_J_pseudogene, IG_V_pseudogene (85 genes). The total number of genes excluded due to the application of gene filters was 4251. The total (unified) number of genes excluded due to the application of all filters was 38737. The resulting gene counts table was subjected to differential expression analysis for the contrasts Wt versus C_221_222, Wt versus Tg197, Tg197 versus Tg197_C, C_221_222 versus Tg197_C using the Bioconductor package DESeq. The final numbers of differentially expressed genes were (per contrast): for the contrast Wt versus C_221_222, 358 (15) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 116 (0) were up-regulated, 145 (15) were down-regulated and 97 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale, for the contrast Wt versus Tg197, 943 (185) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 330 (108) were up-regulated, 311 (76) were down-regulated and 302 (1) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale, for the contrast Tg197 versus Tg197_C, 1502 (148) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 427 (81) were up-regulated, 484 (67) were down-regulated and 591 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale, for the contrast C_221_222 versus Tg197_C, 1600 (455) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 525 (227) were up-regulated, 624 (228) were down-regulated and 451 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale. Literature references for all the algorithms used can be found at the end of this report.

Input options

Read counts file: imported sam/bam/bed files
Conditions: Wt, C_221_222, Tg197, Tg197_C
Samples included: GK3R188-Wt1, GK3R189-Wt2, GK3R190-C1, GK3R191-C2, GK3R192-C3, GK3R193-Tg197-1, GK3R194-Tg197-2, GK3R195-Tg197-3, GK3R196-Tg197-C1, GK3R198-Tg197-C3
Samples excluded: none
Requested contrasts: Wt_vs_C_221_222, Wt_vs_Tg197, Tg197_vs_Tg197_C, C_221_222_vs_Tg197_C
Library sizes:

GK3R188-Wt1: 1825168
GK3R189-Wt2: 5240467
GK3R190-C1: 4965142
GK3R191-C2: 5035527
GK3R192-C3: 6160469
GK3R193-Tg197-1: 6274376
GK3R194-Tg197-2: 6842798
GK3R195-Tg197-3: 6957832
GK3R196-Tg197-C1: 6105555
GK3R198-Tg197-C3: 4428560

Annotation: download
Organism: mouse (Mus musculus), genome version alias mm10
Annotation source: Ensembl genomes
Count type: utr
3' UTR flanking :: 500
Exon filters: none applied
Gene filters: length, avg.reads, expression, biotype

length
- length: 500

avg.reads
- average.per.bp: 100
- quantile: 0.25

expression
- median: TRUE
- mean: FALSE
- quantile: NA
- known: NA
- custom: NA

biotype
- pseudogene: FALSE
- lincRNA: FALSE
- protein_coding: FALSE
- antisense: FALSE
- processed_transcript: FALSE
- snRNA: FALSE
- sense_intronic: FALSE
- miRNA: FALSE
- misc_RNA: FALSE
- snoRNA: FALSE
- rRNA: TRUE
- polymorphic_pseudogene: FALSE
- sense_overlapping: FALSE
- three_prime_overlapping_ncrna: FALSE
- TR_V_gene: FALSE
- TR_V_pseudogene: TRUE
- TR_D_gene: FALSE
- TR_J_gene: FALSE
- TR_C_gene: FALSE
- TR_J_pseudogene: TRUE
- IG_C_gene: FALSE
- IG_C_pseudogene: TRUE
- IG_J_gene: FALSE
- IG_J_pseudogene: TRUE
- IG_D_gene: FALSE
- IG_V_gene: FALSE
- IG_V_pseudogene: TRUE

Filter application: after normalization
Normalization algorithm: DESeq
Normalization arguments: locfunc

[[list(locfunc = function (x, na.rm = FALSE, ...) standardGeneric("median"))locfunc

Statistical algorithm(s): DESeq
Statistical arguments for DESeq: method, sharingMode, fitType

method: blind
sharingMode: fit-only
fitType: local

Meta-analysis method: no meta-analysis, reported p-values from the first supplied statistical algorithm
Multiple testing correction: Benjamini-Hochberg FDR
p-value threshold: 0.05
Logarithmic tranformation offset: 1
Analysis preset: not available
Quality control plots: multidimensional scaling, biotype detection, biotype counts, sample and biotype saturation, filtered biotypes, correlation heatmap and correlogram, pairwise scatterplots between samples, boxplots, GC-content bias, transcript length bias, DEG biotype detection, volcano plot, DEG heatmap
Figure format: png, pdf
Output directory: ~/GKlab/run_403/metaseqr_GKlab_run403-wo-GK3R197
Output data: Annotation, p-value, Adjusted p-value (FDR), Fold change, Read counts
Output scale(s): log2 scale, Reads per Gene Model
Output values: Normalized values
Output statistics: Mean, Median, Standard deviation, Median Absolute Deviation (MAD), Coefficient of Variation, Robust Coefficient of Variation
Total run time: 33 minutes 19 seconds

Filtered genes

Number of filtered genes: 38737 which is the union of

Filtered because of zero reads: 25760
Filtered because of exon filters: 0
Filtered because of gene filters: 12977 which is the union of
- length: 4165 genes with filter cutoff value 500
- avg.reads: 0 genes with filter cutoff value 0
- expression: 11469 genes further decomposed to (filter name, filtered genes, filter cutoff):
- - median: 11469 genes with filter cutoff value 7
- biotype: 85 genes with filter cutoff value rRNA, TR_V_pseudogene, TR_J_pseudogene, IG_C_pseudogene, IG_J_pseudogene, IG_V_pseudogene

Differentially expressed genes

Number of differentially expressed genes per contrast:

Wt_vs_C_221_222: 358 (15) statistically significant genes of which 116 (0) up regulated, 145 (15) down regulated and 97 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.
Wt_vs_Tg197: 943 (185) statistically significant genes of which 330 (108) up regulated, 311 (76) down regulated and 302 (1) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.
Tg197_vs_Tg197_C: 1502 (148) statistically significant genes of which 427 (81) up regulated, 484 (67) down regulated and 591 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.
C_221_222_vs_Tg197_C: 1600 (455) statistically significant genes of which 525 (227) up regulated, 624 (228) down regulated and 451 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.

Run log

[ 2018-06-18 15:18:44 ] INFO 2018-06-18 15:18:44: Data processing started...
[ 2018-06-18 15:18:44 ] INFO Read counts file: imported sam/bam/bed files
[ 2018-06-18 15:18:44 ] INFO Conditions: Wt, C_221_222, Tg197, Tg197_C
[ 2018-06-18 15:18:44 ] INFO Samples to include: GK3R188-Wt1, GK3R189-Wt2, GK3R190-C1, GK3R191-C2, GK3R192-C3, GK3R193-Tg197-1, GK3R194-Tg197-2, GK3R195-Tg197-3, GK3R196-Tg197-C1, GK3R198-Tg197-C3
[ 2018-06-18 15:18:44 ] INFO Samples to exclude: none
[ 2018-06-18 15:18:44 ] INFO Requested contrasts: Wt_vs_C_221_222, Wt_vs_Tg197, Tg197_vs_Tg197_C, C_221_222_vs_Tg197_C
[ 2018-06-18 15:18:44 ] INFO Annotation: download
[ 2018-06-18 15:18:44 ] INFO Organism: mm10
[ 2018-06-18 15:18:44 ] INFO Reference source: ensembl
[ 2018-06-18 15:18:44 ] INFO Count type: utr
[ 2018-06-18 15:18:44 ] INFO 3' UTR flanking: 500
[ 2018-06-18 15:18:44 ] INFO Exon filters: none applied
[ 2018-06-18 15:18:44 ] INFO Gene filters: length, avg.reads, expression, biotype
[ 2018-06-18 15:18:44 ] INFO length:
[ 2018-06-18 15:18:44 ] INFO length: 500
[ 2018-06-18 15:18:44 ] INFO avg.reads:
[ 2018-06-18 15:18:44 ] INFO average.per.bp: 100
[ 2018-06-18 15:18:44 ] INFO quantile: 0.25
[ 2018-06-18 15:18:44 ] INFO expression:
[ 2018-06-18 15:18:44 ] INFO median: TRUE
[ 2018-06-18 15:18:44 ] INFO mean: FALSE
[ 2018-06-18 15:18:44 ] INFO quantile: NA
[ 2018-06-18 15:18:44 ] INFO known: NA
[ 2018-06-18 15:18:44 ] INFO custom: NA
[ 2018-06-18 15:18:44 ] INFO biotype:
[ 2018-06-18 15:18:44 ] INFO pseudogene: FALSE
[ 2018-06-18 15:18:44 ] INFO lincRNA: FALSE
[ 2018-06-18 15:18:44 ] INFO protein_coding: FALSE
[ 2018-06-18 15:18:44 ] INFO antisense: FALSE
[ 2018-06-18 15:18:44 ] INFO processed_transcript: FALSE
[ 2018-06-18 15:18:44 ] INFO snRNA: FALSE
[ 2018-06-18 15:18:44 ] INFO sense_intronic: FALSE
[ 2018-06-18 15:18:44 ] INFO miRNA: FALSE
[ 2018-06-18 15:18:44 ] INFO misc_RNA: FALSE
[ 2018-06-18 15:18:44 ] INFO snoRNA: FALSE
[ 2018-06-18 15:18:44 ] INFO rRNA: TRUE
[ 2018-06-18 15:18:44 ] INFO polymorphic_pseudogene: FALSE
[ 2018-06-18 15:18:44 ] INFO sense_overlapping: FALSE
[ 2018-06-18 15:18:44 ] INFO three_prime_overlapping_ncrna: FALSE
[ 2018-06-18 15:18:44 ] INFO TR_V_gene: FALSE
[ 2018-06-18 15:18:44 ] INFO TR_V_pseudogene: TRUE
[ 2018-06-18 15:18:44 ] INFO TR_D_gene: FALSE
[ 2018-06-18 15:18:44 ] INFO TR_J_gene: FALSE
[ 2018-06-18 15:18:44 ] INFO TR_C_gene: FALSE
[ 2018-06-18 15:18:44 ] INFO TR_J_pseudogene: TRUE
[ 2018-06-18 15:18:44 ] INFO IG_C_gene: FALSE
[ 2018-06-18 15:18:44 ] INFO IG_C_pseudogene: TRUE
[ 2018-06-18 15:18:44 ] INFO IG_J_gene: FALSE
[ 2018-06-18 15:18:44 ] INFO IG_J_pseudogene: TRUE
[ 2018-06-18 15:18:44 ] INFO IG_D_gene: FALSE
[ 2018-06-18 15:18:44 ] INFO IG_V_gene: FALSE
[ 2018-06-18 15:18:44 ] INFO IG_V_pseudogene: TRUE
[ 2018-06-18 15:18:44 ] INFO Filter application: postnorm
[ 2018-06-18 15:18:44 ] INFO Normalization algorithm: deseq
[ 2018-06-18 15:18:44 ] INFO Normalization arguments:
[ 2018-06-18 15:18:44 ] INFO locfunc:
[ 2018-06-18 15:18:44 ] INFO [[
[ 2018-06-18 15:18:44 ] INFO list(locfunc = function (x, na.rm = FALSE, ...) standardGeneric("median"))
[ 2018-06-18 15:18:44 ] INFO locfunc
[ 2018-06-18 15:18:44 ] INFO Statistical algorithm: deseq
[ 2018-06-18 15:18:44 ] INFO Statistical arguments:
[ 2018-06-18 15:18:44 ] INFO deseq: blind, fit-only, local
[ 2018-06-18 15:18:44 ] INFO Meta-analysis method: none
[ 2018-06-18 15:18:44 ] INFO Multiple testing correction: BH
[ 2018-06-18 15:18:44 ] INFO p-value threshold: 0.05
[ 2018-06-18 15:18:44 ] INFO Logarithmic transformation offset: 1
[ 2018-06-18 15:18:44 ] INFO Quality control plots: mds, biodetection, countsbio, saturation, readnoise, filtered, correl, pairwise, boxplot, gcbias, lengthbias, biodist, volcano, deheatmap
[ 2018-06-18 15:18:44 ] INFO Figure format: png, pdf
[ 2018-06-18 15:18:44 ] INFO Output directory: ~/GKlab/run_403/metaseqr_GKlab_run403-wo-GK3R197
[ 2018-06-18 15:18:44 ] INFO Output data: annotation, p.value, adj.p.value, fold.change, counts, flags
[ 2018-06-18 15:18:44 ] INFO Output scale(s): log2, rpgm
[ 2018-06-18 15:18:44 ] INFO Output values: normalized
[ 2018-06-18 15:18:44 ] INFO Downloading gene annotation for mm10...
[ 2018-06-18 15:18:58 ] INFO Downloading transcript annotation for mm10...
[ 2018-06-18 15:20:47 ] INFO Converting annotation to GenomicRanges object...
[ 2018-06-18 15:20:48 ] INFO Merging transcript 3' UTRs to create unique gene/transcript models...
[ 2018-06-18 15:29:19 ] INFO Flanking merged transcript 3' UTRs per 500bp...
[ 2018-06-18 15:29:23 ] INFO Reading bam file GK3R188-Wt1.bam for sample with name GK3R188-Wt1. This might take some time...
[ 2018-06-18 15:29:23 ] INFO Reading bam file GK3R189-Wt2.bam for sample with name GK3R189-Wt2. This might take some time...
[ 2018-06-18 15:29:23 ] INFO Reading bam file GK3R190-C1.bam for sample with name GK3R190-C1. This might take some time...
[ 2018-06-18 15:29:23 ] INFO Reading bam file GK3R191-C2.bam for sample with name GK3R191-C2. This might take some time...
[ 2018-06-18 15:29:23 ] INFO Reading bam file GK3R192-C3.bam for sample with name GK3R192-C3. This might take some time...
[ 2018-06-18 15:29:23 ] INFO Reading bam file GK3R193-Tg197-1.bam for sample with name GK3R193-Tg197-1. This might take some time...
[ 2018-06-18 15:29:26 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:29:26 ] INFO ...for single-end reads...
[ 2018-06-18 15:29:26 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:29:33 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:29:33 ] INFO ...for single-end reads...
[ 2018-06-18 15:29:33 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:29:33 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:29:33 ] INFO ...for single-end reads...
[ 2018-06-18 15:29:33 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:29:33 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:29:33 ] INFO ...for single-end reads...
[ 2018-06-18 15:29:33 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:29:34 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:29:34 ] INFO ...for single-end reads...
[ 2018-06-18 15:29:34 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:29:34 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:29:34 ] INFO ...for single-end reads...
[ 2018-06-18 15:29:34 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:29:42 ] INFO Reading bam file GK3R194-Tg197-2.bam for sample with name GK3R194-Tg197-2. This might take some time...
[ 2018-06-18 15:29:54 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:29:54 ] INFO ...for single-end reads...
[ 2018-06-18 15:29:54 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:30:22 ] INFO Reading bam file GK3R195-Tg197-3.bam for sample with name GK3R195-Tg197-3. This might take some time...
[ 2018-06-18 15:30:24 ] INFO Reading bam file GK3R196-Tg197-C1.bam for sample with name GK3R196-Tg197-C1. This might take some time...
[ 2018-06-18 15:30:24 ] INFO Reading bam file GK3R198-Tg197-C3.bam for sample with name GK3R198-Tg197-C3. This might take some time...
[ 2018-06-18 15:30:32 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:30:32 ] INFO ...for single-end reads...
[ 2018-06-18 15:30:32 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:30:35 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:30:35 ] INFO ...for single-end reads...
[ 2018-06-18 15:30:35 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:30:35 ] INFO Counting reads overlapping with given annotation...
[ 2018-06-18 15:30:35 ] INFO ...for single-end reads...
[ 2018-06-18 15:30:35 ] INFO ...assuming forward sequenced reads...
[ 2018-06-18 15:31:24 ] INFO Exporting raw read counts table to ~/GKlab/run_403/metaseqr_GKlab_run403-wo-GK3R197/lists/raw_counts_table.txt.gz
[ 2018-06-18 15:31:27 ] INFO Checking chromosomes in transcript counts and gene annotation...
[ 2018-06-18 15:31:27 ] INFO Processing transcripts...
[ 2018-06-18 15:31:27 ] INFO Separating transcripts (UTR regions) per gene for GK3R188-Wt1...
[ 2018-06-18 15:32:39 ] INFO Separating transcripts (UTR regions) per gene for GK3R189-Wt2...
[ 2018-06-18 15:33:55 ] INFO Separating transcripts (UTR regions) per gene for GK3R190-C1...
[ 2018-06-18 15:35:11 ] INFO Separating transcripts (UTR regions) per gene for GK3R191-C2...
[ 2018-06-18 15:36:26 ] INFO Separating transcripts (UTR regions) per gene for GK3R192-C3...
[ 2018-06-18 15:37:43 ] INFO Separating transcripts (UTR regions) per gene for GK3R193-Tg197-1...
[ 2018-06-18 15:39:00 ] INFO Separating transcripts (UTR regions) per gene for GK3R194-Tg197-2...
[ 2018-06-18 15:40:17 ] INFO Separating transcripts (UTR regions) per gene for GK3R195-Tg197-3...
[ 2018-06-18 15:41:36 ] INFO Separating transcripts (UTR regions) per gene for GK3R196-Tg197-C1...
[ 2018-06-18 15:42:56 ] INFO Separating transcripts (UTR regions) per gene for GK3R198-Tg197-C3...
[ 2018-06-18 15:44:14 ] INFO Saving gene model to ~/GKlab/run_403/metaseqr_GKlab_run403-wo-GK3R197/data/gene_model.RData
[ 2018-06-18 15:44:17 ] INFO Summarizing count data...
[ 2018-06-18 15:44:24 ] INFO Removing genes with zero counts in all samples...
[ 2018-06-18 15:44:24 ] INFO Normalizing with: deseq
[ 2018-06-18 15:44:24 ] INFO Applying gene filter length...
[ 2018-06-18 15:44:24 ] INFO Threshold below which ignored: 500
[ 2018-06-18 15:44:24 ] INFO Applying gene filter avg.reads...
[ 2018-06-18 15:44:24 ] INFO Threshold below which ignored: 0
[ 2018-06-18 15:44:24 ] INFO Applying gene filter expression...
[ 2018-06-18 15:44:25 ] INFO Threshold below which ignored: 7
[ 2018-06-18 15:44:25 ] INFO Applying gene filter biotype...
[ 2018-06-18 15:44:25 ] INFO Biotypes ignored: rRNA, TR_V_pseudogene, TR_J_pseudogene, IG_C_pseudogene, IG_J_pseudogene, IG_V_pseudogene
[ 2018-06-18 15:44:25 ] INFO 38737 genes filtered out
[ 2018-06-18 15:44:25 ] INFO 14941 genes remain after filtering
[ 2018-06-18 15:44:25 ] INFO Running statistical tests with: deseq
[ 2018-06-18 15:44:25 ] INFO Contrast: Wt_vs_C_221_222
[ 2018-06-18 15:44:37 ] INFO Contrast: Wt_vs_Tg197
[ 2018-06-18 15:44:52 ] INFO Contrast: Tg197_vs_Tg197_C
[ 2018-06-18 15:45:08 ] INFO Contrast: C_221_222_vs_Tg197_C
[ 2018-06-18 15:45:22 ] INFO Contrast Wt_vs_C_221_222: found 358 genes
[ 2018-06-18 15:45:22 ] INFO Contrast Wt_vs_Tg197: found 943 genes
[ 2018-06-18 15:45:22 ] INFO Contrast Tg197_vs_Tg197_C: found 1502 genes
[ 2018-06-18 15:45:22 ] INFO Contrast C_221_222_vs_Tg197_C: found 1600 genes
[ 2018-06-18 15:45:22 ] INFO Exporting and compressing normalized read counts table to ~/GKlab/run_403/metaseqr_GKlab_run403-wo-GK3R197/lists/normalized_counts_table.txt
[ 2018-06-18 15:45:23 ] INFO Building output files...
[ 2018-06-18 15:45:26 ] INFO Contrast: Wt_vs_C_221_222
[ 2018-06-18 15:45:26 ] INFO Adding non-filtered data...
[ 2018-06-18 15:45:26 ] INFO binding annotation...
[ 2018-06-18 15:45:26 ] INFO binding p-values...
[ 2018-06-18 15:45:27 ] INFO binding FDRs...
[ 2018-06-18 15:45:27 ] INFO binding log2 normalized fold changes...
[ 2018-06-18 15:45:27 ] INFO binding all normalized counts for Wt...
[ 2018-06-18 15:45:27 ] INFO binding all normalized counts for C_221_222...
[ 2018-06-18 15:45:28 ] INFO binding filtering flags...
[ 2018-06-18 15:45:29 ] INFO Writing output...
[ 2018-06-18 15:45:29 ] INFO Adding filtered data...
[ 2018-06-18 15:45:29 ] INFO binding annotation...
[ 2018-06-18 15:45:29 ] INFO binding p-values...
[ 2018-06-18 15:45:29 ] INFO binding FDRs...
[ 2018-06-18 15:45:30 ] INFO binding log2 normalized fold changes...
[ 2018-06-18 15:45:30 ] INFO binding all normalized counts for Wt...
[ 2018-06-18 15:45:30 ] INFO binding all normalized counts for C_221_222...
[ 2018-06-18 15:45:30 ] INFO binding filtering flags...
[ 2018-06-18 15:45:31 ] INFO Writing output...
[ 2018-06-18 15:45:33 ] INFO Contrast: Wt_vs_Tg197
[ 2018-06-18 15:45:33 ] INFO Adding non-filtered data...
[ 2018-06-18 15:45:33 ] INFO binding annotation...
[ 2018-06-18 15:45:34 ] INFO binding p-values...
[ 2018-06-18 15:45:34 ] INFO binding FDRs...
[ 2018-06-18 15:45:34 ] INFO binding log2 normalized fold changes...
[ 2018-06-18 15:45:34 ] INFO binding all normalized counts for Wt...
[ 2018-06-18 15:45:34 ] INFO binding all normalized counts for Tg197...
[ 2018-06-18 15:45:35 ] INFO binding filtering flags...
[ 2018-06-18 15:45:36 ] INFO Writing output...
[ 2018-06-18 15:45:36 ] INFO Adding filtered data...
[ 2018-06-18 15:45:36 ] INFO binding annotation...
[ 2018-06-18 15:45:36 ] INFO binding p-values...
[ 2018-06-18 15:45:36 ] INFO binding FDRs...
[ 2018-06-18 15:45:36 ] INFO binding log2 normalized fold changes...
[ 2018-06-18 15:45:36 ] INFO binding all normalized counts for Wt...
[ 2018-06-18 15:45:36 ] INFO binding all normalized counts for Tg197...
[ 2018-06-18 15:45:36 ] INFO binding filtering flags...
[ 2018-06-18 15:45:37 ] INFO Writing output...
[ 2018-06-18 15:45:39 ] INFO Contrast: Tg197_vs_Tg197_C
[ 2018-06-18 15:45:39 ] INFO Adding non-filtered data...
[ 2018-06-18 15:45:39 ] INFO binding annotation...
[ 2018-06-18 15:45:40 ] INFO binding p-values...
[ 2018-06-18 15:45:40 ] INFO binding FDRs...
[ 2018-06-18 15:45:40 ] INFO binding log2 normalized fold changes...
[ 2018-06-18 15:45:40 ] INFO binding all normalized counts for Tg197...
[ 2018-06-18 15:45:41 ] INFO binding all normalized counts for Tg197_C...
[ 2018-06-18 15:45:41 ] INFO binding filtering flags...
[ 2018-06-18 15:45:42 ] INFO Writing output...
[ 2018-06-18 15:45:42 ] INFO Adding filtered data...
[ 2018-06-18 15:45:42 ] INFO binding annotation...
[ 2018-06-18 15:45:42 ] INFO binding p-values...
[ 2018-06-18 15:45:42 ] INFO binding FDRs...
[ 2018-06-18 15:45:43 ] INFO binding log2 normalized fold changes...
[ 2018-06-18 15:45:43 ] INFO binding all normalized counts for Tg197...
[ 2018-06-18 15:45:43 ] INFO binding all normalized counts for Tg197_C...
[ 2018-06-18 15:45:43 ] INFO binding filtering flags...
[ 2018-06-18 15:45:44 ] INFO Writing output...
[ 2018-06-18 15:45:46 ] INFO Contrast: C_221_222_vs_Tg197_C
[ 2018-06-18 15:45:46 ] INFO Adding non-filtered data...
[ 2018-06-18 15:45:46 ] INFO binding annotation...
[ 2018-06-18 15:45:47 ] INFO binding p-values...
[ 2018-06-18 15:45:47 ] INFO binding FDRs...
[ 2018-06-18 15:45:47 ] INFO binding log2 normalized fold changes...
[ 2018-06-18 15:45:47 ] INFO binding all normalized counts for C_221_222...
[ 2018-06-18 15:45:48 ] INFO binding all normalized counts for Tg197_C...
[ 2018-06-18 15:45:48 ] INFO binding filtering flags...
[ 2018-06-18 15:45:49 ] INFO Writing output...
[ 2018-06-18 15:45:49 ] INFO Adding filtered data...
[ 2018-06-18 15:45:49 ] INFO binding annotation...
[ 2018-06-18 15:45:49 ] INFO binding p-values...
[ 2018-06-18 15:45:49 ] INFO binding FDRs...
[ 2018-06-18 15:45:49 ] INFO binding log2 normalized fold changes...
[ 2018-06-18 15:45:49 ] INFO binding all normalized counts for C_221_222...
[ 2018-06-18 15:45:49 ] INFO binding all normalized counts for Tg197_C...
[ 2018-06-18 15:45:49 ] INFO binding filtering flags...
[ 2018-06-18 15:45:50 ] INFO Writing output...
[ 2018-06-18 15:45:52 ] INFO Creating quality control graphs...
[ 2018-06-18 15:45:52 ] INFO Plotting in png format...
[ 2018-06-18 15:45:52 ] INFO Plotting mds...
[ 2018-06-18 15:45:53 ] INFO Plotting biodetection...
[ 2018-06-18 15:45:55 ] INFO Plotting countsbio...
[ 2018-06-18 15:45:58 ] INFO Plotting saturation...
[ 2018-06-18 15:46:06 ] INFO Plotting readnoise...
[ 2018-06-18 15:46:08 ] INFO Plotting correl...
[ 2018-06-18 15:46:09 ] INFO Plotting pairwise...
[ 2018-06-18 15:46:51 ] INFO Plotting boxplot...
[ 2018-06-18 15:46:51 ] INFO Plotting gcbias...
[ 2018-06-18 15:46:52 ] INFO Plotting lengthbias...
[ 2018-06-18 15:46:53 ] INFO Plotting boxplot...
[ 2018-06-18 15:46:53 ] INFO Plotting gcbias...
[ 2018-06-18 15:46:55 ] INFO Plotting lengthbias...
[ 2018-06-18 15:46:55 ] INFO Plotting biodist...
[ 2018-06-18 15:46:55 ] INFO Contrast: Wt_vs_C_221_222
[ 2018-06-18 15:46:56 ] INFO Contrast: Wt_vs_Tg197
[ 2018-06-18 15:46:57 ] INFO Contrast: Tg197_vs_Tg197_C
[ 2018-06-18 15:46:57 ] INFO Contrast: C_221_222_vs_Tg197_C
[ 2018-06-18 15:46:57 ] INFO Plotting volcano...
[ 2018-06-18 15:46:57 ] INFO Contrast: Wt_vs_C_221_222
[ 2018-06-18 15:46:58 ] INFO Contrast: Wt_vs_Tg197
[ 2018-06-18 15:46:58 ] INFO Contrast: Tg197_vs_Tg197_C
[ 2018-06-18 15:46:59 ] INFO Contrast: C_221_222_vs_Tg197_C
[ 2018-06-18 15:46:59 ] INFO Plotting deheatmap...
[ 2018-06-18 15:46:59 ] INFO Contrast: Wt_vs_C_221_222
[ 2018-06-18 15:47:34 ] INFO Contrast: Wt_vs_Tg197
[ 2018-06-18 15:48:06 ] INFO Contrast: Tg197_vs_Tg197_C
[ 2018-06-18 15:48:39 ] INFO Contrast: C_221_222_vs_Tg197_C
[ 2018-06-18 15:49:11 ] INFO Plotting filtered...
[ 2018-06-18 15:49:12 ] INFO Plotting in pdf format...
[ 2018-06-18 15:49:12 ] INFO Plotting mds...
[ 2018-06-18 15:49:12 ] INFO Plotting biodetection...
[ 2018-06-18 15:49:13 ] INFO Plotting countsbio...
[ 2018-06-18 15:49:14 ] INFO Plotting saturation...
[ 2018-06-18 15:49:21 ] INFO Plotting readnoise...
[ 2018-06-18 15:49:22 ] INFO Plotting correl...
[ 2018-06-18 15:49:23 ] INFO Plotting pairwise...
[ 2018-06-18 15:49:43 ] INFO Plotting boxplot...
[ 2018-06-18 15:49:43 ] INFO Plotting gcbias...
[ 2018-06-18 15:49:45 ] INFO Plotting lengthbias...
[ 2018-06-18 15:49:46 ] INFO Plotting boxplot...
[ 2018-06-18 15:49:46 ] INFO Plotting gcbias...
[ 2018-06-18 15:49:47 ] INFO Plotting lengthbias...
[ 2018-06-18 15:49:48 ] INFO Plotting biodist...
[ 2018-06-18 15:49:48 ] INFO Contrast: Wt_vs_C_221_222
[ 2018-06-18 15:49:49 ] INFO Contrast: Wt_vs_Tg197
[ 2018-06-18 15:49:49 ] INFO Contrast: Tg197_vs_Tg197_C
[ 2018-06-18 15:49:49 ] INFO Contrast: C_221_222_vs_Tg197_C
[ 2018-06-18 15:49:49 ] INFO Plotting volcano...
[ 2018-06-18 15:49:49 ] INFO Contrast: Wt_vs_C_221_222
[ 2018-06-18 15:49:50 ] INFO Contrast: Wt_vs_Tg197
[ 2018-06-18 15:49:50 ] INFO Contrast: Tg197_vs_Tg197_C
[ 2018-06-18 15:49:50 ] INFO Contrast: C_221_222_vs_Tg197_C
[ 2018-06-18 15:49:51 ] INFO Plotting deheatmap...
[ 2018-06-18 15:49:51 ] INFO Contrast: Wt_vs_C_221_222
[ 2018-06-18 15:50:23 ] INFO Contrast: Wt_vs_Tg197
[ 2018-06-18 15:50:55 ] INFO Contrast: Tg197_vs_Tg197_C
[ 2018-06-18 15:51:28 ] INFO Contrast: C_221_222_vs_Tg197_C
[ 2018-06-18 15:52:00 ] INFO Plotting filtered...
[ 2018-06-18 15:52:00 ] INFO Creating HTML report...
[ 2018-06-18 15:52:00 ] INFO Compressing figures...

Figures

Multidimensional scaling

The Multi-Dimensional Scaling (MDS) plots comprise a means of visualizing the level of similarity of individual cases of a dataset. It is similar to Principal Component Analysis (PCA), but instead of using the covariance matrix to find similarities among cases, MDS uses absolute distance metrics such as the classical Euclidean distance. Because of the relative linear relations among sequencing samples, it provides a more realistic clustering among samples. MDS serves quality control and it can be interpreted as follows: when the distance among samples of the same biological condition in the MDS space is small, this is an indication of high correlation and reproducibility among them. When this distance is larger or heterogeneous (e.g. the 3rd sample of a triplicate set is further from the other 2), this constitutes an indication of low correlation and reproducibility among samples. It can help exclude poor samples from further analysis.

Biotype detection

The biotype detection bar diagrams are a set of quality control charts that show the percentage of each biotype in the genome (i.e. in the whole set of features provided, for example, protein coding genes, non coding RNAs or pseudogenes) in grey bars, which proportion has been detected in a sample before normalization and after a basic filtering by removing features with zero counts in red lined bars, and the percentage of each biotype within the sample in solid red bars. The difference between grey bars and solid red bars is that the grey bars show the percentage of a feature in the genome while the solid red bars show the percentage in the sample. Thus, the solid red bars may be sometimes higher than the grey bars because certain features (e.g. protein coding genes) may be detected within a sample with a higher proportion relatively to their presence in the genome, as compared with other features. For example, while the percentage of protein coding genes in the whole genome is already higher than other biotypes, this percentage is expected to be even higher in an RNA-Seq experiment where one expects protein-coding genes to exhibit greater abundance. The vertical green line separates the most abundant biotypes (on the left-hand side, corresponding to the left axis scale) from the rest (on the right-hand side, corresponding to the right axis scale). Otherwise, the lower abundance biotypes would be indistinguishable. Unexpected outcomes in this quality control chart (e.g. very low detection of protein coding genes) would signify possible low quality of a sample.

Biotype detection counts

The biotype detection counts boxplots are a set of quality control charts that depict both the biological classification for the detected features and the actual distribution of the read counts for each biological type. The boxplot comprises a means of summarizing the read counts distribution of a sample in the form of a bar with extending lines, as commonly used way of graphically presenting groups of numerical data. A boxplot also indicates which observations, if any, might be considered outliers and is able to visually show different types of populations, without making any assumptions of the underlying statistical distribution. The spacing between the different parts of the box help indicate variance, skewness and identify outliers. The thick bar inside the colored box is the median of the observations while the box extends over the Interquartile Range of the observations. The whiskers extend up (down) to +/-1.5xIQR. Unexpected outcomes (e.g. protein coding read count distribution similar to pseudogene read count distribution) indicates poor sample quality.

Read and biotype saturation

The read and biotype saturation plots are a set of quality control charts that depict the read count saturation levels at several sequencing depths. Thus, they comprise a means of assessing whether the sequencing depth of an RNA-Seq experiment is sufficient in order to detect the biological features under investigation. These quality control charts are separated in two subgroups: the first subgroup (read saturation per biotype for all samples) is a set of plots, one for each biological feature (e.g. protein coding, pseudogene, lincRNA, etc.), that depict the number of detected features in different sequencing depths and for all samples in the same plot. The second subgroup (read saturation per sample for all biotypes) is a set of plots similar to the above, but with, there is one pair of plots with two panels for each sample, presenting all biological features. The left panel depicts the saturation levels for the less abundatnt features, while the right panel, the saturation for the more abundant features, as placing them all together would make the less abundant features indistinguishable. All the saturation plots should be interpreted as follows: if the read counts for a biotype tend to be saturated, the respective curve should tend to reach a plateau at higher depths. Otherwise, more sequencing is needed for the specific biotype.

Read saturation per biotype for all samples

Read saturation per sample for all biotypes

RNA-Seq reads noise

The read noise plots depict the percentage of biological features detected when subsampling the total number of reads. Very steep curves in read noise plots indicate that although the sequencing depth reaches its maximum, a relatively small percentage of total features is detected, indicating that the level of background noise is relatively high. Less steep RNA composition curves, indicate less noise. When a sample's curve deviate from the rest, it could indicate lower or higher quality, depending on the curves of the rest of the samples.

Correlation plots

The sample correlation plots depict the accordance among the RNA-Seq samples, as this is manifested through the read counts table used with the metaseqr pipeline, with two representations that both use the correlation matrix (a matrix which depicts all the pairwise correlations between each pair of samples) of the read counts matrix. The first is a correlation clustered heatmap which depicts the correlations among samples as color-scaled image and the hierarchical clustering tree depicts the grouping of the samples according to their correlation. Samples from the same group that are not clustered together provides an indication that there might be a quality problem with the dataset. The second is a 'correlogram' plot, where again the samples are hierarchically clustered and grouped but this time correlations are presented as ellipses inside each cell. Each cell represents a pairwise comparison and each correlation coefficient is represented by an ellipse whose 'diameter', direction and color depict the accordance for that pair of samples. Highly correlated samples are depicted as ellipses with narrow diameter, while poorly correlated samples are depicted as ellipses with wide diameters. Also, highly correlated samples are depicted as ellipses with a left-to-right upwards direction while poorly correlated samples are depicted as ellipses with a right-to-left upwards direction.

Correlation heatmap

Data correlogram

Pairwise scatterplots

The pairwise comparison plots are split in three parts: the upper diagonal consists of simple scatterplots for all pairwise sample comparisons, together with their Pearson correlation coefficient. It is a simple measure of between sample correlation using all the available data points instead of only the correlation matrix. The lower diagonal consists of mean-difference plots for all pairwise sample comparisons. A mean-difference plot (or a Bland-Altman plots) is a method of data plotting used in analyzing the agreement between two different assays/variables. In this graphical method the differences (or alternatively the ratios) between the two variables are plotted against the averages of the two. Such a plot is useful, for example, for analyzing data with strong correlation between x and y axes, when the (x,y) dots on the plot are close to the diagonal x=y. In this case, the value of the transformed variable X is about the same as x and y and the variable Y shows the difference between x and y. In both represantations, irregular shapes of the red smoother lines are an indication of poor correlation between samples or of other systematic bias sources, which is usually corrected through data normalization.

Boxplots

The boxplot comprises a means of summarizing the read counts distribution of a sample in the form of a bar with extending lines, as a commonly used way of graphically presenting groups of numerical data. A boxplot also indicates which observations, if any, might be considered outliers and is able to visually show different types of populations, without making any assumptions about the underlying statistical distribution. The spacings between the different parts of the box help indicate variance, skewness and identify outliers. The thick bar inside the colored box is the median of the observations while the box extends over the Interquartile Range of the observations. The whiskers extend up (down) to +/-1.5xIQR. Boxplots at similar levels indicate good quality of the normalization. If boxplots remain at different levels after normalization, maybe another normalization algorithm may have to be examined. The un-normalized boxplots show the need for data normalization in order for the data from different samples to follow the same underlying distribution and statistical testing becoming possible.

Boxplot of un-normalized data

Boxplot of normalized data

GC content bias

The GC-content bias plot is a quality control chart that shows the possible dependence of the read counts (in log2 scale) under a gene to the GC content percentage of that gene. In order for the statistical tests to be able to detect statistical significance which occurs due to real biological effects and not by other systematic biases present in the data (e.g. a possible GC-content bias), the latter should be accounted for by the applied normalization algorithm. Although the tests are performed for each gene across biological conditions one could assume that the GC content does not represent a bias, as it is the same for the tested gene across samples and conditions. However, Risso et al. (2011) showed that the GC-content could have an impact in the statistical testing procedure. The GC-content bias plot depicts the dependence of the read counts to the GC content before and after normalization. The smoothing lines for each sample, should be as 'straight' as possible after normalization. In addition, if the smoothing lines differ significantly between biological conditions, this would constitute a possible quality warning.

GC content bias un-normalized

GC content bias normalized

Gene/transcript length bias

The gene/transcript length bias plot is a quality control chart that shows the possible dependence of the read counts (in log2 scale) under a gene to the length that gene (whole gene or sum of exons depending on the analysis). In order for the statistical tests to be able to detect statistical significance which occurs due to real biological effects and not by other systematic biases present in the data (e.g. a possible length bias), the latter should be accounted for by the applied normalization algorithm. Although the tests are performed for each gene across bioogical conditions, one could assume that the gene length does not represent a bias as it's the same for the tested gene across samples and conditions. However, it has been shown in several studies that the gene length could have an impact on the statistical testing procedure. The length bias plot depicts the dependence of the read counts to the gene/transcript length before and after normalization. The smoothing lines for each sample, should be as 'straight' as possible after normalization. In addition, if the smoothing lines differ significantly among biological conditions, this would constitute a possible quality warning.

Gene/transcript length bias un-normalized

Gene/transcript length bias normalized

Chromosome and biotype distribution of filtered genes

The chromosome and biotype distribution of filtered genes is a quality control chart with two rows and four panels: on the left panel of the first row, the bar chart depicts the numbers of filtered genes per chromosome (actual numbers shown above the bars). On the right panel of the first row, the bar chart depicts the numbers of filtered genes per biotype (actual numbers shown above the bars). On the left panel of the second row, the bar chart depicts the fraction of the filtered genes to the total genes per chromosome (actual percentages shown above the bars). On the right panel of the second row, the bar chart depicts the fraction of the filtered genes to the total genes per biotype (actual percentages shown above the bars). This plot should indicate possible quality problems when for example the filtered genes for a specific chromosome (or the fraction) is extremely higher than the rest. Generally, the fractions per chromosome should be uniform and the fractions per biotype should be proportional to the biotype fraction relative to the genome.

Volcano plots

A volcano plot is a scatterplot that is often used when analyzing high-throughput -omics data (e.g. microarray data, RNA-Seq data) to give an overview of interesting genes. The log2 fold change is plotted on the x-axis and the negative log10 p-value is plotted on the y-axis. A volcano plot combines the results of a statistical test (aka, p-values) with the magnitude of the change enabling quick visual identification of those genes that display large-magnitude changes that are also statistically significant. The horizontal dashed line sets the threshold for statistical significance, while the vertical dashed lines set the thresholds for biological significance. It should be noted that the volcano plots become harder to interpret when using more than one statistical algorithm and performing meta-analysis. This happens because the genes that have stronger evidence of being differentially expressed obtain lower p-values while the rest either remain at similar levels or obtain higher p-values. The result is a 'warped' volcano plot, with two main data clouds: one in the upper part of the plot, and one in the lower part of the plot. You can always zoom in when using interacting mode (the default).

Volcano plot for the contrast Wt_vs_C_221_222

Volcano plot for the contrast Wt_vs_Tg197

Volcano plot for the contrast Tg197_vs_Tg197_C

Volcano plot for the contrast C_221_222_vs_Tg197_C

DEG heatmaps

The Differentially Expressed Genes (DEGs) heatmaps depict how well samples from different conditions cluster together according to their expression values after normalization and statistical testing, for each requested statistical contrast. If samples from the same biological condition do not cluster together, this would constitute a warning sign regarding the quality of the samples. In addition, DEG heatmaps provide an initial view of possible clusters of co-expressed genes.

DEG heatmap for the contrast Wt_vs_C_221_222

DEG heatmap for the contrast Wt_vs_Tg197

DEG heatmap for the contrast Tg197_vs_Tg197_C

DEG heatmap for the contrast C_221_222_vs_Tg197_C

Chromosome and biotype distributions of DEGs

The chromosome and biotype distributions bar diagram for Differentially Expressed Genes (DEGs) is split in two panels: i) on the left panel DEGs are distributed per chromosome and the percentage of each chromosome in the genome is presented in grey bars, the percentage of DEGs in each chromosome is presented in red lined bars and the percentage of certain chromosomes in the distribution of DEGs is presented in solid red bars. ii) on the right panel, DEGs are distributed per biotype and the percentage of each biotype in the genome (i.e. in the whole set of features provided, for example, protein coding genes, non coding RNAs or pseudogenes) is presented in grey bars, the percentage of DEGs in each biotype is presented in blue lined bars and the percentage of each biotype in DEGs is presented in solid blue lines. The vertical green line separates the most abundant biotypes (on the left-hand side, corresponding to the left axis scale), from the rest (on the right-hand side, corresponding to the right axis scale). Otherwise, the lower abundance, biotypes would be indistinguishable.

Biotype distribution in DEG for the contrast Wt_vs_C_221_222

Biotype distribution in DEG for the contrast Wt_vs_Tg197

Biotype distribution in DEG for the contrast Tg197_vs_Tg197_C

Biotype distribution in DEG for the contrast C_221_222_vs_Tg197_C

Get all the figures in png, pdf format.

Results

DEG table for the contrast Wt_vs_C_221_222

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Wt_vs_C_221_222. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_Wt_vs_C_221_222	log2_normalized_counts_GK3R188-Wt1	log2_normalized_counts_GK3R189-Wt2	rpgm_normalized_counts_GK3R188-Wt1	rpgm_normalized_counts_GK3R189-Wt2	log2_normalized_counts_GK3R190-C1	log2_normalized_counts_GK3R191-C2	log2_normalized_counts_GK3R192-C3	rpgm_normalized_counts_GK3R190-C1	rpgm_normalized_counts_GK3R191-C2	rpgm_normalized_counts_GK3R192-C3
chr2	164940780	164955850	ENSMUSG00000017737	0.5213	+	Mmp9	protein_coding	1.25e-23	1.87e-19	-5.100320	8.82e+00	6.19e+00	9.62e-02	1.53e-02	3.00e+00	3.58e+00	1.58e+00	1.49e-03	2.34e-03	4.26e-04
chr4	130913125	130936141	ENSMUSG00000028581	0.5309	+	Laptm5	protein_coding	1.93e-13	1.44e-09	-3.977280	7.15e+00	6.48e+00	1.36e-02	8.49e-03	2.32e+00	3.46e+00	2.58e+00	3.86e-04	9.64e-04	4.82e-04
chr10	117277331	117282321	ENSMUSG00000069516	0.4708	-	Lyz2	protein_coding	1.34e-12	6.67e-09	-3.136896	7.93e+00	7.85e+00	1.19e-01	1.13e-01	4.00e+00	3.46e+00	5.75e+00	7.35e-03	4.90e-03	2.60e-02
chr8	39581685	39642673	ENSMUSG00000025044	0.3639	-	Msr1	protein_coding	1.73e-10	6.44e-07	-5.145677	6.48e+00	4.86e+00	9.98e-03	3.17e-03	1.00e+00	1.00e+00	0.00e+00	1.13e-04	1.13e-04	0.00e+00
chr15	77583819	77596125	ENSMUSG00000050014	0.4661	-	Apol10b	protein_coding	6.73e-10	2.01e-06	-3.629357	5.52e+00	5.73e+00	1.87e-02	2.16e-02	1.00e+00	2.00e+00	2.58e+00	4.16e-04	1.25e-03	2.08e-03
chr2	91082390	91115756	ENSMUSG00000002111	0.4989	+	Spi1	protein_coding	1.45e-09	3.60e-06	-4.491853	6.64e+00	5.13e+00	1.84e-02	6.34e-03	1.00e+00	1.00e+00	2.32e+00	1.86e-04	1.86e-04	7.45e-04
chr9	22126727	22135711	ENSMUSG00000001348	0.5233	-	Acp5	protein_coding	1.68e-08	3.59e-05	-3.250095	7.29e+00	6.04e+00	5.55e-02	2.33e-02	2.81e+00	4.32e+00	3.00e+00	2.15e-03	6.80e-03	2.50e-03
chr2	33216069	33247717	ENSMUSG00000004105	0.5079	+	Angptl2	protein_coding	5.90e-08	1.10e-04	-1.865231	1.06e+01	1.11e+01	2.47e-01	3.52e-01	9.06e+00	8.84e+00	9.22e+00	8.25e-02	7.10e-02	9.28e-02
chr7	30413760	30417585	ENSMUSG00000030579	0.4851	+	Tyrobp	protein_coding	1.23e-07	2.04e-04	-4.467606	5.00e+00	4.75e+00	8.74e-03	7.33e-03	0.00e+00	0.00e+00	1.00e+00	0.00e+00	0.00e+00	2.82e-04
chr10	51480612	51496613	ENSMUSG00000062593	0.4044	+	Lilrb4a	protein_coding	1.89e-06	2.41e-03	-3.738768	5.52e+00	5.43e+00	1.06e-02	9.91e-03	2.32e+00	0.00e+00	2.00e+00	9.43e-04	0.00e+00	7.08e-04
chr10	51490956	51496611	ENSMUSG00000112148	0.4203	+	Lilrb4	protein_coding	1.89e-06	2.41e-03	-3.738768	5.52e+00	5.43e+00	4.48e-03	4.18e-03	2.32e+00	0.00e+00	2.00e+00	3.98e-04	0.00e+00	2.98e-04
chr14	75131101	75230842	ENSMUSG00000021998	0.4291	+	Lcp1	protein_coding	1.93e-06	2.41e-03	-3.206451	5.13e+00	5.49e+00	3.72e-03	4.81e-03	1.58e+00	1.58e+00	2.81e+00	2.19e-04	2.19e-04	6.56e-04
chr6	123262111	123275265	ENSMUSG00000030144	0.3845	+	Clec4d	protein_coding	6.05e-06	6.96e-03	-3.614710	3.91e+00	5.09e+00	3.47e-03	8.17e-03	0.00e+00	2.00e+00	0.00e+00	0.00e+00	7.43e-04	0.00e+00
chr4	134082448	134095082	ENSMUSG00000000682	0.4953	-	Cd52	protein_coding	9.20e-06	9.82e-03	-3.700440	3.58e+00	3.81e+00	2.79e-03	3.30e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr7	19696109	19699188	ENSMUSG00000002985	0.5464	-	Apoe	protein_coding	4.89e-05	4.87e-02	-2.452086	9.17e+00	6.23e+00	1.66e-01	2.13e-02	6.32e+00	6.23e+00	4.58e+00	2.28e-02	2.13e-02	6.62e-03
chr8	109575128	109579172	ENSMUSG00000031722	0.5125	-	Hp	protein_coding	6.28e-05	5.87e-02	-1.440952	7.46e+00	7.54e+00	6.17e-02	6.52e-02	6.54e+00	6.46e+00	4.25e+00	3.24e-02	3.07e-02	6.34e-03
chr10	75923222	75936496	ENSMUSG00000000901	0.5354	-	Mmp11	protein_coding	6.99e-05	6.14e-02	1.918963	5.98e+00	5.81e+00	1.37e-02	1.22e-02	7.71e+00	8.10e+00	7.58e+00	4.63e-02	6.05e-02	4.21e-02
chr6	123106428	123143999	ENSMUSG00000030148	0.3919	+	Clec4a2	protein_coding	8.29e-05	6.57e-02	-3.426265	4.39e+00	4.46e+00	3.81e-03	4.00e-03	1.00e+00	1.58e+00	0.00e+00	1.91e-04	3.81e-04	0.00e+00
chr1	88673125	88702221	ENSMUSG00000049866	0.4750	-	Arl4c	protein_coding	8.35e-05	6.57e-02	-1.369530	9.96e+00	1.02e+01	1.35e-01	1.60e-01	8.75e+00	8.61e+00	8.77e+00	5.85e-02	5.30e-02	5.92e-02
chr3	95526786	95556403	ENSMUSG00000038642	0.4437	+	Ctss	protein_coding	1.20e-04	8.97e-02	-3.562242	5.61e+00	3.81e+00	3.27e-02	8.85e-03	0.00e+00	0.00e+00	2.58e+00	0.00e+00	0.00e+00	3.40e-03
chr1	171229572	171234365	ENSMUSG00000058715	0.4864	-	Fcer1g	protein_coding	1.49e-04	1.06e-01	-2.947533	5.25e+00	5.09e+00	1.30e-02	1.16e-02	0.00e+00	2.58e+00	2.81e+00	0.00e+00	1.75e-03	2.10e-03
chr5	134600022	134615025	ENSMUSG00000040751	0.5223	-	Lat2	protein_coding	2.05e-04	1.39e-01	-2.447459	5.43e+00	5.21e+00	6.02e-03	5.16e-03	3.17e+00	2.81e+00	2.58e+00	1.15e-03	8.60e-04	7.17e-04
chr14	65837302	65866607	ENSMUSG00000022035	0.4480	+	Ccdc25	protein_coding	2.13e-04	1.39e-01	-1.384885	9.98e+00	9.85e+00	2.56e-01	2.33e-01	8.82e+00	8.17e+00	8.54e+00	1.14e-01	7.27e-02	9.42e-02
chr14	50870324	50880603	ENSMUSG00000097431	0.4238	+	Gm26782	antisense	2.30e-04	1.42e-01	1.510518	6.04e+00	4.86e+00	8.53e-03	3.67e-03	6.44e+00	7.02e+00	7.56e+00	1.13e-02	1.69e-02	2.47e-02
chr4	4133531	4138819	ENSMUSG00000045573	0.4386	-	Penk	protein_coding	2.58e-04	1.42e-01	1.883937	8.48e+00	1.04e+01	1.27e-01	4.82e-01	1.12e+01	1.22e+01	1.12e+01	8.58e-01	1.65e+00	8.64e-01
chr6	124530345	124542359	ENSMUSG00000038521	0.4617	-	C1s1	protein_coding	2.61e-04	1.42e-01	-1.215013	7.42e+00	7.77e+00	3.03e-02	3.89e-02	0.00e+00	7.96e+00	1.00e+00	0.00e+00	4.43e-02	1.78e-04
chr16	36934983	36963212	ENSMUSG00000022831	0.4295	+	Hcls1	protein_coding	2.67e-04	1.42e-01	-3.247928	0.00e+00	4.17e+00	0.00e+00	2.20e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr5	66016549	66173118	ENSMUSG00000070780	0.4485	-	Rbm47	protein_coding	2.75e-04	1.42e-01	-2.491853	0.00e+00	3.81e+00	0.00e+00	1.58e-03	1.00e+00	0.00e+00	0.00e+00	1.21e-04	0.00e+00	0.00e+00
chr1	72857932	72874884	ENSMUSG00000026185	0.4955	-	Igfbp5	protein_coding	2.88e-04	1.42e-01	-1.336219	7.34e+00	7.71e+00	2.83e-02	3.67e-02	6.39e+00	6.09e+00	6.11e+00	1.46e-02	1.18e-02	1.19e-02
chr5	134702593	134747323	ENSMUSG00000029675	0.4978	-	Eln	protein_coding	2.89e-04	1.42e-01	1.214579	9.41e+00	8.55e+00	4.07e-02	2.24e-02	9.90e+00	1.04e+01	1.04e+01	5.71e-02	8.04e-02	8.24e-02
chr15	74994877	74998031	ENSMUSG00000075602	0.4887	-	Ly6a	protein_coding	2.94e-04	1.42e-01	-1.169652	1.16e+01	1.22e+01	1.07e+00	1.67e+00	1.10e+01	1.08e+01	1.05e+01	7.09e-01	6.29e-01	4.89e-01
chr11	100368958	100397763	ENSMUSG00000001552	0.5225	-	Jup	protein_coding	3.46e-04	1.61e-01	1.561504	6.04e+00	5.86e+00	8.98e-03	7.88e-03	7.13e+00	7.61e+00	7.73e+00	1.92e-02	2.69e-02	2.93e-02
chr5	31086106	31108237	ENSMUSG00000029151	0.4999	-	Slc30a3	protein_coding	3.83e-04	1.74e-01	-1.522227	4.17e+00	7.34e+00	2.89e-03	2.74e-02	4.32e+00	5.25e+00	5.17e+00	3.23e-03	6.29e-03	5.95e-03
chr10	122985074	122986555	ENSMUSG00000112237	0.6835	-	AC153911.1	transcribed_processed_pseudogene	6.57e-04	2.82e-01	-1.241216	8.63e+00	8.79e+00	1.58e-01	1.77e-01	7.68e+00	6.99e+00	7.65e+00	8.15e-02	5.04e-02	7.99e-02
chr1	133699457	133801041	ENSMUSG00000026463	0.4772	-	Atp2b4	protein_coding	6.94e-04	2.82e-01	-1.213466	7.97e+00	8.25e+00	1.84e-02	2.24e-02	7.23e+00	6.82e+00	6.58e+00	1.10e-02	8.27e-03	7.01e-03
chr9	37227585	37255738	ENSMUSG00000032122	0.4825	-	Slc37a2	protein_coding	6.96e-04	2.82e-01	-3.307429	4.17e+00	3.91e+00	2.68e-03	2.21e-03	0.00e+00	1.58e+00	0.00e+00	0.00e+00	3.15e-04	0.00e+00

Download the DEG result list for Wt_vs_C_221_222.
Download the whole result list for Wt_vs_C_221_222.

DEG table for the contrast Wt_vs_Tg197

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Wt_vs_Tg197. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_Wt_vs_Tg197	log2_normalized_counts_GK3R188-Wt1	log2_normalized_counts_GK3R189-Wt2	rpgm_normalized_counts_GK3R188-Wt1	rpgm_normalized_counts_GK3R189-Wt2	log2_normalized_counts_GK3R193-Tg197-1	log2_normalized_counts_GK3R194-Tg197-2	log2_normalized_counts_GK3R195-Tg197-3	rpgm_normalized_counts_GK3R193-Tg197-1	rpgm_normalized_counts_GK3R194-Tg197-2	rpgm_normalized_counts_GK3R195-Tg197-3
chr7	46711998	46715700	ENSMUSG00000040026	0.4807	-	Saa3	protein_coding	2.08e-42	3.10e-38	8.148134	3.91e+00	2.58e+00	3.05e-03	1.09e-03	1.13e+01	1.13e+01	1.20e+01	5.32e-01	5.43e-01	8.73e-01
chr1	83116766	83119167	ENSMUSG00000026166	0.3926	+	Ccl20	protein_coding	6.59e-33	4.92e-29	6.149391	5.78e+00	4.39e+00	2.35e-02	8.69e-03	1.09e+01	1.14e+01	1.18e+01	8.59e-01	1.15e+00	1.50e+00
chr19	34473786	34475135	ENSMUSG00000050370	0.4985	-	Ch25h	protein_coding	1.01e-24	5.04e-21	5.677356	2.81e+00	5.13e+00	4.16e-03	2.36e-02	9.56e+00	9.87e+00	1.06e+01	5.23e-01	6.48e-01	1.06e+00
chr9	7445822	7455975	ENSMUSG00000043613	0.4079	+	Mmp3	protein_coding	4.00e-18	1.49e-14	3.896164	7.48e+00	6.69e+00	1.16e-01	6.64e-02	1.10e+01	1.13e+01	1.08e+01	1.30e+00	1.65e+00	1.15e+00
chr17	57203970	57228136	ENSMUSG00000024164	0.5201	-	C3	protein_coding	5.92e-18	1.77e-14	3.769654	6.48e+00	4.95e+00	2.32e-02	7.90e-03	9.22e+00	9.89e+00	9.83e+00	1.57e-01	2.49e-01	2.40e-01
chr6	30723547	30748465	ENSMUSG00000051855	0.4545	+	Mest	protein_coding	1.50e-15	3.75e-12	-3.222392	9.63e+00	9.11e+00	8.98e-02	6.24e-02	5.70e+00	5.64e+00	6.83e+00	5.78e-03	5.56e-03	1.28e-02
chr18	35713086	35722356	ENSMUSG00000073599	0.4990	-	Ecscr	protein_coding	9.07e-15	1.94e-11	3.653675	5.52e+00	5.17e+00	8.33e-03	6.48e-03	8.99e+00	9.27e+00	8.73e+00	9.37e-02	1.14e-01	7.83e-02
chr9	45370185	45396159	ENSMUSG00000066705	0.4943	+	Fxyd6	protein_coding	1.38e-14	2.57e-11	-3.942515	7.34e+00	6.97e+00	3.43e-02	2.64e-02	3.70e+00	3.00e+00	2.81e+00	2.55e-03	1.49e-03	1.28e-03
chr12	104247905	104253669	ENSMUSG00000041449	0.4772	+	Serpina3h	transcribed_unprocessed_pseudogene	7.52e-14	1.25e-10	3.253871	5.86e+00	3.32e+00	2.28e-02	3.60e-03	8.08e+00	8.17e+00	8.69e+00	1.08e-01	1.15e-01	1.65e-01
chr8	109575128	109579172	ENSMUSG00000031722	0.5125	-	Hp	protein_coding	9.58e-14	1.43e-10	3.354243	7.46e+00	7.54e+00	6.17e-02	6.52e-02	1.03e+01	1.08e+01	1.13e+01	4.31e-01	6.39e-01	8.86e-01
chr7	19696109	19699188	ENSMUSG00000002985	0.5464	-	Apoe	protein_coding	1.21e-13	1.64e-10	-4.181014	9.17e+00	6.23e+00	1.66e-01	2.13e-02	4.91e+00	3.17e+00	3.91e+00	8.35e-03	2.30e-03	4.03e-03
chr12	112106679	112127559	ENSMUSG00000037686	0.5676	+	Aspg	protein_coding	4.44e-13	5.52e-10	-3.240314	7.10e+00	7.48e+00	1.02e-02	1.33e-02	3.91e+00	2.32e+00	4.91e+00	1.05e-03	3.01e-04	2.18e-03
chr2	31470207	31520672	ENSMUSG00000076441	0.5281	+	Ass1	protein_coding	7.09e-13	8.15e-10	3.797737	4.70e+00	4.09e+00	6.24e-03	3.99e-03	8.26e+00	8.35e+00	8.04e+00	7.61e-02	8.13e-02	6.56e-02
chr1	79434669	79440120	ENSMUSG00000050711	0.3955	-	Scg2	protein_coding	1.05e-12	1.12e-09	-3.575917	6.17e+00	6.44e+00	4.10e-02	4.96e-02	3.17e+00	3.00e+00	1.58e+00	4.62e-03	4.04e-03	1.15e-03
chr11	82035571	82037453	ENSMUSG00000035385	0.4376	+	Ccl2	protein_coding	1.37e-12	1.37e-09	3.756916	1.00e+01	1.01e+01	6.80e-01	7.33e-01	1.36e+01	1.40e+01	1.39e+01	8.07e+00	1.06e+01	9.98e+00
chr10	68723646	68782650	ENSMUSG00000060044	0.4056	+	Tmem26	protein_coding	1.58e-12	1.47e-09	-2.682206	8.10e+00	8.47e+00	2.44e-02	3.14e-02	5.49e+00	5.64e+00	5.70e+00	3.92e-03	4.36e-03	4.54e-03
chr2	128862981	128897034	ENSMUSG00000027386	0.4755	+	Fbln7	protein_coding	3.32e-11	2.92e-08	-2.849462	7.48e+00	7.75e+00	6.60e-02	7.94e-02	4.75e+00	3.32e+00	5.49e+00	9.64e-03	3.34e-03	1.63e-02
chr5	31086106	31108237	ENSMUSG00000029151	0.4999	-	Slc30a3	protein_coding	5.32e-11	4.42e-08	-3.491853	4.17e+00	7.34e+00	2.89e-03	2.74e-02	3.32e+00	3.46e+00	1.58e+00	1.53e-03	1.70e-03	3.40e-04
chr10	62071123	62072362	ENSMUSG00000046687	0.5395	+	Gm5424	processed_pseudogene	5.78e-11	4.55e-08	2.987751	5.78e+00	3.81e+00	4.32e-02	1.04e-02	8.13e+00	8.27e+00	7.86e+00	2.23e-01	2.46e-01	1.85e-01
chr15	54838901	54952892	ENSMUSG00000022425	0.4130	-	Enpp2	protein_coding	1.18e-10	8.78e-08	2.734372	6.69e+00	6.00e+00	1.28e-02	7.90e-03	8.94e+00	8.94e+00	9.42e+00	6.15e-02	6.13e-02	8.59e-02
chr8	70373558	70382066	ENSMUSG00000031849	0.5643	+	Comp	protein_coding	1.27e-10	9.04e-08	-3.337494	1.41e+01	1.17e+01	2.78e+00	5.33e-01	1.02e+01	9.65e+00	1.00e+01	1.96e-01	1.30e-01	1.66e-01
chr5	134702593	134747323	ENSMUSG00000029675	0.4978	-	Eln	protein_coding	2.08e-10	1.41e-07	-2.660543	9.41e+00	8.55e+00	4.07e-02	2.24e-02	7.01e+00	5.67e+00	6.15e+00	7.65e-03	2.99e-03	4.18e-03
chr17	34856412	34882042	ENSMUSG00000092511	0.4845	-	Gm20547	protein_coding	3.29e-10	2.14e-07	2.512472	8.17e+00	7.40e+00	2.27e-01	1.33e-01	9.67e+00	1.04e+01	1.08e+01	6.45e-01	1.07e+00	1.38e+00
chr12	55489410	55492647	ENSMUSG00000021025	0.5435	-	Nfkbia	protein_coding	4.34e-10	2.70e-07	2.652498	8.87e+00	8.50e+00	1.55e-01	1.20e-01	1.14e+01	1.14e+01	1.13e+01	9.08e-01	8.78e-01	8.10e-01
chr18	60911780	60918561	ENSMUSG00000036412	0.5268	+	Arsi	protein_coding	7.41e-10	4.43e-07	-2.587965	7.99e+00	7.82e+00	1.24e-01	1.10e-01	5.83e+00	4.32e+00	5.43e+00	2.74e-02	9.30e-03	2.05e-02
chr5	90786103	90789600	ENSMUSG00000029379	0.4294	+	Cxcl3	protein_coding	7.99e-10	4.59e-07	2.714305	5.70e+00	4.64e+00	1.62e-02	7.63e-03	8.34e+00	8.04e+00	7.40e+00	1.03e-01	8.36e-02	5.34e-02
chr17	34856374	34862518	ENSMUSG00000090231	0.5196	-	Cfb	protein_coding	8.51e-10	4.71e-07	2.479287	9.69e+00	8.93e+00	1.20e-01	7.10e-02	1.12e+01	1.18e+01	1.23e+01	3.33e-01	5.29e-01	7.39e-01
chr9	102988712	103096002	ENSMUSG00000032548	0.4822	+	Slco2a1	protein_coding	1.07e-09	5.73e-07	3.297201	4.17e+00	5.04e+00	1.19e-03	2.23e-03	7.85e+00	8.04e+00	8.01e+00	1.60e-02	1.84e-02	1.79e-02
chr2	66673425	66784914	ENSMUSG00000034810	0.3734	-	Scn7a	protein_coding	1.51e-09	7.56e-07	-3.033108	6.04e+00	6.97e+00	1.96e-02	3.73e-02	3.00e+00	3.91e+00	3.58e+00	2.11e-03	4.21e-03	3.31e-03
chr19	6418731	6544169	ENSMUSG00000033768	0.5368	+	Nrxn2	protein_coding	1.52e-09	7.56e-07	-3.754888	7.57e+00	6.15e+00	1.61e-02	5.97e-03	3.46e+00	1.00e+00	4.00e+00	8.53e-04	8.53e-05	1.28e-03
chr17	45555716	45563169	ENSMUSG00000023947	0.5346	+	Nfkbie	protein_coding	2.84e-09	1.37e-06	3.415037	4.39e+00	2.32e+00	8.50e-03	1.70e-03	6.66e+00	7.16e+00	7.43e+00	4.25e-02	6.03e-02	7.27e-02
chr1	120190757	120272705	ENSMUSG00000026389	0.4820	-	Steap3	protein_coding	6.88e-09	3.21e-06	-2.677294	7.77e+00	7.25e+00	3.78e-02	2.62e-02	5.00e+00	4.58e+00	4.95e+00	5.38e-03	3.99e-03	5.21e-03
chr11	70453983	70459984	ENSMUSG00000018920	0.4742	-	Cxcl16	protein_coding	8.31e-09	3.76e-06	2.924449	5.13e+00	3.81e+00	1.27e-02	4.87e-03	7.46e+00	7.71e+00	7.43e+00	6.55e-02	7.78e-02	6.44e-02
chr14	56365068	56388550	ENSMUSG00000022229	0.4575	+	Atp12a	protein_coding	2.21e-08	9.43e-06	-2.685157	7.55e+00	6.97e+00	5.97e-02	3.96e-02	5.00e+00	3.32e+00	4.95e+00	9.90e-03	2.87e-03	9.58e-03
chr7	79053483	79115099	ENSMUSG00000030607	0.4879	+	Acan	protein_coding	2.21e-08	9.43e-06	-3.281570	6.64e+00	6.46e+00	4.77e-02	4.19e-02	3.00e+00	3.46e+00	3.32e+00	3.38e-03	4.82e-03	4.34e-03
chr9	21015985	21028817	ENSMUSG00000037405	0.5061	+	Icam1	protein_coding	2.35e-08	9.75e-06	3.412303	2.81e+00	4.70e+00	1.78e-03	7.41e-03	7.15e+00	7.27e+00	7.85e+00	4.18e-02	4.54e-02	6.82e-02
chr8	40862396	40922308	ENSMUSG00000031596	0.4237	+	Slc7a2	protein_coding	3.04e-08	1.23e-05	2.424217	8.32e+00	8.59e+00	3.85e-02	4.64e-02	1.02e+01	1.13e+01	1.10e+01	1.41e-01	3.04e-01	2.40e-01
chr17	34197721	34201454	ENSMUSG00000024338	0.5319	+	Psmb8	protein_coding	3.65e-08	1.44e-05	2.116997	6.83e+00	5.00e+00	4.20e-02	1.15e-02	7.75e+00	8.16e+00	8.81e+00	7.96e-02	1.06e-01	1.66e-01
chr5	104299171	104311469	ENSMUSG00000029306	0.4065	+	Ibsp	protein_coding	4.89e-08	1.87e-05	-3.177918	6.79e+00	6.13e+00	5.12e-02	3.21e-02	1.58e+00	3.46e+00	4.00e+00	9.32e-04	4.66e-03	6.99e-03
chr11	112782224	112787760	ENSMUSG00000000567	0.5095	+	Sox9	protein_coding	5.47e-08	2.04e-05	-1.996106	1.02e+01	1.02e+01	3.29e-01	3.39e-01	8.55e+00	8.01e+00	7.95e+00	1.07e-01	7.34e-02	7.03e-02
chr9	66713686	66766845	ENSMUSG00000032373	0.4667	+	Car12	protein_coding	8.19e-08	2.98e-05	-3.145677	5.36e+00	6.27e+00	5.31e-03	1.01e-02	3.00e+00	2.32e+00	2.81e+00	9.29e-04	5.31e-04	7.97e-04
chr10	57784881	57788450	ENSMUSG00000019874	0.3838	+	Fabp7	protein_coding	1.03e-07	3.66e-05	3.079289	3.91e+00	5.46e+00	4.66e-03	1.43e-02	7.45e+00	7.35e+00	8.68e+00	5.79e-02	5.39e-02	1.36e-01
chr9	7848699	7873186	ENSMUSG00000032000	0.4481	-	Birc3	protein_coding	1.18e-07	4.11e-05	2.541241	5.36e+00	4.70e+00	3.72e-03	2.32e-03	7.81e+00	7.78e+00	7.13e+00	2.08e-02	2.03e-02	1.29e-02
chr11	83525778	83530518	ENSMUSG00000035042	0.4664	-	Ccl5	protein_coding	1.50e-07	5.09e-05	3.330645	3.91e+00	2.81e+00	5.18e-03	2.22e-03	6.73e+00	6.67e+00	6.95e+00	3.89e-02	3.74e-02	4.55e-02
chr12	54178981	54203860	ENSMUSG00000035105	0.4588	-	Egln3	protein_coding	2.50e-07	8.30e-05	2.936274	4.39e+00	2.58e+00	6.91e-03	1.73e-03	6.94e+00	6.48e+00	6.61e+00	4.22e-02	3.04e-02	3.35e-02
chr11	82115185	82116799	ENSMUSG00000009185	0.4817	+	Ccl8	protein_coding	2.63e-07	8.54e-05	4.349150	2.00e+00	1.58e+00	2.12e-03	1.41e-03	6.00e+00	6.63e+00	5.67e+00	4.45e-02	6.92e-02	3.53e-02
chr17	13007839	13018119	ENSMUSG00000006818	0.4286	+	Sod2	protein_coding	3.61e-07	1.15e-04	2.090476	8.91e+00	8.68e+00	1.15e-01	9.72e-02	1.08e+01	1.10e+01	1.09e+01	4.15e-01	4.95e-01	4.45e-01
chr15	98663421	98677461	ENSMUSG00000054855	0.4841	-	Rnd1	protein_coding	5.99e-07	1.87e-04	2.336182	6.04e+00	6.23e+00	1.13e-02	1.29e-02	8.85e+00	8.25e+00	8.24e+00	7.99e-02	5.29e-02	5.26e-02
chr17	33996017	34000333	ENSMUSG00000061232	0.5383	-	H2-K1	protein_coding	7.57e-07	2.31e-04	2.049074	8.46e+00	8.38e+00	1.09e-01	1.03e-01	1.02e+01	1.07e+01	1.04e+01	3.64e-01	5.32e-01	4.20e-01
chr15	99579055	99584547	ENSMUSG00000023013	0.5520	+	Aqp2	protein_coding	8.87e-07	2.65e-04	-2.612443	4.86e+00	6.27e+00	1.59e-02	4.33e-02	3.46e+00	1.00e+00	3.70e+00	5.69e-03	5.69e-04	6.83e-03
chr17	33915899	33929288	ENSMUSG00000024308	0.5340	+	Tapbp	protein_coding	9.07e-07	2.66e-04	1.998434	7.97e+00	7.72e+00	5.05e-02	4.26e-02	9.54e+00	9.89e+00	1.01e+01	1.51e-01	1.92e-01	2.16e-01
chr12	104236245	104241939	ENSMUSG00000041481	0.4834	+	Serpina3g	protein_coding	9.83e-07	2.82e-04	3.233797	3.58e+00	2.58e+00	2.48e-03	1.13e-03	6.55e+00	5.95e+00	6.61e+00	2.10e-02	1.38e-02	2.19e-02
chr1	78816758	78820028	ENSMUSG00000047330	0.4720	+	Kcne4	protein_coding	1.79e-06	5.05e-04	-2.321928	7.66e+00	6.88e+00	6.42e-02	3.74e-02	5.75e+00	4.25e+00	4.52e+00	1.69e-02	5.75e-03	7.03e-03
chr1	166254139	166316823	ENSMUSG00000040612	0.4493	+	Ildr2	protein_coding	1.92e-06	5.32e-04	-2.690757	4.86e+00	6.13e+00	3.84e-03	9.47e-03	3.46e+00	0.00e+00	3.46e+00	1.37e-03	0.00e+00	1.37e-03
chr2	30889471	30929863	ENSMUSG00000050737	0.4993	-	Ptges	protein_coding	2.03e-06	5.49e-04	2.094435	7.21e+00	7.58e+00	3.37e-02	4.38e-02	9.42e+00	9.34e+00	9.72e+00	1.57e-01	1.49e-01	1.93e-01
chr8	94172664	94173568	ENSMUSG00000031762	0.5569	+	Mt2	protein_coding	2.06e-06	5.49e-04	2.012194	1.11e+01	1.04e+01	1.57e+00	9.84e-01	1.31e+01	1.26e+01	1.28e+01	6.12e+00	4.38e+00	4.95e+00
chr8	119992438	120052793	ENSMUSG00000031825	0.5098	+	Crispld2	protein_coding	2.40e-06	6.29e-04	-1.603028	1.06e+01	1.11e+01	3.11e-01	4.50e-01	9.33e+00	9.01e+00	9.46e+00	1.30e-01	1.04e-01	1.42e-01
chr2	158306493	158332852	ENSMUSG00000016024	0.4777	+	Lbp	protein_coding	3.58e-06	9.22e-04	1.930098	7.27e+00	7.15e+00	1.93e-02	1.78e-02	9.01e+00	8.99e+00	9.38e+00	6.48e-02	6.41e-02	8.41e-02
chr2	152931898	152933208	ENSMUSG00000074676	0.5919	-	Foxs1	protein_coding	4.20e-06	1.06e-03	2.839327	3.91e+00	4.25e+00	1.13e-02	1.45e-02	6.27e+00	7.42e+00	6.87e+00	6.11e-02	1.37e-01	9.33e-02
chr3	116249654	116253503	ENSMUSG00000068696	0.5247	-	Gpr88	protein_coding	5.13e-06	1.28e-03	-2.500265	7.03e+00	6.39e+00	2.91e-02	1.86e-02	4.52e+00	3.70e+00	4.39e+00	4.93e-03	2.69e-03	4.48e-03
chr5	110544355	110621380	ENSMUSG00000033316	0.4906	+	Galnt9	protein_coding	6.51e-06	1.60e-03	-3.362570	4.17e+00	4.91e+00	3.94e-03	6.73e-03	2.00e+00	0.00e+00	1.00e+00	6.96e-04	0.00e+00	2.32e-04
chr2	122636986	122641191	ENSMUSG00000033213	0.4332	+	AA467197	protein_coding	7.38e-06	1.78e-03	2.846883	3.91e+00	3.17e+00	8.17e-03	4.67e-03	5.83e+00	7.46e+00	4.70e+00	3.27e-02	1.02e-01	1.46e-02
chr7	111471661	111779977	ENSMUSG00000038296	0.4605	-	Galnt18	protein_coding	7.87e-06	1.87e-03	2.544321	4.39e+00	5.13e+00	1.31e-02	2.23e-02	7.81e+00	7.36e+00	6.66e+00	1.47e-01	1.07e-01	6.55e-02
chr19	36731737	36736653	ENSMUSG00000067279	0.4364	-	Ppp1r3c	protein_coding	9.00e-06	2.02e-03	-1.930307	9.48e+00	8.65e+00	2.44e-01	1.37e-01	7.33e+00	7.38e+00	6.82e+00	5.46e-02	5.63e-02	3.82e-02
chr1	88055388	88219004	ENSMUSG00000090165	0.4240	+	Ugt1a10	protein_coding	9.31e-06	2.02e-03	1.581171	8.39e+00	7.43e+00	1.06e-01	5.46e-02	8.90e+00	1.01e+01	9.39e+00	1.51e-01	3.58e-01	2.13e-01
chr1	88070800	88218997	ENSMUSG00000090175	0.4246	+	Ugt1a9	protein_coding	9.60e-06	2.02e-03	1.578638	8.39e+00	7.43e+00	1.83e-01	9.43e-02	8.89e+00	1.01e+01	9.39e+00	2.59e-01	6.19e-01	3.68e-01
chr1	88087813	88219004	ENSMUSG00000089675	0.4271	+	Ugt1a8	protein_coding	9.60e-06	2.02e-03	1.578638	8.39e+00	7.43e+00	1.82e-01	9.39e-02	8.89e+00	1.01e+01	9.39e+00	2.58e-01	6.17e-01	3.67e-01
chr1	88103252	88219003	ENSMUSG00000090145	0.4263	+	Ugt1a6b	protein_coding	9.60e-06	2.02e-03	1.578638	8.39e+00	7.43e+00	1.83e-01	9.40e-02	8.89e+00	1.01e+01	9.39e+00	2.58e-01	6.17e-01	3.67e-01
chr1	88166012	88218997	ENSMUSG00000089943	0.4244	+	Ugt1a5	protein_coding	9.60e-06	2.02e-03	1.578638	8.39e+00	7.43e+00	1.83e-01	9.43e-02	8.89e+00	1.01e+01	9.39e+00	2.59e-01	6.19e-01	3.68e-01
chr1	88200601	88218997	ENSMUSG00000090171	0.4415	+	Ugt1a2	protein_coding	9.60e-06	2.02e-03	1.578638	8.39e+00	7.43e+00	1.83e-01	9.43e-02	8.89e+00	1.01e+01	9.39e+00	2.59e-01	6.19e-01	3.68e-01
chr1	88211959	88218997	ENSMUSG00000089960	0.4381	+	Ugt1a1	protein_coding	9.60e-06	2.02e-03	1.578638	8.39e+00	7.43e+00	1.83e-01	9.43e-02	8.89e+00	1.01e+01	9.39e+00	2.59e-01	6.19e-01	3.68e-01
chr5	24413392	24417835	ENSMUSG00000038276	0.5473	+	Asic3	protein_coding	9.75e-06	2.02e-03	-1.704094	8.10e+00	8.31e+00	5.99e-02	6.93e-02	6.19e+00	6.85e+00	6.41e+00	1.57e-02	2.49e-02	1.84e-02
chr1	88134809	88218997	ENSMUSG00000054545	0.4259	+	Ugt1a6a	protein_coding	9.87e-06	2.02e-03	1.579925	8.39e+00	7.45e+00	7.72e-02	4.02e-02	8.91e+00	1.01e+01	9.39e+00	1.11e-01	2.62e-01	1.55e-01
chr2	126320973	126500674	ENSMUSG00000060131	0.4164	-	Atp8b4	protein_coding	1.00e-05	2.02e-03	3.000000	3.17e+00	0.00e+00	6.67e-04	0.00e+00	5.58e+00	4.95e+00	5.36e+00	3.92e-03	2.50e-03	3.33e-03
chr9	104084157	104126933	ENSMUSG00000079355	0.4469	-	Ackr4	protein_coding	1.08e-05	2.14e-03	-2.537134	4.17e+00	6.15e+00	5.58e-03	2.30e-02	2.81e+00	2.58e+00	3.32e+00	1.97e-03	1.64e-03	2.95e-03
chr5	33721674	33737068	ENSMUSG00000054252	0.5663	+	Fgfr3	protein_coding	1.18e-05	2.33e-03	-2.251225	5.61e+00	6.60e+00	5.17e-03	1.03e-02	3.32e+00	4.46e+00	3.81e+00	9.69e-04	2.26e-03	1.40e-03
chr1	88095062	88220002	ENSMUSG00000090124	0.4268	+	Ugt1a7c	protein_coding	1.28e-05	2.49e-03	1.566128	8.39e+00	7.48e+00	7.40e-02	3.94e-02	8.91e+00	1.01e+01	9.39e+00	1.06e-01	2.50e-01	1.49e-01
chr5	105270702	105293698	ENSMUSG00000104713	0.4034	-	Gbp6	protein_coding	1.42e-05	2.73e-03	4.437405	0.00e+00	1.58e+00	0.00e+00	1.64e-04	4.52e+00	5.39e+00	6.02e+00	1.81e-03	3.37e-03	5.26e-03
chr10	88322804	88379080	ENSMUSG00000020057	0.4456	-	Dram1	protein_coding	1.52e-05	2.88e-03	1.946107	7.15e+00	7.70e+00	1.41e-02	2.07e-02	9.32e+00	9.39e+00	9.48e+00	6.38e-02	6.69e-02	7.13e-02
chr10	19000910	19015657	ENSMUSG00000019850	0.4554	-	Tnfaip3	protein_coding	1.58e-05	2.94e-03	3.793549	0.00e+00	3.17e+00	0.00e+00	1.17e-03	6.19e+00	6.36e+00	5.73e+00	1.05e-02	1.19e-02	7.62e-03
chr6	120891930	120916853	ENSMUSG00000004446	0.4971	-	Bid	protein_coding	1.59e-05	2.94e-03	2.117357	5.70e+00	6.04e+00	6.14e-03	7.82e-03	7.97e+00	8.08e+00	7.94e+00	3.01e-02	3.25e-02	2.95e-02
chr3	19957054	20009145	ENSMUSG00000003617	0.3946	+	Cp	protein_coding	1.67e-05	3.04e-03	3.133856	3.17e+00	1.58e+00	3.78e-04	9.45e-05	5.93e+00	5.52e+00	5.67e+00	2.84e-03	2.13e-03	2.36e-03
chr17	72918305	72941942	ENSMUSG00000024063	0.4696	+	Lbh	protein_coding	1.78e-05	3.20e-03	1.691831	8.10e+00	7.73e+00	5.46e-02	4.21e-02	9.90e+00	9.18e+00	9.68e+00	1.90e-01	1.16e-01	1.64e-01
chr2	164389393	164405160	ENSMUSG00000016995	0.5153	-	Matn4	protein_coding	1.98e-05	3.51e-03	-2.906891	5.36e+00	4.86e+00	1.45e-02	1.01e-02	2.00e+00	1.00e+00	3.00e+00	1.08e-03	3.62e-04	2.53e-03
chr11	82045712	82047525	ENSMUSG00000035373	0.4311	+	Ccl7	protein_coding	2.29e-05	4.01e-03	1.895299	1.02e+01	1.04e+01	7.14e-01	7.90e-01	1.22e+01	1.21e+01	1.23e+01	2.87e+00	2.52e+00	3.01e+00
chr15	75044018	75048830	ENSMUSG00000079018	0.4820	-	Ly6c1	protein_coding	2.31e-05	4.01e-03	-1.317952	8.58e+00	9.46e+00	1.06e-01	1.96e-01	8.55e+00	6.82e+00	7.38e+00	1.04e-01	3.12e-02	4.62e-02
chr3	142620602	142638008	ENSMUSG00000028270	0.4092	+	Gbp2	protein_coding	2.84e-05	4.87e-03	2.666956	3.58e+00	4.70e+00	2.07e-03	4.70e-03	6.86e+00	6.79e+00	7.08e+00	2.16e-02	2.07e-02	2.52e-02
chr9	75775364	75900310	ENSMUSG00000032179	0.3803	+	Bmp5	protein_coding	3.09e-05	5.25e-03	-2.040642	7.21e+00	7.13e+00	3.48e-02	3.29e-02	5.00e+00	5.29e+00	5.09e+00	7.33e-03	8.98e-03	7.80e-03
chr11	4257557	4272514	ENSMUSG00000034394	0.5519	+	Lif	protein_coding	3.19e-05	5.35e-03	3.574909	0.00e+00	2.81e+00	0.00e+00	1.06e-03	5.39e+00	5.73e+00	5.58e+00	7.22e-03	9.15e-03	8.27e-03
chr9	20907209	20959888	ENSMUSG00000004099	0.5027	-	Dnmt1	protein_coding	3.35e-05	5.56e-03	-1.486801	9.86e+00	1.00e+01	2.29e-01	2.53e-01	8.48e+00	8.67e+00	8.16e+00	8.76e-02	9.96e-02	7.01e-02
chr13	74639568	74693201	ENSMUSG00000021583	0.3935	+	Erap1	protein_coding	3.51e-05	5.77e-03	1.907169	6.11e+00	5.52e+00	6.81e-03	4.51e-03	6.38e+00	8.66e+00	7.32e+00	8.22e-03	4.04e-02	1.59e-02
chr8	88521354	88594884	ENSMUSG00000031661	0.5189	+	Nkd1	protein_coding	3.60e-05	5.84e-03	-1.878068	6.75e+00	6.85e+00	2.69e-02	2.86e-02	5.67e+00	3.81e+00	4.70e+00	1.26e-02	3.26e-03	6.28e-03
chr9	54286486	54341786	ENSMUSG00000046167	0.4529	+	Gldn	protein_coding	3.79e-05	6.08e-03	-1.598768	7.95e+00	8.12e+00	5.83e-02	6.56e-02	6.60e+00	6.41e+00	6.29e+00	2.27e-02	1.99e-02	1.82e-02
chr18	42637432	43059471	ENSMUSG00000024500	0.4196	-	Ppp2r2b	protein_coding	4.57e-05	7.27e-03	-2.776104	6.43e+00	5.67e+00	1.56e-02	9.15e-03	3.32e+00	3.58e+00	3.00e+00	1.65e-03	2.01e-03	1.28e-03
chr15	10568969	10714624	ENSMUSG00000022246	0.4448	-	Rai14	protein_coding	4.76e-05	7.48e-03	2.012824	5.70e+00	5.91e+00	6.39e-03	7.39e-03	7.61e+00	8.06e+00	7.75e+00	2.44e-02	3.33e-02	2.68e-02

Download the DEG result list for Wt_vs_Tg197.
Download the whole result list for Wt_vs_Tg197.

DEG table for the contrast Tg197_vs_Tg197_C

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Tg197_vs_Tg197_C. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_Tg197_vs_Tg197_C	log2_normalized_counts_GK3R193-Tg197-1	log2_normalized_counts_GK3R194-Tg197-2	log2_normalized_counts_GK3R195-Tg197-3	rpgm_normalized_counts_GK3R193-Tg197-1	rpgm_normalized_counts_GK3R194-Tg197-2	rpgm_normalized_counts_GK3R195-Tg197-3	log2_normalized_counts_GK3R196-Tg197-C1	log2_normalized_counts_GK3R198-Tg197-C3	rpgm_normalized_counts_GK3R196-Tg197-C1	rpgm_normalized_counts_GK3R198-Tg197-C3
chr7	4772373	4782857	ENSMUSG00000004371	0.5362	-	Il11	protein_coding	6.08e-21	9.08e-17	3.417602	6.46e+00	6.17e+00	5.39e+00	3.56e-02	2.90e-02	1.68e-02	1.01e+01	8.40e+00	4.50e-01	1.37e-01
chr14	46383520	46390669	ENSMUSG00000021835	0.5305	-	Bmp4	protein_coding	4.49e-12	3.35e-08	-2.879776	6.49e+00	8.06e+00	8.85e+00	2.17e-02	6.50e-02	1.12e-01	5.09e+00	5.32e+00	8.06e-03	9.53e-03
chr10	117277331	117282321	ENSMUSG00000069516	0.4708	-	Lyz2	protein_coding	4.17e-10	2.07e-06	-2.894338	7.77e+00	8.04e+00	7.45e+00	1.07e-01	1.29e-01	8.53e-02	5.00e+00	4.75e+00	1.52e-02	1.27e-02
chr7	19696109	19699188	ENSMUSG00000002985	0.5464	-	Apoe	protein_coding	2.49e-09	6.97e-06	2.571542	4.91e+00	3.17e+00	3.91e+00	8.35e-03	2.30e-03	4.03e-03	6.36e+00	7.04e+00	2.33e-02	3.77e-02
chr6	124996694	125003096	ENSMUSG00000030329	0.5627	+	Pianp	protein_coding	2.60e-09	6.97e-06	-2.354496	8.22e+00	7.98e+00	3.17e+00	4.61e-02	3.91e-02	1.24e-03	0.00e+00	6.17e+00	0.00e+00	1.10e-02
chr10	80798198	80804924	ENSMUSG00000020211	0.5664	+	Sf3a2	protein_coding	2.91e-09	6.97e-06	2.114648	8.72e+00	7.38e+00	7.22e+00	8.47e-02	3.33e-02	2.99e-02	9.38e+00	1.05e+01	1.34e-01	2.94e-01
chr1	143999338	144004161	ENSMUSG00000026360	0.4362	-	Rgs2	protein_coding	3.27e-09	6.97e-06	2.188216	6.17e+00	6.02e+00	6.17e+00	1.08e-02	9.77e-03	1.08e-02	8.90e+00	7.29e+00	7.30e-02	2.37e-02
chr15	97854425	97910630	ENSMUSG00000022479	0.4995	-	Vdr	protein_coding	4.73e-09	8.84e-06	2.093056	6.79e+00	5.83e+00	5.46e+00	1.58e-02	8.06e-03	6.19e-03	8.86e+00	7.10e+00	6.69e-02	1.96e-02
chr1	72824503	72852474	ENSMUSG00000039323	0.4843	+	Igfbp2	protein_coding	7.73e-09	1.28e-05	-2.209862	9.34e+00	9.90e+00	1.03e+01	4.10e-01	6.05e-01	8.01e-01	7.62e+00	7.75e+00	1.24e-01	1.36e-01
chr2	16356304	16755839	ENSMUSG00000026748	0.3807	+	Plxdc2	protein_coding	1.24e-08	1.85e-05	-2.152530	8.58e+00	1.07e+01	9.37e+00	6.61e-02	2.93e-01	1.14e-01	7.61e+00	7.75e+00	3.35e-02	3.72e-02
chr1	134182176	134190181	ENSMUSG00000064246	0.5034	+	Chil1	protein_coding	1.88e-08	2.55e-05	2.731804	4.32e+00	5.04e+00	4.09e+00	5.66e-03	9.53e-03	4.76e-03	6.60e+00	7.73e+00	2.86e-02	6.31e-02
chrX	60223290	60592698	ENSMUSG00000062949	0.3852	-	Atp11c	protein_coding	1.13e-07	1.41e-04	1.927636	8.23e+00	7.99e+00	6.57e+00	4.98e-02	4.21e-02	1.56e-02	8.85e+00	1.02e+01	7.66e-02	1.97e-01
chr5	149614287	149636376	ENSMUSG00000029657	0.4550	-	Hsph1	protein_coding	1.40e-07	1.61e-04	1.762980	1.04e+01	8.75e+00	9.93e+00	1.30e-01	4.21e-02	9.53e-02	1.19e+01	1.11e+01	3.83e-01	2.21e-01
chr14	56082166	56085273	ENSMUSG00000022157	0.4569	-	Mcpt8	protein_coding	1.84e-07	1.97e-04	2.021349	5.83e+00	6.52e+00	6.11e+00	1.13e-02	1.84e-02	1.37e-02	8.51e+00	7.81e+00	7.35e-02	4.52e-02
chr1	78816758	78820028	ENSMUSG00000047330	0.4720	+	Kcne4	protein_coding	3.10e-07	3.09e-04	2.005625	5.75e+00	4.25e+00	4.52e+00	1.69e-02	5.75e-03	7.03e-03	7.33e+00	6.58e+00	5.11e-02	3.04e-02
chr19	4611785	4615667	ENSMUSG00000045045	0.6467	-	Lrfn4	protein_coding	6.61e-07	6.18e-04	1.862159	7.45e+00	5.81e+00	6.49e+00	1.13e-01	3.56e-02	5.77e-02	8.06e+00	9.00e+00	1.72e-01	3.31e-01
chrX	142851146	142966728	ENSMUSG00000042225	0.3787	-	Ammecr1	protein_coding	8.37e-07	7.36e-04	-2.112303	7.67e+00	8.04e+00	7.74e+00	3.58e-02	4.66e-02	3.78e-02	5.83e+00	5.58e+00	9.93e-03	8.34e-03
chr8	109575128	109579172	ENSMUSG00000031722	0.5125	-	Hp	protein_coding	8.89e-07	7.38e-04	-1.841465	1.03e+01	1.08e+01	1.13e+01	4.31e-01	6.39e-01	8.86e-01	9.13e+00	8.89e+00	1.97e-01	1.67e-01
chr4	106442329	106464329	ENSMUSG00000044254	0.5257	-	Pcsk9	protein_coding	1.28e-06	1.00e-03	-4.772590	4.32e+00	4.95e+00	4.95e+00	8.38e-03	1.32e-02	1.32e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr13	30336441	30382867	ENSMUSG00000049115	0.4305	+	Agtr1a	protein_coding	1.42e-06	1.06e-03	-3.154123	5.39e+00	6.36e+00	6.69e+00	8.68e-03	1.72e-02	2.16e-02	3.17e+00	3.00e+00	1.69e-03	1.48e-03
chr3	159495433	159529955	ENSMUSG00000028175	0.3469	+	Depdc1a	protein_coding	1.95e-06	1.36e-03	2.425655	4.25e+00	4.17e+00	4.17e+00	8.71e-03	8.22e-03	8.22e-03	6.38e+00	6.83e+00	3.97e-02	5.47e-02
chr14	47240944	47276857	ENSMUSG00000037572	0.4054	-	Wdhd1	protein_coding	2.01e-06	1.36e-03	1.886267	5.93e+00	5.36e+00	5.73e+00	9.27e-03	6.18e-03	8.03e-03	7.82e+00	7.29e+00	3.48e-02	2.39e-02
chr8	56294585	56321043	ENSMUSG00000031613	0.3691	+	Hpgd	protein_coding	2.15e-06	1.40e-03	-1.709550	8.17e+00	7.98e+00	9.47e+00	1.37e-01	1.21e-01	3.39e-01	6.39e+00	7.42e+00	3.97e-02	8.14e-02
chr13	4590750	4609174	ENSMUSG00000045410	0.4343	-	Akr1e1	protein_coding	3.11e-06	1.94e-03	-2.681178	5.36e+00	7.02e+00	6.75e+00	6.39e-03	2.06e-02	1.71e-02	4.25e+00	3.32e+00	2.88e-03	1.44e-03
chr4	126147744	126149875	ENSMUSG00000050212	0.6426	+	Eva1b	protein_coding	3.47e-06	2.07e-03	1.758910	7.47e+00	6.67e+00	6.89e+00	1.20e-01	6.90e-02	8.07e-02	7.91e+00	9.36e+00	1.64e-01	4.48e-01
chr19	60864051	60874556	ENSMUSG00000024997	0.4160	-	Prdx3	protein_coding	5.92e-06	3.40e-03	-1.766836	8.04e+00	9.14e+00	8.62e+00	1.40e-01	3.01e-01	2.11e-01	6.93e+00	6.87e+00	6.48e-02	6.22e-02
chr5	72626858	72628028	ENSMUSG00000105124	0.4851	-	Gm5297	transcribed_processed_pseudogene	6.25e-06	3.46e-03	2.263034	5.25e+00	2.32e+00	4.09e+00	2.96e-02	3.20e-03	1.28e-02	6.69e+00	6.48e+00	8.15e-02	7.03e-02
chr6	67035096	67037457	ENSMUSG00000036390	0.5085	-	Gadd45a	protein_coding	8.34e-06	4.45e-03	-2.064736	6.34e+00	7.62e+00	7.28e+00	1.82e-02	4.46e-02	3.51e-02	4.91e+00	5.29e+00	6.60e-03	8.65e-03
chr11	83291699	83294632	ENSMUSG00000093483	0.4277	+	AA465934	processed_transcript	8.88e-06	4.58e-03	-1.431923	5.52e+00	9.39e+00	9.54e+00	1.80e-02	2.67e-01	2.97e-01	4.52e+00	8.40e+00	8.78e-03	1.35e-01
chr17	34856412	34882042	ENSMUSG00000092511	0.4845	-	Gm20547	protein_coding	9.74e-06	4.85e-03	-1.615274	9.67e+00	1.04e+01	1.08e+01	6.45e-01	1.07e+00	1.38e+00	8.68e+00	8.79e+00	3.23e-01	3.49e-01
chr5	21543559	21575904	ENSMUSG00000039883	0.4349	+	Lrrc17	protein_coding	1.09e-05	5.27e-03	2.072088	1.38e+01	1.37e+01	1.20e+01	4.61e+00	4.50e+00	1.38e+00	1.47e+01	1.60e+01	8.48e+00	2.09e+01
chr9	48591877	48605153	ENSMUSG00000032271	0.4501	-	Nnmt	protein_coding	1.15e-05	5.37e-03	-1.721699	7.51e+00	7.43e+00	7.71e+00	6.59e-02	6.23e-02	7.61e-02	5.67e+00	5.98e+00	1.82e-02	2.26e-02
chr1	6916559	6923588	ENSMUSG00000102135	0.4255	+	Gm37108	processed_pseudogene	1.25e-05	5.64e-03	-2.452512	5.00e+00	7.82e+00	5.75e+00	2.48e-02	1.80e-01	4.24e-02	4.39e+00	4.09e+00	1.60e-02	1.28e-02
chr2	57106830	57124003	ENSMUSG00000026826	0.4566	-	Nr4a2	protein_coding	1.36e-05	5.94e-03	1.787859	5.98e+00	5.93e+00	4.64e+00	9.71e-03	9.40e-03	3.76e-03	7.95e+00	6.57e+00	3.87e-02	1.47e-02
chr6	55336432	55348555	ENSMUSG00000004655	0.5291	+	Aqp1	protein_coding	1.42e-05	5.94e-03	1.389449	8.51e+00	8.03e+00	8.27e+00	1.21e-01	8.67e-02	1.02e-01	1.02e+01	8.92e+00	3.81e-01	1.61e-01
chr2	127336159	127338376	ENSMUSG00000027368	0.5762	+	Dusp2	protein_coding	1.46e-05	5.94e-03	2.539159	4.25e+00	1.00e+00	3.46e+00	5.84e-03	3.24e-04	3.24e-03	6.39e+00	5.32e+00	2.69e-02	1.27e-02
chr14	56258838	56262260	ENSMUSG00000015437	0.4969	-	Gzmb	protein_coding	1.47e-05	5.94e-03	2.763300	2.00e+00	3.81e+00	0.00e+00	1.64e-03	7.10e-03	0.00e+00	6.07e+00	4.25e+00	3.60e-02	9.83e-03
chr13	92751590	92794818	ENSMUSG00000021702	0.4601	-	Thbs4	protein_coding	1.55e-05	6.10e-03	-1.708126	1.16e+01	1.18e+01	1.21e+01	1.20e+00	1.35e+00	1.69e+00	9.95e+00	1.04e+01	3.71e-01	4.93e-01
chr5	99979061	99979663	ENSMUSG00000035364	0.6235	+	4930524J08Rik	protein_coding	1.71e-05	6.57e-03	1.688161	6.85e+00	5.46e+00	6.27e+00	1.03e-01	3.87e-02	6.85e-02	7.81e+00	8.14e+00	2.01e-01	2.54e-01
chr2	76369984	76383768	ENSMUSG00000042369	0.4221	+	Rbm45	protein_coding	1.79e-05	6.70e-03	-1.733035	7.28e+00	8.68e+00	7.40e+00	5.99e-02	1.59e-01	6.53e-02	6.00e+00	6.38e+00	2.45e-02	3.19e-02
chr16	22381309	22439719	ENSMUSG00000013089	0.4637	-	Etv5	protein_coding	2.14e-05	7.61e-03	1.492504	7.36e+00	6.70e+00	7.45e+00	2.27e-02	1.43e-02	2.42e-02	8.90e+00	8.47e+00	6.62e-02	4.91e-02
chr5	99977686	99978858	ENSMUSG00000091623	0.6786	+	Gm17092	antisense	2.20e-05	7.61e-03	1.702532	6.67e+00	5.36e+00	6.11e+00	8.07e-02	3.20e-02	5.44e-02	7.61e+00	8.04e+00	1.56e-01	2.10e-01
chr7	63444751	63759028	ENSMUSG00000033510	0.4307	+	Otud7a	protein_coding	2.21e-05	7.61e-03	3.027185	2.00e+00	3.81e+00	2.32e+00	6.67e-04	2.89e-03	8.90e-04	4.70e+00	6.63e+00	5.56e-03	2.18e-02
chr6	37686239	37687195	ENSMUSG00000107035	0.5517	-	Ybx1-ps2	processed_pseudogene	2.24e-05	7.61e-03	1.522292	7.50e+00	4.46e+00	5.46e+00	1.44e-01	1.68e-02	3.44e-02	8.02e+00	7.74e+00	2.06e-01	1.70e-01
chr17	34856374	34862518	ENSMUSG00000090231	0.5196	-	Cfb	protein_coding	2.33e-05	7.65e-03	-1.572397	1.12e+01	1.18e+01	1.23e+01	3.33e-01	5.29e-01	7.39e-01	1.02e+01	1.03e+01	1.77e-01	1.81e-01
chr9	106453291	106464012	ENSMUSG00000023495	0.5779	+	Pcbp4	protein_coding	2.36e-05	7.65e-03	1.513291	8.27e+00	7.30e+00	7.26e+00	3.05e-02	1.56e-02	1.51e-02	8.74e+00	9.55e+00	4.25e-02	7.43e-02
chr9	36890982	37147407	ENSMUSG00000035934	0.4626	-	Pknox2	protein_coding	2.41e-05	7.66e-03	-3.183222	5.13e+00	5.32e+00	5.09e+00	1.80e-03	2.06e-03	1.75e-03	2.32e+00	1.58e+00	2.12e-04	1.06e-04
chr2	84936579	84958509	ENSMUSG00000027074	0.4679	+	Slc43a3	protein_coding	2.54e-05	7.90e-03	1.443980	8.38e+00	7.15e+00	8.19e+00	4.65e-02	1.98e-02	4.09e-02	9.47e+00	9.42e+00	9.93e-02	9.58e-02
chr6	82725025	82774454	ENSMUSG00000000628	0.4908	-	Hk2	protein_coding	2.84e-05	8.42e-03	1.392610	9.49e+00	7.56e+00	8.98e+00	1.50e-01	3.93e-02	1.05e-01	1.04e+01	1.01e+01	2.80e-01	2.35e-01
chr4	89274471	89294653	ENSMUSG00000044303	0.4376	-	Cdkn2a	protein_coding	2.84e-05	8.42e-03	-1.571416	8.88e+00	9.74e+00	9.18e+00	1.82e-01	3.32e-01	2.26e-01	7.81e+00	7.67e+00	8.70e-02	7.84e-02
chr7	114415281	114539251	ENSMUSG00000030671	0.3667	+	Pde3b	protein_coding	2.88e-05	8.42e-03	1.673620	6.00e+00	5.32e+00	5.25e+00	7.87e-03	4.87e-03	4.62e-03	7.55e+00	6.85e+00	2.32e-02	1.42e-02
chr13	98489348	98492001	ENSMUSG00000092116	0.4201	-	Gm10320	protein_coding	2.98e-05	8.57e-03	1.486017	7.68e+00	6.66e+00	8.25e+00	1.42e-01	6.96e-02	2.12e-01	9.01e+00	9.29e+00	3.59e-01	4.35e-01
chr5	121566027	121593824	ENSMUSG00000029455	0.5095	-	Aldh2	protein_coding	3.19e-05	8.99e-03	-1.626684	8.16e+00	8.75e+00	8.46e+00	3.94e-02	5.93e-02	4.84e-02	7.04e+00	6.63e+00	1.81e-02	1.35e-02
chr10	5799160	5805600	ENSMUSG00000019773	0.4372	-	Fbxo5	protein_coding	3.25e-05	8.99e-03	1.399748	7.55e+00	6.97e+00	6.67e+00	6.42e-02	4.26e-02	3.47e-02	8.83e+00	8.10e+00	1.56e-01	9.41e-02
chr9	96813467	96814334	ENSMUSG00000100922	0.5680	-	Gm8520	processed_pseudogene	3.53e-05	9.59e-03	2.887525	2.81e+00	2.00e+00	2.00e+00	4.80e-03	2.40e-03	2.40e-03	5.32e+00	5.09e+00	3.12e-02	2.64e-02
chr11	60932033	60952811	ENSMUSG00000018932	0.5151	+	Map2k3	protein_coding	3.72e-05	9.79e-03	1.465597	1.04e+01	9.70e+00	1.06e+01	1.44e-01	8.79e-02	1.62e-01	1.16e+01	1.19e+01	3.33e-01	3.92e-01
chr4	155398763	155421704	ENSMUSG00000084803	0.4660	-	5830444B04Rik	processed_transcript	3.74e-05	9.79e-03	-4.345775	3.17e+00	4.17e+00	5.09e+00	2.13e-03	4.53e-03	8.79e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr16	15623897	15637400	ENSMUSG00000022673	0.4176	-	Mcm4	protein_coding	3.90e-05	9.97e-03	1.371701	8.06e+00	7.59e+00	8.10e+00	8.10e-02	5.85e-02	8.35e-02	9.57e+00	8.99e+00	2.32e-01	1.54e-01
chr7	38097984	38107534	ENSMUSG00000002068	0.4745	-	Ccne1	protein_coding	3.94e-05	9.97e-03	1.466211	7.45e+00	6.79e+00	6.64e+00	2.99e-02	1.89e-02	1.70e-02	8.53e+00	8.42e+00	6.33e-02	5.86e-02
chr1	164437109	164458355	ENSMUSG00000026576	0.4772	-	Atp1b1	protein_coding	4.09e-05	1.01e-02	2.126532	4.58e+00	3.46e+00	3.32e+00	4.67e-03	2.03e-03	1.83e-03	6.32e+00	5.67e+00	1.61e-02	1.02e-02
chr14	78277445	78308043	ENSMUSG00000022015	0.4484	-	Tnfsf11	protein_coding	4.21e-05	1.01e-02	1.697310	6.09e+00	5.25e+00	5.17e+00	2.81e-02	1.55e-02	1.47e-02	7.74e+00	6.54e+00	8.94e-02	3.86e-02
chr5	104046306	104065379	ENSMUSG00000029310	0.4563	+	Nudt9	protein_coding	4.23e-05	1.01e-02	-1.653573	6.04e+00	9.02e+00	6.69e+00	1.18e-02	9.40e-02	1.85e-02	5.75e+00	6.52e+00	9.60e-03	1.65e-02
chr15	101254269	101274795	ENSMUSG00000023034	0.5450	+	Nr4a1	protein_coding	4.27e-05	1.01e-02	1.949119	5.46e+00	3.91e+00	5.39e+00	1.00e-02	3.26e-03	9.54e-03	7.22e+00	6.79e+00	3.45e-02	2.56e-02
chr6	47835661	47873537	ENSMUSG00000062519	0.4199	+	Zfp398	protein_coding	4.59e-05	1.07e-02	-1.520631	9.27e+00	1.01e+01	8.95e+00	6.79e-02	1.18e-01	5.42e-02	8.03e+00	7.94e+00	2.87e-02	2.68e-02
chr7	57878806	57881226	ENSMUSG00000109086	0.3602	-	Gm5596	processed_pseudogene	4.83e-05	1.11e-02	2.051048	4.58e+00	3.81e+00	4.39e+00	1.84e-02	1.04e-02	1.60e-02	6.46e+00	6.23e+00	6.95e-02	5.92e-02
chr9	98422961	98446575	ENSMUSG00000046402	0.4941	+	Rbp1	protein_coding	4.94e-05	1.12e-02	1.505736	7.50e+00	7.70e+00	7.08e+00	1.22e-01	1.40e-01	9.07e-02	8.75e+00	9.13e+00	2.90e-01	3.80e-01
chr7	4784557	4789656	ENSMUSG00000030431	0.5029	-	Tmem238	protein_coding	5.10e-05	1.14e-02	1.928917	5.25e+00	5.00e+00	5.09e+00	9.76e-03	8.18e-03	8.70e-03	6.11e+00	7.61e+00	1.79e-02	5.12e-02
chr5	39613935	39755475	ENSMUSG00000051022	0.4101	-	Hs3st1	protein_coding	5.41e-05	1.19e-02	2.029747	5.09e+00	4.81e+00	4.81e+00	7.89e-03	6.46e-03	6.46e-03	7.20e+00	6.61e+00	3.49e-02	2.32e-02
chr2	91932824	91975864	ENSMUSG00000040479	0.5322	-	Dgkz	protein_coding	5.53e-05	1.20e-02	1.381318	7.17e+00	7.08e+00	6.86e+00	4.62e-03	4.33e-03	3.71e-03	8.93e+00	7.62e+00	1.58e-02	6.33e-03
chr2	164354070	164389095	ENSMUSG00000017002	0.4508	-	Slpi	protein_coding	6.18e-05	1.32e-02	1.418814	9.63e+00	8.12e+00	8.84e+00	2.11e-01	7.39e-02	1.22e-01	9.92e+00	1.08e+01	2.59e-01	4.66e-01
chr16	37882542	37883631	ENSMUSG00000083405	0.5633	+	Gm15725	transcribed_processed_pseudogene	6.89e-05	1.45e-02	1.522498	7.37e+00	5.39e+00	6.46e+00	1.31e-01	3.28e-02	6.95e-02	7.73e+00	8.46e+00	1.69e-01	2.81e-01
chr6	65671590	65712326	ENSMUSG00000049001	0.4014	+	Ndnf	protein_coding	7.59e-05	1.57e-02	-1.638261	7.04e+00	7.77e+00	7.83e+00	1.26e-02	2.10e-02	2.19e-02	6.13e+00	5.75e+00	6.65e-03	5.10e-03
chr4	102087543	102607259	ENSMUSG00000028525	0.4042	+	Pde4b	protein_coding	7.86e-05	1.61e-02	1.693366	6.67e+00	5.58e+00	4.52e+00	5.61e-03	2.61e-03	1.22e-03	7.31e+00	7.74e+00	8.77e-03	1.18e-02
chr2	151911210	151945337	ENSMUSG00000027460	0.5022	+	Angpt4	protein_coding	8.21e-05	1.66e-02	-1.696608	6.32e+00	7.45e+00	7.39e+00	4.08e-02	9.00e-02	8.63e-02	5.21e+00	5.64e+00	1.86e-02	2.53e-02
chr7	25626654	25635100	ENSMUSG00000059479	0.5666	+	B3gnt8	protein_coding	8.42e-05	1.68e-02	-3.544321	3.91e+00	3.46e+00	3.17e+00	1.76e-03	1.25e-03	1.00e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr2	91457511	91513779	ENSMUSG00000027253	0.4770	+	Lrp4	protein_coding	9.39e-05	1.85e-02	-1.625200	6.30e+00	7.29e+00	8.09e+00	1.11e-02	2.22e-02	3.87e-02	5.78e+00	5.78e+00	7.69e-03	7.69e-03
chr9	110722085	110747145	ENSMUSG00000032492	0.5504	-	Pth1r	protein_coding	1.00e-04	1.95e-02	-1.520603	7.17e+00	8.48e+00	8.32e+00	3.63e-02	9.05e-02	8.09e-02	6.87e+00	6.21e+00	2.94e-02	1.85e-02
chr15	98877778	98894540	ENSMUSG00000023755	0.4725	-	Rhebl1	protein_coding	1.02e-04	1.96e-02	1.552622	6.44e+00	5.98e+00	5.73e+00	2.67e-02	1.92e-02	1.61e-02	7.34e+00	7.88e+00	4.99e-02	7.25e-02
chr2	164389393	164405160	ENSMUSG00000016995	0.5153	-	Matn4	protein_coding	1.07e-04	2.03e-02	2.421464	2.00e+00	1.00e+00	3.00e+00	1.08e-03	3.62e-04	2.53e-03	4.32e+00	4.91e+00	6.87e-03	1.05e-02
chr6	134920401	134925513	ENSMUSG00000003031	0.4381	+	Cdkn1b	protein_coding	1.11e-04	2.08e-02	-1.713287	7.25e+00	7.28e+00	6.86e+00	3.22e-02	3.28e-02	2.45e-02	5.75e+00	5.00e+00	1.13e-02	6.61e-03
chr11	98036623	98053462	ENSMUSG00000017400	0.5295	-	Stac2	protein_coding	1.21e-04	2.23e-02	2.357552	4.32e+00	3.00e+00	3.00e+00	4.94e-03	1.82e-03	1.82e-03	6.09e+00	5.78e+00	1.74e-02	1.40e-02
chr7	138835823	138846273	ENSMUSG00000041775	0.4717	-	Mapk1ip1	protein_coding	1.25e-04	2.28e-02	-2.584963	4.32e+00	5.91e+00	5.78e+00	1.42e-02	4.42e-02	4.04e-02	3.58e+00	1.58e+00	8.23e-03	1.50e-03
chr13	49608046	49624501	ENSMUSG00000021390	0.3622	+	Ogn	protein_coding	1.28e-04	2.30e-02	-1.461417	7.63e+00	8.10e+00	7.99e+00	7.11e-02	9.90e-02	9.14e-02	6.38e+00	6.54e+00	2.96e-02	3.32e-02
chr8	75109569	75128439	ENSMUSG00000005410	0.4650	+	Mcm5	protein_coding	1.36e-04	2.41e-02	1.300910	7.66e+00	6.92e+00	7.33e+00	4.13e-02	2.47e-02	3.29e-02	8.88e+00	8.34e+00	9.65e-02	6.64e-02
chr5	25759997	25850688	ENSMUSG00000056367	0.4536	+	Actr3b	protein_coding	1.37e-04	2.42e-02	-1.496607	7.52e+00	8.18e+00	8.57e+00	5.64e-02	8.91e-02	1.17e-01	6.92e+00	6.34e+00	3.70e-02	2.47e-02
chr4	99193934	99259787	ENSMUSG00000028550	0.4179	+	Atg4c	protein_coding	1.41e-04	2.44e-02	-2.909802	5.83e+00	5.83e+00	3.32e+00	1.50e-02	1.50e-02	2.42e-03	3.17e+00	1.00e+00	2.15e-03	2.68e-04
chr13	117208536	117274415	ENSMUSG00000021728	0.4192	+	Emb	protein_coding	1.43e-04	2.46e-02	1.334591	9.16e+00	9.23e+00	8.69e+00	7.49e-02	7.84e-02	5.38e-02	1.01e+01	1.06e+01	1.48e-01	2.01e-01
chr15	43020794	43170826	ENSMUSG00000051920	0.3829	-	Rspo2	protein_coding	1.50e-04	2.53e-02	-1.328685	9.05e+00	8.91e+00	9.21e+00	1.25e-01	1.13e-01	1.40e-01	7.11e+00	8.17e+00	3.23e-02	6.78e-02
chr19	23141226	23166911	ENSMUSG00000033863	0.4756	+	Klf9	protein_coding	1.51e-04	2.53e-02	1.347165	7.45e+00	2.58e+00	4.52e+00	5.35e-02	1.54e-03	6.77e-03	7.55e+00	7.31e+00	5.72e-02	4.86e-02
chr10	76253853	76261159	ENSMUSG00000033208	0.4706	+	S100b	protein_coding	1.56e-04	2.58e-02	-2.718818	4.09e+00	4.70e+00	5.17e+00	6.83e-03	1.07e-02	1.49e-02	2.81e+00	0.00e+00	2.56e-03	0.00e+00
chr7	84338095	84347869	ENSMUSG00000109341	0.4615	+	Gm30873	antisense	1.57e-04	2.58e-02	-2.399270	5.58e+00	5.39e+00	6.52e+00	3.76e-02	3.28e-02	7.27e-02	3.17e+00	3.81e+00	6.39e-03	1.04e-02
chr9	7272514	7283331	ENSMUSG00000050578	0.3772	+	Mmp13	protein_coding	1.64e-04	2.64e-02	-1.328771	9.88e+00	1.09e+01	1.09e+01	3.82e-01	7.80e-01	7.66e-01	8.81e+00	9.67e+00	1.82e-01	3.30e-01
chr10	51480612	51496613	ENSMUSG00000062593	0.4044	+	Lilrb4a	protein_coding	1.66e-04	2.64e-02	-3.345775	3.32e+00	5.13e+00	4.00e+00	2.12e-03	8.02e-03	3.54e-03	1.58e+00	0.00e+00	4.72e-04	0.00e+00
chr10	51490956	51496611	ENSMUSG00000112148	0.4203	+	Lilrb4	protein_coding	1.66e-04	2.64e-02	-3.345775	3.32e+00	5.13e+00	4.00e+00	8.95e-04	3.38e-03	1.49e-03	1.58e+00	0.00e+00	1.99e-04	0.00e+00
chr3	100938860	100969663	ENSMUSG00000033222	0.4528	-	Ttf2	protein_coding	1.68e-04	2.65e-02	1.702532	5.61e+00	4.39e+00	5.17e+00	6.52e-03	2.72e-03	4.75e-03	6.93e+00	6.75e+00	1.64e-02	1.45e-02
chr7	3332955	3368221	ENSMUSG00000069806	0.4652	+	Cacng7	protein_coding	1.71e-04	2.66e-02	-1.682638	7.59e+00	6.91e+00	7.02e+00	7.46e-02	4.62e-02	5.01e-02	5.46e+00	5.58e+00	1.67e-02	1.83e-02
chr8	70597490	70608872	ENSMUSG00000070003	0.5753	-	Ssbp4	protein_coding	1.76e-04	2.70e-02	1.352644	8.64e+00	8.16e+00	8.04e+00	3.72e-02	2.67e-02	2.46e-02	9.12e+00	1.00e+01	5.21e-02	9.89e-02
chr12	110601452	110666945	ENSMUSG00000018707	0.4933	+	Dync1h1	protein_coding	1.85e-04	2.82e-02	-1.367157	1.01e+01	1.10e+01	1.08e+01	1.19e-01	2.22e-01	1.96e-01	9.27e+00	9.32e+00	6.82e-02	7.04e-02
chr11	70212752	70216417	ENSMUSG00000040938	0.5706	+	Slc16a11	protein_coding	1.87e-04	2.82e-02	2.423682	3.32e+00	3.00e+00	3.00e+00	2.39e-03	1.86e-03	1.86e-03	5.70e+00	5.36e+00	1.35e-02	1.06e-02
chr14	69029238	69041804	ENSMUSG00000014813	0.4419	+	Stc1	protein_coding	1.89e-04	2.82e-02	1.260214	8.02e+00	7.38e+00	7.74e+00	5.67e-02	3.65e-02	4.68e-02	9.12e+00	8.87e+00	1.22e-01	1.02e-01
chr14	65837302	65866607	ENSMUSG00000022035	0.4480	+	Ccdc25	protein_coding	1.95e-04	2.85e-02	-1.411493	9.54e+00	1.04e+01	1.02e+01	1.88e-01	3.37e-01	2.97e-01	8.99e+00	8.27e+00	1.28e-01	7.77e-02
chr7	130865756	130913312	ENSMUSG00000040268	0.4118	+	Plekha1	protein_coding	1.95e-04	2.85e-02	-1.526598	9.32e+00	7.53e+00	7.29e+00	4.33e-02	1.25e-02	1.05e-02	7.17e+00	6.38e+00	9.70e-03	5.56e-03
chr1	173962568	173982744	ENSMUSG00000026535	0.3715	-	Ifi202b	protein_coding	1.96e-04	2.85e-02	1.463045	1.58e+00	4.52e+00	8.04e+00	1.35e-03	1.48e-02	1.77e-01	8.41e+00	7.58e+00	2.29e-01	1.29e-01
chr17	6978860	7011299	ENSMUSG00000094724	0.4614	+	Rnaset2b	protein_coding	2.01e-04	2.89e-02	-1.380822	8.07e+00	7.38e+00	8.30e+00	6.47e-02	3.99e-02	7.59e-02	5.70e+00	7.13e+00	1.23e-02	3.36e-02
chr11	101070012	101077672	ENSMUSG00000001751	0.5306	+	Naglu	protein_coding	2.05e-04	2.91e-02	-1.756074	6.21e+00	6.70e+00	6.98e+00	2.46e-02	3.48e-02	4.22e-02	4.75e+00	5.04e+00	8.77e-03	1.08e-02
chr5	73019987	73256619	ENSMUSG00000070733	0.4440	-	Fryl	protein_coding	2.06e-04	2.91e-02	1.313815	7.61e+00	5.95e+00	5.98e+00	9.85e-03	3.08e-03	3.13e-03	8.15e+00	7.95e+00	1.43e-02	1.25e-02
chr12	80518277	80630972	ENSMUSG00000021130	0.4764	+	Galnt16	protein_coding	2.10e-04	2.92e-02	2.031478	4.75e+00	3.81e+00	3.32e+00	2.96e-03	1.48e-03	1.02e-03	5.58e+00	6.51e+00	5.35e-03	1.02e-02
chr15	58094044	58135082	ENSMUSG00000022360	0.4014	-	Atad2	protein_coding	2.11e-04	2.92e-02	1.254911	7.29e+00	7.24e+00	6.86e+00	1.72e-02	1.67e-02	1.28e-02	8.74e+00	7.93e+00	4.76e-02	2.70e-02
chr18	60911780	60918561	ENSMUSG00000036412	0.5268	+	Arsi	protein_coding	2.18e-04	2.99e-02	1.439623	5.83e+00	4.32e+00	5.43e+00	2.74e-02	9.30e-03	2.05e-02	6.69e+00	6.83e+00	4.99e-02	5.53e-02
chr19	47083471	47090625	ENSMUSG00000071528	0.4299	-	Usmg5	protein_coding	2.25e-04	3.06e-02	1.273044	9.35e+00	8.58e+00	9.85e+00	2.76e-01	1.63e-01	3.92e-01	1.06e+01	1.06e+01	6.64e-01	6.76e-01
chr12	111669361	111672338	ENSMUSG00000001270	0.6192	-	Ckb	protein_coding	2.33e-04	3.13e-02	1.314147	7.16e+00	6.86e+00	7.23e+00	2.73e-02	2.21e-02	2.86e-02	8.76e+00	7.93e+00	8.32e-02	4.67e-02
chr2	119594297	119607502	ENSMUSG00000085438	0.4053	+	1700020I14Rik	lincRNA	2.43e-04	3.24e-02	-1.510195	7.92e+00	8.38e+00	8.08e+00	9.67e-02	1.33e-01	1.08e-01	7.11e+00	5.91e+00	5.48e-02	2.36e-02
chr5	104299171	104311469	ENSMUSG00000029306	0.4065	+	Ibsp	protein_coding	2.45e-04	3.24e-02	-2.736966	1.58e+00	3.46e+00	4.00e+00	9.32e-04	4.66e-03	6.99e-03	0.00e+00	1.00e+00	0.00e+00	4.66e-04
chr1	160085029	160153580	ENSMUSG00000026725	0.4388	-	Tnn	protein_coding	2.53e-04	3.32e-02	-1.303862	9.14e+00	9.21e+00	1.01e+01	2.49e-01	2.62e-01	4.73e-01	8.02e+00	8.41e+00	1.15e-01	1.51e-01
chr1	171275990	171281186	ENSMUSG00000062729	0.5288	-	Ppox	protein_coding	2.57e-04	3.34e-02	-1.834576	6.34e+00	5.55e+00	6.43e+00	1.02e-02	5.88e-03	1.09e-02	3.17e+00	4.95e+00	1.02e-03	3.84e-03
chr12	116405402	116463731	ENSMUSG00000042029	0.4027	+	Ncapg2	protein_coding	2.60e-04	3.35e-02	1.559872	5.95e+00	5.04e+00	4.39e+00	8.40e-03	4.41e-03	2.75e-03	6.81e+00	6.86e+00	1.53e-02	1.58e-02
chr14	57098600	57104702	ENSMUSG00000046352	0.4880	-	Gjb2	protein_coding	2.63e-04	3.36e-02	2.199071	4.81e+00	3.46e+00	3.32e+00	9.93e-03	3.68e-03	3.31e-03	6.43e+00	6.00e+00	3.12e-02	2.32e-02
chr10	34389981	34397085	ENSMUSG00000039462	0.4319	+	Col10a1	protein_coding	2.68e-04	3.39e-02	-2.437405	4.52e+00	5.93e+00	5.52e+00	9.73e-03	2.65e-02	1.99e-02	3.17e+00	2.81e+00	3.54e-03	2.65e-03
chr12	8771323	8793715	ENSMUSG00000020592	0.5295	+	Sdc1	protein_coding	2.71e-04	3.39e-02	1.272623	1.04e+01	9.59e+00	1.00e+01	1.92e-01	1.11e-01	1.51e-01	1.12e+01	1.14e+01	3.29e-01	4.04e-01
chr1	128331590	128359664	ENSMUSG00000026355	0.4272	-	Mcm6	protein_coding	2.73e-04	3.39e-02	1.218953	9.34e+00	8.76e+00	9.07e+00	1.15e-01	7.67e-02	9.51e-02	1.04e+01	1.02e+01	2.41e-01	2.04e-01
chr6	18845910	18848207	ENSMUSG00000106874	0.4978	-	Gm20186	lincRNA	2.82e-04	3.47e-02	2.428237	4.75e+00	2.00e+00	1.58e+00	1.04e-02	1.20e-03	7.99e-04	4.70e+00	6.58e+00	9.98e-03	3.79e-02
chr11	120729489	120732114	ENSMUSG00000025150	0.5678	-	Cbr2	protein_coding	2.83e-04	3.47e-02	-1.308362	9.48e+00	8.76e+00	9.16e+00	2.55e-01	1.55e-01	2.05e-01	7.54e+00	8.11e+00	6.63e-02	9.89e-02
chr14	20384638	20388910	ENSMUSG00000021811	0.4587	-	Dnajc9	protein_coding	2.86e-04	3.47e-02	1.283881	7.81e+00	7.07e+00	7.81e+00	5.00e-02	2.97e-02	5.00e-02	8.76e+00	9.01e+00	9.65e-02	1.15e-01
chr4	126286793	126314330	ENSMUSG00000056174	0.5298	+	Col8a2	protein_coding	2.89e-04	3.48e-02	-1.599798	6.75e+00	7.35e+00	6.91e+00	2.36e-02	3.57e-02	2.62e-02	5.91e+00	4.70e+00	1.30e-02	5.51e-03
chr17	83215292	83225070	ENSMUSG00000024247	0.5501	+	Pkdcc	protein_coding	3.06e-04	3.66e-02	1.299693	7.43e+00	5.52e+00	6.93e+00	5.17e-02	1.36e-02	3.66e-02	8.31e+00	7.91e+00	9.55e-02	7.26e-02
chr1	89927956	89931179	ENSMUSG00000034486	0.5760	-	Gbx2	protein_coding	3.10e-04	3.68e-02	2.633326	3.46e+00	2.81e+00	2.00e+00	5.22e-03	3.13e-03	1.57e-03	4.46e+00	6.11e+00	1.10e-02	3.55e-02
chr4	10853843	10855436	ENSMUSG00000083220	0.4561	+	Gm12919	processed_pseudogene	3.39e-04	3.99e-02	1.200148	8.60e+00	8.27e+00	7.85e+00	3.10e-01	2.46e-01	1.84e-01	9.58e+00	9.36e+00	6.13e-01	5.23e-01
chr17	33996017	34000333	ENSMUSG00000061232	0.5383	-	H2-K1	protein_coding	3.44e-04	4.02e-02	-1.227328	1.02e+01	1.07e+01	1.04e+01	3.64e-01	5.32e-01	4.20e-01	8.65e+00	9.66e+00	1.24e-01	2.50e-01
chr8	4238740	4247897	ENSMUSG00000002948	0.5441	+	Map2k7	protein_coding	3.47e-04	4.02e-02	1.304044	8.34e+00	7.12e+00	8.22e+00	7.22e-02	3.07e-02	6.64e-02	8.75e+00	9.69e+00	9.60e-02	1.83e-01
chr2	52038009	52056686	ENSMUSG00000053475	0.4098	+	Tnfaip6	protein_coding	3.53e-04	4.05e-02	1.325319	7.00e+00	5.98e+00	6.00e+00	6.46e-02	3.15e-02	3.20e-02	7.94e+00	7.49e+00	1.25e-01	9.10e-02
chr4	148495183	148500460	ENSMUSG00000028989	0.4970	-	Angptl7	protein_coding	3.57e-04	4.07e-02	-1.488286	7.72e+00	7.03e+00	7.35e+00	9.45e-02	5.85e-02	7.29e-02	5.95e+00	5.86e+00	2.74e-02	2.56e-02
chr8	111094630	111137074	ENSMUSG00000033624	0.4352	+	Pdpr	protein_coding	3.63e-04	4.07e-02	2.285402	3.46e+00	2.81e+00	1.00e+00	1.21e-03	7.26e-04	1.21e-04	5.09e+00	4.95e+00	3.99e-03	3.63e-03
chr4	125016585	125055380	ENSMUSG00000028869	0.4583	+	Gnl2	protein_coding	3.64e-04	4.07e-02	-1.635637	6.82e+00	7.69e+00	7.76e+00	1.78e-02	3.25e-02	3.43e-02	6.61e+00	4.09e+00	1.54e-02	2.54e-03
chr9	21288410	21291407	ENSMUSG00000096472	0.5197	-	Cdkn2d	protein_coding	3.65e-04	4.07e-02	1.206235	8.08e+00	7.55e+00	7.71e+00	8.40e-02	5.79e-02	6.47e-02	9.10e+00	8.90e+00	1.70e-01	1.48e-01
chr11	105292643	105351139	ENSMUSG00000020695	0.4958	+	Mrc2	protein_coding	3.68e-04	4.07e-02	-1.527247	7.21e+00	7.72e+00	7.84e+00	1.95e-02	2.79e-02	3.03e-02	6.29e+00	5.86e+00	1.02e-02	7.58e-03
chr10	80261486	80288408	ENSMUSG00000069565	0.5289	+	Dazap1	protein_coding	3.79e-04	4.16e-02	1.216434	9.92e+00	9.12e+00	9.03e+00	1.39e-01	7.98e-02	7.49e-02	1.05e+01	1.07e+01	2.15e-01	2.40e-01
chr17	43801351	44039516	ENSMUSG00000039601	0.4307	+	Rcan2	protein_coding	3.89e-04	4.24e-02	-1.335461	7.85e+00	7.24e+00	8.42e+00	4.64e-02	3.04e-02	6.91e-02	6.44e+00	6.70e+00	1.74e-02	2.09e-02
chr2	85037234	85047109	ENSMUSG00000027067	0.4887	+	Ssrp1	protein_coding	3.98e-04	4.31e-02	1.219657	1.01e+01	9.24e+00	9.18e+00	1.22e-01	6.60e-02	6.34e-02	1.07e+01	1.09e+01	1.79e-01	2.11e-01
chr10	17868612	17948067	ENSMUSG00000039879	0.4040	-	Heca	protein_coding	4.06e-04	4.37e-02	-1.525558	7.22e+00	8.35e+00	7.66e+00	2.18e-02	4.81e-02	2.97e-02	6.79e+00	5.52e+00	1.62e-02	6.64e-03
chr3	90514435	90524581	ENSMUSG00000042312	0.4554	+	S100a13	protein_coding	4.13e-04	4.40e-02	-1.368351	8.61e+00	9.11e+00	8.93e+00	2.91e-01	4.12e-01	3.65e-01	7.89e+00	7.03e+00	1.77e-01	9.73e-02
chr7	88278085	88310888	ENSMUSG00000030560	0.3804	+	Ctsc	protein_coding	4.16e-04	4.40e-02	-2.014950	5.64e+00	7.22e+00	6.52e+00	4.91e-03	1.48e-02	9.12e-03	4.86e+00	4.25e+00	2.81e-03	1.80e-03
chr4	43631935	43651244	ENSMUSG00000028469	0.5023	+	Npr2	protein_coding	4.18e-04	4.40e-02	-1.298321	7.75e+00	8.46e+00	8.71e+00	2.71e-02	4.41e-02	5.26e-02	6.78e+00	7.29e+00	1.37e-02	1.97e-02
chr8	85636588	85700924	ENSMUSG00000036902	0.3788	-	Neto2	protein_coding	4.21e-04	4.40e-02	1.706149	5.04e+00	5.04e+00	4.95e+00	6.16e-03	6.16e-03	5.77e-03	6.73e+00	6.71e+00	2.02e-02	2.00e-02
chr17	35059035	35062095	ENSMUSG00000007039	0.5779	+	Ddah2	protein_coding	4.29e-04	4.45e-02	-1.294597	8.92e+00	1.02e+01	9.52e+00	1.63e-01	3.85e-01	2.47e-01	8.41e+00	8.24e+00	1.14e-01	1.01e-01
chr14	13949012	13961852	ENSMUSG00000053453	0.4211	-	Thoc7	protein_coding	4.34e-04	4.47e-02	1.142599	8.76e+00	7.50e+00	7.78e+00	4.38e-02	1.82e-02	2.21e-02	9.52e+00	8.95e+00	7.43e-02	4.97e-02
chrX	74254687	74261548	ENSMUSG00000001964	0.4656	+	Emd	protein_coding	4.42e-04	4.53e-02	1.262801	1.08e+01	1.02e+01	1.07e+01	2.39e-01	1.63e-01	2.20e-01	1.17e+01	1.20e+01	4.36e-01	5.60e-01
chr6	48833818	48841496	ENSMUSG00000029810	0.5115	-	Tmem176b	protein_coding	4.70e-04	4.78e-02	-1.220079	1.04e+01	1.03e+01	1.02e+01	2.50e-01	2.27e-01	2.12e-01	8.62e+00	9.40e+00	7.23e-02	1.25e-01
chr1	63113078	63158290	ENSMUSG00000084799	0.4292	+	Ino80dos	lincRNA	4.83e-04	4.88e-02	-3.247928	4.25e+00	4.58e+00	3.81e+00	3.60e-03	4.60e-03	2.60e-03	1.58e+00	0.00e+00	4.00e-04	0.00e+00
chr13	5861482	5870394	ENSMUSG00000000078	0.4344	+	Klf6	protein_coding	5.01e-04	5.02e-02	1.137438	9.20e+00	7.48e+00	7.89e+00	6.26e-02	1.89e-02	2.52e-02	9.68e+00	9.35e+00	8.72e-02	6.96e-02
chr9	5345430	5373032	ENSMUSG00000025887	0.3812	+	Casp12	protein_coding	5.16e-04	5.14e-02	-1.549130	6.25e+00	7.06e+00	7.01e+00	9.79e-03	1.72e-02	1.67e-02	5.04e+00	5.46e+00	4.18e-03	5.61e-03
chr13	55445072	55460927	ENSMUSG00000074886	0.5379	+	Grk6	protein_coding	5.22e-04	5.16e-02	1.224882	7.59e+00	6.82e+00	7.22e+00	4.69e-02	2.74e-02	3.62e-02	8.52e+00	8.42e+00	8.95e-02	8.34e-02

Download the DEG result list for Tg197_vs_Tg197_C.
Download the whole result list for Tg197_vs_Tg197_C.

DEG table for the contrast C_221_222_vs_Tg197_C

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast C_221_222_vs_Tg197_C. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_C_221_222_vs_Tg197_C	log2_normalized_counts_GK3R190-C1	log2_normalized_counts_GK3R191-C2	log2_normalized_counts_GK3R192-C3	rpgm_normalized_counts_GK3R190-C1	rpgm_normalized_counts_GK3R191-C2	rpgm_normalized_counts_GK3R192-C3	log2_normalized_counts_GK3R196-Tg197-C1	log2_normalized_counts_GK3R198-Tg197-C3	rpgm_normalized_counts_GK3R196-Tg197-C1	rpgm_normalized_counts_GK3R198-Tg197-C3
chr7	46711998	46715700	ENSMUSG00000040026	0.4807	-	Saa3	protein_coding	6.74e-75	1.01e-70	8.828417	0.00e+00	2.32e+00	3.46e+00	0.00e+00	8.72e-04	2.18e-03	1.07e+01	1.18e+01	3.55e-01	7.68e-01
chr1	83116766	83119167	ENSMUSG00000026166	0.3926	+	Ccl20	protein_coding	5.54e-48	4.13e-44	5.963034	4.86e+00	4.52e+00	3.46e+00	1.22e-02	9.56e-03	4.34e-03	1.02e+01	1.05e+01	5.14e-01	6.23e-01
chr19	34473786	34475135	ENSMUSG00000050370	0.4985	-	Ch25h	protein_coding	8.09e-47	4.03e-43	6.150876	3.70e+00	1.58e+00	3.46e+00	8.32e-03	1.39e-03	6.93e-03	9.13e+00	9.49e+00	3.88e-01	4.97e-01
chr2	164940780	164955850	ENSMUSG00000017737	0.5213	+	Mmp9	protein_coding	1.23e-42	4.61e-39	5.860682	3.00e+00	3.58e+00	1.58e+00	1.49e-03	2.34e-03	4.26e-04	8.95e+00	8.64e+00	1.05e-01	8.45e-02
chr7	4772373	4782857	ENSMUSG00000004371	0.5362	-	Il11	protein_coding	9.84e-29	2.48e-25	4.320926	5.04e+00	4.81e+00	5.55e+00	1.31e-02	1.10e-02	1.88e-02	1.01e+01	8.40e+00	4.50e-01	1.37e-01
chr9	7445822	7455975	ENSMUSG00000043613	0.4079	+	Mmp3	protein_coding	9.96e-29	2.48e-25	4.135709	7.47e+00	6.48e+00	6.43e+00	1.15e-01	5.73e-02	5.53e-02	1.06e+01	1.14e+01	9.84e-01	1.70e+00
chr17	57203970	57228136	ENSMUSG00000024164	0.5201	-	C3	protein_coding	2.33e-26	4.97e-23	4.015795	5.39e+00	5.17e+00	3.32e+00	1.08e-02	9.22e-03	2.37e-03	8.69e+00	9.07e+00	1.09e-01	1.41e-01
chr18	35713086	35722356	ENSMUSG00000073599	0.4990	-	Ecscr	protein_coding	3.22e-23	6.01e-20	3.815155	5.58e+00	4.95e+00	5.04e+00	8.70e-03	5.55e-03	5.92e-03	8.48e+00	9.44e+00	6.59e-02	1.28e-01
chr15	77583819	77596125	ENSMUSG00000050014	0.4661	-	Apol10b	protein_coding	1.10e-19	1.83e-16	5.022368	1.00e+00	2.00e+00	2.58e+00	4.16e-04	1.25e-03	2.08e-03	7.86e+00	4.75e+00	9.65e-02	1.08e-02
chr5	134702593	134747323	ENSMUSG00000029675	0.4978	-	Eln	protein_coding	1.55e-19	2.24e-16	-3.722544	9.90e+00	1.04e+01	1.04e+01	5.71e-02	8.04e-02	8.24e-02	6.36e+00	6.70e+00	4.84e-03	6.16e-03
chr11	82035571	82037453	ENSMUSG00000035385	0.4376	+	Ccl2	protein_coding	1.65e-19	2.24e-16	3.774761	9.92e+00	9.87e+00	1.01e+01	6.33e-01	6.13e-01	7.10e-01	1.36e+01	1.39e+01	7.91e+00	9.96e+00
chr6	30723547	30748465	ENSMUSG00000051855	0.4545	+	Mest	protein_coding	1.98e-19	2.47e-16	-3.857409	1.01e+01	9.92e+00	8.86e+00	1.23e-01	1.10e-01	5.26e-02	5.95e+00	5.75e+00	6.92e-03	6.01e-03
chr9	98422961	98446575	ENSMUSG00000046402	0.4941	+	Rbp1	protein_coding	3.64e-19	4.18e-16	3.420218	5.88e+00	6.00e+00	4.00e+00	3.93e-02	4.27e-02	1.02e-02	8.75e+00	9.13e+00	2.90e-01	3.80e-01
chr5	90786103	90789600	ENSMUSG00000029379	0.4294	+	Cxcl3	protein_coding	1.58e-18	1.68e-15	3.242730	6.19e+00	5.58e+00	5.32e+00	2.29e-02	1.49e-02	1.24e-02	9.26e+00	8.65e+00	1.94e-01	1.28e-01
chr1	79434669	79440120	ENSMUSG00000050711	0.3955	-	Scg2	protein_coding	2.57e-18	2.56e-15	-4.936507	7.73e+00	7.51e+00	8.20e+00	1.22e-01	1.04e-01	1.69e-01	3.17e+00	2.58e+00	4.62e-03	2.89e-03
chr5	104299171	104311469	ENSMUSG00000029306	0.4065	+	Ibsp	protein_coding	4.31e-18	4.03e-15	-6.415037	6.29e+00	7.78e+00	6.43e+00	3.59e-02	1.02e-01	3.96e-02	0.00e+00	1.00e+00	0.00e+00	4.66e-04
chr8	109575128	109579172	ENSMUSG00000031722	0.5125	-	Hp	protein_coding	3.16e-17	2.78e-14	2.953731	6.54e+00	6.46e+00	4.25e+00	3.24e-02	3.07e-02	6.34e-03	9.13e+00	8.89e+00	1.97e-01	1.67e-01
chr2	31470207	31520672	ENSMUSG00000076441	0.5281	+	Ass1	protein_coding	3.49e-17	2.90e-14	3.807355	3.00e+00	3.46e+00	3.46e+00	1.75e-03	2.50e-03	2.50e-03	6.75e+00	7.43e+00	2.67e-02	4.27e-02
chr9	102988712	103096002	ENSMUSG00000032548	0.4822	+	Slco2a1	protein_coding	1.05e-15	8.27e-13	3.318317	5.09e+00	4.17e+00	4.81e+00	2.30e-03	1.19e-03	1.88e-03	7.62e+00	8.39e+00	1.37e-02	2.33e-02
chr17	35552128	35557180	ENSMUSG00000039518	0.5375	+	Cdsn	protein_coding	4.33e-15	3.24e-12	-3.024118	9.44e+00	9.68e+00	1.07e+01	3.20e-01	3.78e-01	7.74e-01	6.38e+00	7.48e+00	3.78e-02	8.20e-02
chr12	55489410	55492647	ENSMUSG00000021025	0.5435	-	Nfkbia	protein_coding	5.89e-15	4.12e-12	2.764807	8.33e+00	8.61e+00	8.52e+00	1.06e-01	1.29e-01	1.21e-01	1.13e+01	1.13e+01	8.10e-01	8.11e-01
chr6	124530345	124542359	ENSMUSG00000038521	0.4617	-	C1s1	protein_coding	6.07e-15	4.12e-12	2.507040	0.00e+00	7.96e+00	1.00e+00	0.00e+00	4.43e-02	1.78e-04	9.88e+00	3.58e+00	1.68e-01	1.96e-03
chr9	45370185	45396159	ENSMUSG00000066705	0.4943	+	Fxyd6	protein_coding	7.11e-15	4.62e-12	-4.597241	7.53e+00	7.43e+00	6.83e+00	3.92e-02	3.66e-02	2.40e-02	3.17e+00	2.00e+00	1.70e-03	6.38e-04
chr1	72824503	72852474	ENSMUSG00000039323	0.4843	+	Igfbp2	protein_coding	1.53e-14	9.55e-12	-3.048094	1.04e+01	1.05e+01	1.11e+01	8.80e-01	9.31e-01	1.44e+00	7.62e+00	7.75e+00	1.24e-01	1.36e-01
chr6	124996694	125003096	ENSMUSG00000030329	0.5627	+	Pianp	protein_coding	1.63e-14	9.76e-12	-3.138102	8.40e+00	7.85e+00	8.63e+00	5.23e-02	3.55e-02	6.13e-02	0.00e+00	6.17e+00	0.00e+00	1.10e-02
chr4	130913125	130936141	ENSMUSG00000028581	0.5309	+	Laptm5	protein_coding	3.89e-14	2.23e-11	3.534922	2.32e+00	3.46e+00	2.58e+00	3.86e-04	9.64e-04	4.82e-04	7.30e+00	3.58e+00	1.51e-02	1.06e-03
chr8	70373558	70382066	ENSMUSG00000031849	0.5643	+	Comp	protein_coding	5.52e-14	3.06e-11	-3.214747	1.25e+01	1.16e+01	1.34e+01	9.53e-01	4.91e-01	1.75e+00	9.18e+00	9.71e+00	9.35e-02	1.36e-01
chr15	54838901	54952892	ENSMUSG00000022425	0.4130	-	Enpp2	protein_coding	8.06e-14	4.30e-11	2.758870	5.32e+00	6.75e+00	5.73e+00	4.89e-03	1.34e-02	6.52e-03	8.21e+00	9.26e+00	3.70e-02	7.65e-02
chr2	66673425	66784914	ENSMUSG00000034810	0.3734	-	Scn7a	protein_coding	1.14e-13	5.88e-11	-5.247928	6.48e+00	6.98e+00	6.13e+00	2.65e-02	3.76e-02	2.08e-02	1.58e+00	1.00e+00	6.02e-04	3.01e-04
chr12	111669361	111672338	ENSMUSG00000001270	0.6192	-	Ckb	protein_coding	1.88e-13	9.37e-11	2.790432	5.91e+00	5.61e+00	5.25e+00	1.13e-02	9.22e-03	7.11e-03	8.76e+00	7.93e+00	8.32e-02	4.67e-02
chr10	19000910	19015657	ENSMUSG00000019850	0.4554	-	Tnfaip3	protein_coding	2.29e-13	1.10e-10	4.990955	0.00e+00	1.58e+00	0.00e+00	0.00e+00	2.93e-04	0.00e+00	5.43e+00	5.98e+00	6.15e-03	9.08e-03
chr2	113746164	113758646	ENSMUSG00000074934	0.4358	-	Grem1	protein_coding	4.27e-13	1.99e-10	3.534922	3.70e+00	2.81e+00	3.70e+00	2.56e-03	1.28e-03	2.56e-03	7.35e+00	6.52e+00	3.46e-02	1.94e-02
chr14	46383520	46390669	ENSMUSG00000021835	0.5305	-	Bmp4	protein_coding	4.82e-13	2.12e-10	-3.047934	8.63e+00	7.75e+00	8.27e+00	9.63e-02	5.23e-02	7.50e-02	5.09e+00	5.32e+00	8.06e-03	9.53e-03
chr5	92209893	92215408	ENSMUSG00000029409	0.4329	-	U90926	protein_coding	4.83e-13	2.12e-10	4.163230	3.32e+00	1.00e+00	2.58e+00	6.11e-03	6.79e-04	3.40e-03	6.83e+00	6.66e+00	7.68e-02	6.79e-02
chr10	68723646	68782650	ENSMUSG00000060044	0.4056	+	Tmem26	protein_coding	6.88e-13	2.94e-10	-3.012859	8.84e+00	9.28e+00	8.60e+00	4.07e-02	5.51e-02	3.44e-02	6.02e+00	5.81e+00	5.70e-03	4.90e-03
chr4	4133531	4138819	ENSMUSG00000045573	0.4386	-	Penk	protein_coding	7.24e-13	3.01e-10	-2.850617	1.12e+01	1.22e+01	1.12e+01	8.58e-01	1.65e+00	8.64e-01	8.58e+00	8.95e+00	1.36e-01	1.75e-01
chr12	112106679	112127559	ENSMUSG00000037686	0.5676	+	Aspg	protein_coding	1.22e-12	4.94e-10	-3.564204	7.85e+00	7.57e+00	7.65e+00	1.72e-02	1.42e-02	1.50e-02	4.09e+00	4.17e+00	1.20e-03	1.28e-03
chr9	65265180	65280605	ENSMUSG00000042254	0.4935	+	Cilp	protein_coding	1.29e-12	5.08e-10	-2.816200	1.06e+01	1.13e+01	1.07e+01	1.42e-01	2.28e-01	1.46e-01	8.09e+00	8.07e+00	2.45e-02	2.41e-02
chr5	90891241	90893115	ENSMUSG00000029380	0.4464	+	Cxcl1	protein_coding	2.74e-12	1.05e-09	2.455956	9.80e+00	9.75e+00	9.80e+00	4.83e-01	4.68e-01	4.82e-01	1.25e+01	1.19e+01	3.21e+00	2.03e+00
chr9	22126727	22135711	ENSMUSG00000001348	0.5233	-	Acp5	protein_coding	3.67e-12	1.37e-09	3.250095	2.81e+00	4.32e+00	3.00e+00	2.15e-03	6.80e-03	2.50e-03	7.43e+00	5.64e+00	6.12e-02	1.75e-02
chr10	57784881	57788450	ENSMUSG00000019874	0.3838	+	Fabp7	protein_coding	3.89e-12	1.42e-09	3.053516	3.70e+00	4.25e+00	3.46e+00	3.99e-03	5.99e-03	3.33e-03	6.64e+00	7.11e+00	3.29e-02	4.56e-02
chr2	128862981	128897034	ENSMUSG00000027386	0.4755	+	Fbln7	protein_coding	5.66e-12	2.01e-09	-3.373880	7.90e+00	7.72e+00	7.43e+00	8.83e-02	7.79e-02	6.34e-02	4.52e+00	4.09e+00	8.16e-03	5.93e-03
chr1	173962568	173982744	ENSMUSG00000026535	0.3715	-	Ifi202b	protein_coding	5.85e-12	2.03e-09	2.835599	0.00e+00	5.70e+00	5.88e+00	0.00e+00	3.43e-02	3.90e-02	8.41e+00	7.58e+00	2.29e-01	1.29e-01
chr10	62071123	62072362	ENSMUSG00000046687	0.5395	+	Gm5424	processed_pseudogene	6.86e-12	2.33e-09	3.058894	3.32e+00	2.81e+00	4.81e+00	7.19e-03	4.80e-03	2.16e-02	6.71e+00	7.18e+00	8.31e-02	1.15e-01
chr11	4257557	4272514	ENSMUSG00000034394	0.5519	+	Lif	protein_coding	1.43e-11	4.75e-09	3.800900	3.32e+00	1.58e+00	3.46e+00	1.58e-03	3.52e-04	1.76e-03	7.11e+00	6.41e+00	2.41e-02	1.48e-02
chr8	56294585	56321043	ENSMUSG00000031613	0.3691	+	Hpgd	protein_coding	3.02e-11	9.80e-09	-2.529209	8.91e+00	9.96e+00	9.52e+00	2.29e-01	4.76e-01	3.50e-01	6.39e+00	7.42e+00	3.97e-02	8.14e-02
chr11	54902453	54910377	ENSMUSG00000018339	0.5380	+	Gpx3	protein_coding	5.20e-11	1.65e-08	-2.517272	1.08e+01	1.07e+01	1.09e+01	8.59e-01	7.85e-01	9.10e-01	7.96e+00	8.55e+00	1.18e-01	1.78e-01
chr1	93235841	93301065	ENSMUSG00000047793	0.4874	+	Sned1	protein_coding	5.94e-11	1.85e-08	-2.502500	1.03e+01	1.06e+01	1.09e+01	1.30e-01	1.55e-01	1.97e-01	7.94e+00	8.28e+00	2.50e-02	3.16e-02
chr18	46713205	46728342	ENSMUSG00000033022	0.4236	-	Cdo1	protein_coding	6.12e-11	1.86e-08	-3.007613	7.51e+00	8.25e+00	8.09e+00	9.15e-02	1.54e-01	1.38e-01	5.13e+00	4.81e+00	1.72e-02	1.37e-02
chr5	39613935	39755475	ENSMUSG00000051022	0.4101	-	Hs3st1	protein_coding	7.39e-11	2.21e-08	3.521600	4.00e+00	3.17e+00	2.81e+00	3.59e-03	1.91e-03	1.44e-03	7.20e+00	6.61e+00	3.49e-02	2.32e-02
chr5	91074622	91093646	ENSMUSG00000029377	0.3961	+	Ereg	protein_coding	7.53e-11	2.21e-08	3.345012	1.58e+00	3.70e+00	3.91e+00	4.21e-04	2.53e-03	2.95e-03	6.81e+00	6.61e+00	2.34e-02	2.04e-02
chr17	45555716	45563169	ENSMUSG00000023947	0.5346	+	Nfkbie	protein_coding	1.37e-10	3.95e-08	3.350497	3.58e+00	2.00e+00	2.00e+00	4.67e-03	1.27e-03	1.27e-03	5.95e+00	6.21e+00	2.59e-02	3.10e-02
chr14	56082166	56085273	ENSMUSG00000022157	0.4569	-	Mcpt8	protein_coding	1.43e-10	4.02e-08	2.494913	6.07e+00	5.93e+00	4.86e+00	1.33e-02	1.21e-02	5.65e-03	8.51e+00	7.81e+00	7.35e-02	4.52e-02
chr9	48591877	48605153	ENSMUSG00000032271	0.4501	-	Nnmt	protein_coding	1.97e-10	5.45e-08	-2.615570	8.55e+00	8.82e+00	7.80e+00	1.36e-01	1.64e-01	8.09e-02	5.67e+00	5.98e+00	1.82e-02	2.26e-02
chr6	22288227	22298522	ENSMUSG00000029671	0.4153	+	Wnt16	protein_coding	2.52e-10	6.85e-08	-2.880701	7.79e+00	8.13e+00	7.59e+00	2.80e-02	3.55e-02	2.43e-02	4.58e+00	5.29e+00	2.91e-03	4.81e-03
chr2	180456245	180474867	ENSMUSG00000038963	0.5335	+	Slco4a1	protein_coding	3.44e-10	9.18e-08	4.402586	1.00e+00	1.58e+00	2.32e+00	3.20e-04	6.40e-04	1.28e-03	6.09e+00	6.19e+00	2.14e-02	2.30e-02
chr11	83525778	83530518	ENSMUSG00000035042	0.4664	-	Ccl5	protein_coding	4.27e-10	1.12e-07	3.584963	1.58e+00	2.81e+00	2.32e+00	7.40e-04	2.22e-03	1.48e-03	5.17e+00	6.39e+00	1.30e-02	3.07e-02
chrX	166523007	166585720	ENSMUSG00000000402	0.4254	-	Egfl6	protein_coding	4.37e-10	1.13e-07	-4.380822	5.67e+00	6.88e+00	6.34e+00	2.38e-02	5.56e-02	3.80e-02	1.00e+00	2.58e+00	4.75e-04	2.38e-03
chr4	150853919	150868892	ENSMUSG00000028967	0.4380	+	Errfi1	protein_coding	4.63e-10	1.17e-07	2.469485	6.15e+00	5.39e+00	5.43e+00	1.80e-02	1.05e-02	1.08e-02	7.98e+00	8.34e+00	6.45e-02	8.30e-02
chr2	122636986	122641191	ENSMUSG00000033213	0.4332	+	AA467197	protein_coding	5.16e-10	1.28e-07	3.487266	2.58e+00	3.32e+00	2.32e+00	2.92e-03	5.25e-03	2.34e-03	5.36e+00	6.86e+00	2.34e-02	6.71e-02
chr9	7848699	7873186	ENSMUSG00000032000	0.4481	-	Birc3	protein_coding	6.07e-10	1.49e-07	2.554843	5.13e+00	5.70e+00	5.09e+00	3.16e-03	4.74e-03	3.07e-03	7.22e+00	8.34e+00	1.38e-02	3.01e-02
chr1	40429570	40465415	ENSMUSG00000026069	0.4155	+	Il1rl1	protein_coding	1.11e-09	2.68e-07	2.075463	9.08e+00	8.64e+00	9.23e+00	6.38e-02	4.71e-02	7.12e-02	1.13e+01	1.07e+01	3.09e-01	2.04e-01
chr17	34856374	34862518	ENSMUSG00000090231	0.5196	-	Cfb	protein_coding	1.14e-09	2.71e-07	2.123187	8.30e+00	8.25e+00	7.83e+00	4.58e-02	4.43e-02	3.30e-02	1.02e+01	1.03e+01	1.77e-01	1.81e-01
chr3	83766321	83774316	ENSMUSG00000027996	0.4816	+	Sfrp2	protein_coding	1.18e-09	2.74e-07	-2.448758	1.19e+01	1.24e+01	1.16e+01	8.05e-01	1.19e+00	6.74e-01	9.64e+00	9.49e+00	1.72e-01	1.54e-01
chr6	82725025	82774454	ENSMUSG00000000628	0.4908	-	Hk2	protein_coding	1.43e-09	3.28e-07	2.033910	8.55e+00	8.29e+00	7.76e+00	7.79e-02	6.52e-02	4.51e-02	1.04e+01	1.01e+01	2.80e-01	2.35e-01
chr17	34856412	34882042	ENSMUSG00000092511	0.4845	-	Gm20547	protein_coding	1.48e-09	3.36e-07	2.111911	6.71e+00	6.78e+00	6.34e+00	8.21e-02	8.61e-02	6.32e-02	8.68e+00	8.79e+00	3.23e-01	3.49e-01
chr13	16011851	16031621	ENSMUSG00000041324	0.4311	+	Inhba	protein_coding	1.60e-09	3.56e-07	2.056359	9.37e+00	9.38e+00	9.55e+00	1.15e-01	1.15e-01	1.30e-01	1.19e+01	1.10e+01	6.44e-01	3.57e-01
chr5	66016549	66173118	ENSMUSG00000070780	0.4485	-	Rbm47	protein_coding	2.15e-09	4.73e-07	4.906891	1.00e+00	0.00e+00	0.00e+00	1.21e-04	0.00e+00	0.00e+00	5.52e+00	5.09e+00	5.47e-03	4.01e-03
chr13	49608046	49624501	ENSMUSG00000021390	0.3622	+	Ogn	protein_coding	3.03e-09	6.46e-07	-2.319741	8.41e+00	8.79e+00	9.07e+00	1.22e-01	1.59e-01	1.93e-01	6.38e+00	6.54e+00	2.96e-02	3.32e-02
chr15	54745702	54754039	ENSMUSG00000037362	0.4183	+	Nov	protein_coding	3.03e-09	6.46e-07	-2.561639	7.98e+00	8.16e+00	8.32e+00	9.05e-02	1.03e-01	1.14e-01	5.73e+00	5.46e+00	1.87e-02	1.54e-02
chr10	88322804	88379080	ENSMUSG00000020057	0.4456	-	Dram1	protein_coding	3.11e-09	6.55e-07	2.109939	7.15e+00	7.83e+00	7.34e+00	1.41e-02	2.27e-02	1.61e-02	9.08e+00	9.95e+00	5.41e-02	9.87e-02
chr1	120190757	120272705	ENSMUSG00000026389	0.4820	-	Steap3	protein_coding	3.44e-09	7.14e-07	-2.694340	7.72e+00	8.29e+00	7.93e+00	3.64e-02	5.40e-02	4.22e-02	5.70e+00	4.75e+00	8.85e-03	4.51e-03
chr11	83291699	83294632	ENSMUSG00000093483	0.4277	+	AA465934	processed_transcript	4.83e-09	9.89e-07	-2.017873	8.87e+00	9.60e+00	9.89e+00	1.86e-01	3.09e-01	3.79e-01	4.52e+00	8.40e+00	8.78e-03	1.35e-01
chr17	13007839	13018119	ENSMUSG00000006818	0.4286	+	Sod2	protein_coding	4.90e-09	9.89e-07	2.040565	8.50e+00	8.54e+00	8.75e+00	8.57e-02	8.86e-02	1.03e-01	1.06e+01	1.07e+01	3.66e-01	3.95e-01
chr7	79821803	79861059	ENSMUSG00000039062	0.5031	-	Anpep	protein_coding	6.25e-09	1.25e-06	-3.249028	6.49e+00	6.88e+00	6.91e+00	2.11e-02	2.78e-02	2.82e-02	3.17e+00	3.81e+00	1.90e-03	3.08e-03
chr8	94172664	94173568	ENSMUSG00000031762	0.5569	+	Mt2	protein_coding	6.34e-09	1.25e-06	2.274405	1.07e+01	1.05e+01	1.07e+01	1.19e+00	1.06e+00	1.18e+00	1.22e+01	1.34e+01	3.39e+00	7.66e+00
chr11	82057823	82062955	ENSMUSG00000020676	0.4282	+	Ccl11	protein_coding	8.78e-09	1.70e-06	5.044394	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	4.58e+00	5.39e+00	1.21e-02	2.16e-02
chr2	80411970	80447625	ENSMUSG00000027004	0.4146	-	Frzb	protein_coding	9.56e-09	1.83e-06	-2.628684	7.45e+00	8.46e+00	6.27e+00	6.58e-02	1.32e-01	2.88e-02	3.70e+00	5.70e+00	4.54e-03	1.93e-02
chr12	27334264	27342574	ENSMUSG00000063632	0.4648	-	Sox11	protein_coding	1.08e-08	2.05e-06	2.036658	6.63e+00	6.87e+00	7.30e+00	1.23e-02	1.46e-02	1.97e-02	9.16e+00	8.81e+00	7.20e-02	5.63e-02
chr11	54054928	54069014	ENSMUSG00000020388	0.5357	-	Pdlim4	protein_coding	1.29e-08	2.41e-06	2.006854	7.64e+00	7.64e+00	7.85e+00	3.78e-02	3.79e-02	4.39e-02	9.48e+00	9.93e+00	1.36e-01	1.86e-01
chr5	90768518	90770063	ENSMUSG00000029372	0.4263	+	Ppbp	protein_coding	1.36e-08	2.49e-06	2.009252	7.36e+00	5.61e+00	5.88e+00	8.55e-02	2.52e-02	3.04e-02	8.66e+00	8.34e+00	2.12e-01	1.70e-01
chr5	30013114	30019981	ENSMUSG00000025746	0.4078	+	Il6	protein_coding	1.37e-08	2.49e-06	3.057450	3.32e+00	4.00e+00	3.81e+00	3.08e-03	5.14e-03	4.45e-03	6.66e+00	6.92e+00	3.43e-02	4.11e-02
chr9	21015985	21028817	ENSMUSG00000037405	0.5061	+	Icam1	protein_coding	1.59e-08	2.87e-06	2.428237	4.70e+00	5.75e+00	4.46e+00	7.41e-03	1.57e-02	6.23e-03	6.71e+00	8.03e+00	3.08e-02	7.71e-02
chr17	26505590	26508519	ENSMUSG00000024190	0.5334	-	Dusp1	protein_coding	1.88e-08	3.34e-06	2.100801	6.07e+00	6.02e+00	6.58e+00	3.03e-02	2.94e-02	4.36e-02	8.21e+00	8.48e+00	1.36e-01	1.63e-01
chr1	88673125	88702221	ENSMUSG00000049866	0.4750	-	Arl4c	protein_coding	2.24e-08	3.90e-06	1.898148	8.75e+00	8.61e+00	8.77e+00	5.85e-02	5.30e-02	5.92e-02	1.08e+01	1.04e+01	2.38e-01	1.87e-01
chr8	88521354	88594884	ENSMUSG00000031661	0.5189	+	Nkd1	protein_coding	2.24e-08	3.90e-06	-2.576349	6.51e+00	7.24e+00	8.02e+00	2.26e-02	3.77e-02	6.48e-02	3.91e+00	5.36e+00	3.51e-03	1.00e-02
chr2	91082390	91115756	ENSMUSG00000002111	0.4989	+	Spi1	protein_coding	2.36e-08	4.05e-06	3.564785	1.00e+00	1.00e+00	2.32e+00	1.86e-04	1.86e-04	7.45e-04	5.36e+00	4.91e+00	7.45e-03	5.40e-03
chr7	25626654	25635100	ENSMUSG00000059479	0.5666	+	B3gnt8	protein_coding	3.03e-08	5.13e-06	-4.938599	5.21e+00	4.52e+00	5.00e+00	4.52e-03	2.76e-03	3.89e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr6	127887589	127953977	ENSMUSG00000030351	0.4980	+	Tspan11	protein_coding	3.05e-08	5.13e-06	2.853451	4.09e+00	4.09e+00	3.32e+00	2.41e-03	2.41e-03	1.36e-03	6.75e+00	6.70e+00	1.61e-02	1.55e-02
chr2	30889471	30929863	ENSMUSG00000050737	0.4993	-	Ptges	protein_coding	3.38e-08	5.61e-06	1.953800	7.44e+00	7.57e+00	7.80e+00	3.97e-02	4.34e-02	5.10e-02	9.31e+00	9.78e+00	1.46e-01	2.02e-01
chr13	49544443	49567565	ENSMUSG00000021388	0.3693	+	Aspn	protein_coding	3.46e-08	5.68e-06	-2.153403	9.08e+00	9.90e+00	9.14e+00	2.47e-01	4.37e-01	2.59e-01	7.48e+00	7.03e+00	8.10e-02	5.95e-02
chr2	11705290	11734317	ENSMUSG00000023206	0.4426	+	Il15ra	protein_coding	4.26e-08	6.92e-06	2.390146	4.91e+00	4.32e+00	5.49e+00	4.65e-03	3.05e-03	7.05e-03	7.50e+00	7.24e+00	2.89e-02	2.40e-02
chr1	131254343	131279606	ENSMUSG00000042349	0.5100	-	Ikbke	protein_coding	4.94e-08	7.94e-06	2.078162	6.57e+00	6.39e+00	5.88e+00	1.14e-02	1.01e-02	7.06e-03	7.80e+00	8.80e+00	2.70e-02	5.43e-02
chr2	126320973	126500674	ENSMUSG00000060131	0.4164	-	Atp8b4	protein_coding	5.50e-08	8.74e-06	3.092304	2.32e+00	3.70e+00	4.09e+00	3.33e-04	1.00e-03	1.33e-03	6.44e+00	6.81e+00	7.16e-03	9.25e-03
chr14	56365068	56388550	ENSMUSG00000022229	0.4575	+	Atp12a	protein_coding	5.88e-08	9.25e-06	-2.596207	7.53e+00	7.49e+00	8.12e+00	5.88e-02	5.72e-02	8.88e-02	6.00e+00	2.81e+00	2.01e-02	1.92e-03
chr19	6418731	6544169	ENSMUSG00000033768	0.5368	+	Nrxn2	protein_coding	7.48e-08	1.16e-05	-3.138654	6.61e+00	6.54e+00	5.91e+00	8.28e-03	7.85e-03	5.03e-03	3.00e+00	3.46e+00	5.97e-04	8.53e-04
chr15	98663421	98677461	ENSMUSG00000054855	0.4841	-	Rnd1	protein_coding	7.61e-08	1.17e-05	2.068172	5.88e+00	5.58e+00	6.30e+00	1.01e-02	8.18e-03	1.36e-02	7.62e+00	8.34e+00	3.41e-02	5.61e-02
chr13	92751590	92794818	ENSMUSG00000021702	0.4601	-	Thbs4	protein_coding	8.30e-08	1.27e-05	-2.164348	1.22e+01	1.23e+01	1.25e+01	1.72e+00	1.95e+00	2.14e+00	9.95e+00	1.04e+01	3.71e-01	4.93e-01
chr1	85576899	85598817	ENSMUSG00000070034	0.4657	-	Sp110	protein_coding	1.43e-07	2.16e-05	2.672425	4.86e+00	4.25e+00	3.00e+00	3.06e-03	1.97e-03	7.65e-04	4.46e+00	7.75e+00	2.30e-03	2.35e-02
chr10	115450311	115587780	ENSMUSG00000020140	0.4222	-	Lgr5	protein_coding	1.54e-07	2.29e-05	-2.729734	7.40e+00	6.95e+00	6.71e+00	1.82e-02	1.34e-02	1.13e-02	3.58e+00	4.81e+00	1.19e-03	2.93e-03
chr2	126034658	126091185	ENSMUSG00000027208	0.4000	+	Fgf7	protein_coding	1.55e-07	2.29e-05	1.854363	6.91e+00	6.95e+00	6.83e+00	2.88e-02	2.98e-02	2.74e-02	8.85e+00	8.65e+00	1.11e-01	9.74e-02
chr2	164354070	164389095	ENSMUSG00000017002	0.4508	-	Slpi	protein_coding	1.69e-07	2.48e-05	1.820676	8.87e+00	8.75e+00	8.01e+00	1.24e-01	1.15e-01	6.86e-02	9.92e+00	1.08e+01	2.59e-01	4.66e-01
chr16	23449417	23520815	ENSMUSG00000022887	0.4516	-	Masp1	protein_coding	1.92e-07	2.79e-05	1.788394	7.79e+00	6.93e+00	7.74e+00	2.16e-02	1.18e-02	2.08e-02	9.46e+00	9.18e+00	6.88e-02	5.66e-02
chr1	150100031	150108227	ENSMUSG00000032487	0.3816	+	Ptgs2	protein_coding	2.04e-07	2.92e-05	1.818561	7.21e+00	6.81e+00	7.63e+00	2.97e-02	2.24e-02	3.98e-02	9.24e+00	8.89e+00	1.22e-01	9.56e-02
chr12	51593341	51605771	ENSMUSG00000020953	0.4330	+	Coch	protein_coding	2.05e-07	2.92e-05	-2.948217	6.66e+00	6.29e+00	6.93e+00	3.05e-02	2.35e-02	3.69e-02	4.17e+00	3.00e+00	5.18e-03	2.13e-03
chr4	11958184	11966452	ENSMUSG00000049225	0.4005	-	Pdp1	protein_coding	2.25e-07	3.17e-05	-1.985050	8.12e+00	9.01e+00	8.48e+00	7.61e-02	1.41e-01	9.81e-02	6.19e+00	6.92e+00	1.98e-02	3.30e-02
chrX	166238911	166388988	ENSMUSG00000031342	0.4179	+	Gpm6b	protein_coding	2.86e-07	3.99e-05	1.710652	8.79e+00	8.81e+00	7.94e+00	3.40e-02	3.46e-02	1.88e-02	1.04e+01	1.02e+01	1.01e-01	9.01e-02
chr5	110544355	110621380	ENSMUSG00000033316	0.4906	+	Galnt9	protein_coding	3.06e-07	4.23e-05	-4.736966	4.39e+00	6.13e+00	4.86e+00	4.64e-03	1.60e-02	6.49e-03	1.00e+00	0.00e+00	2.32e-04	0.00e+00
chr5	3341485	3531008	ENSMUSG00000040274	0.4337	+	Cdk6	protein_coding	3.14e-07	4.30e-05	1.801510	6.71e+00	6.69e+00	6.78e+00	6.83e-03	6.69e-03	7.15e-03	8.66e+00	8.39e+00	2.64e-02	2.19e-02
chr2	133552159	133562885	ENSMUSG00000027358	0.4582	+	Bmp2	protein_coding	3.70e-07	5.03e-05	3.266787	1.58e+00	2.81e+00	1.00e+00	8.26e-04	2.48e-03	4.13e-04	5.25e+00	5.29e+00	1.53e-02	1.57e-02
chr3	116249654	116253503	ENSMUSG00000068696	0.5247	-	Gpr88	protein_coding	3.85e-07	5.18e-05	-2.862121	6.34e+00	7.07e+00	7.07e+00	1.79e-02	2.98e-02	2.98e-02	4.95e+00	0.00e+00	6.72e-03	0.00e+00
chr7	75769038	75782099	ENSMUSG00000097415	0.4715	-	AU020206	lincRNA	3.97e-07	5.29e-05	1.880628	7.00e+00	6.02e+00	5.95e+00	5.08e-02	2.56e-02	2.44e-02	8.16e+00	8.41e+00	1.14e-01	1.35e-01
chr9	110722085	110747145	ENSMUSG00000032492	0.5504	-	Pth1r	protein_coding	4.08e-07	5.40e-05	-2.023723	8.76e+00	8.69e+00	8.32e+00	1.10e-01	1.04e-01	8.06e-02	6.87e+00	6.21e+00	2.94e-02	1.85e-02
chr1	143999338	144004161	ENSMUSG00000026360	0.4362	-	Rgs2	protein_coding	4.56e-07	5.98e-05	1.834879	6.57e+00	6.44e+00	6.41e+00	1.44e-02	1.31e-02	1.28e-02	8.90e+00	7.29e+00	7.30e-02	2.37e-02
chr4	63214004	63334991	ENSMUSG00000045672	0.5157	+	Col27a1	protein_coding	4.79e-07	6.22e-05	-1.888771	8.51e+00	9.27e+00	9.32e+00	1.59e-02	2.70e-02	2.79e-02	7.06e+00	7.31e+00	5.77e-03	6.90e-03
chr7	31051678	31057199	ENSMUSG00000036570	0.5540	-	Fxyd1	protein_coding	5.42e-07	6.98e-05	-3.081794	6.32e+00	6.32e+00	6.55e+00	1.88e-02	1.88e-02	2.21e-02	3.32e+00	3.32e+00	2.14e-03	2.14e-03
chr4	126286793	126314330	ENSMUSG00000056174	0.5298	+	Col8a2	protein_coding	5.57e-07	7.12e-05	-2.200661	7.69e+00	7.53e+00	7.65e+00	4.54e-02	4.06e-02	4.41e-02	5.91e+00	4.70e+00	1.30e-02	5.51e-03
chr12	104247905	104253669	ENSMUSG00000041449	0.4772	+	Serpina3h	transcribed_unprocessed_pseudogene	5.74e-07	7.21e-05	1.977280	2.32e+00	6.21e+00	6.48e+00	1.60e-03	2.92e-02	3.52e-02	7.52e+00	8.01e+00	7.27e-02	1.03e-01
chr8	94772009	94782427	ENSMUSG00000031778	0.5268	+	Cx3cl1	protein_coding	5.74e-07	7.21e-05	1.811543	7.00e+00	6.64e+00	6.86e+00	1.31e-02	1.02e-02	1.18e-02	8.55e+00	8.75e+00	3.83e-02	4.42e-02
chr14	57098600	57104702	ENSMUSG00000046352	0.4880	-	Gjb2	protein_coding	5.93e-07	7.39e-05	3.113341	3.58e+00	3.00e+00	2.58e+00	4.04e-03	2.57e-03	1.84e-03	6.43e+00	6.00e+00	3.12e-02	2.32e-02
chr13	52729615	52757205	ENSMUSG00000113737	0.4613	-	BB123696	lincRNA	6.68e-07	8.24e-05	-4.984893	4.17e+00	5.73e+00	4.58e+00	6.79e-03	2.08e-02	9.19e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr10	75589340	75617200	ENSMUSG00000006344	0.4745	+	Ggt5	protein_coding	6.87e-07	8.39e-05	-2.100264	7.43e+00	8.02e+00	7.07e+00	1.57e-02	2.36e-02	1.21e-02	4.39e+00	6.07e+00	1.83e-03	6.03e-03
chr10	75636706	75644008	ENSMUSG00000006342	0.5626	-	Susd2	protein_coding	6.90e-07	8.39e-05	-2.947533	5.52e+00	6.63e+00	6.61e+00	2.38e-02	5.18e-02	5.13e-02	3.17e+00	3.58e+00	4.23e-03	5.82e-03
chr2	127336159	127338376	ENSMUSG00000027368	0.5762	+	Dusp2	protein_coding	7.75e-07	9.33e-05	2.954196	3.46e+00	3.17e+00	2.00e+00	3.24e-03	2.59e-03	9.73e-04	6.39e+00	5.32e+00	2.69e-02	1.27e-02
chr1	134182176	134190181	ENSMUSG00000064246	0.5034	+	Chil1	protein_coding	8.48e-07	1.01e-04	2.353292	5.61e+00	4.17e+00	4.58e+00	1.43e-02	5.06e-03	6.85e-03	6.60e+00	7.73e+00	2.86e-02	6.31e-02
chr2	27021363	27027998	ENSMUSG00000036067	0.5582	-	Slc2a6	protein_coding	8.56e-07	1.01e-04	4.285402	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	3.70e+00	4.70e+00	2.79e-03	5.81e-03
chr3	142493978	142522344	ENSMUSG00000105504	0.4252	+	Gbp5	protein_coding	9.62e-07	1.13e-04	3.977280	0.00e+00	0.00e+00	1.00e+00	0.00e+00	0.00e+00	1.55e-04	3.17e+00	5.04e+00	1.24e-03	4.94e-03
chr9	109847379	109849617	ENSMUSG00000038357	0.5257	-	Camp	protein_coding	9.65e-07	1.13e-04	3.149747	1.58e+00	2.00e+00	2.32e+00	1.53e-03	2.30e-03	3.06e-03	5.00e+00	5.29e+00	2.37e-02	2.91e-02
chr10	76253853	76261159	ENSMUSG00000033208	0.4706	+	S100b	protein_coding	9.98e-07	1.16e-04	-3.513070	5.13e+00	5.81e+00	5.52e+00	1.45e-02	2.35e-02	1.92e-02	2.81e+00	0.00e+00	2.56e-03	0.00e+00
chr10	127514967	127517154	ENSMUSG00000040280	0.5672	+	Ndufa4l2	protein_coding	1.02e-06	1.18e-04	1.808073	6.99e+00	8.12e+00	7.40e+00	6.61e-02	1.45e-01	8.81e-02	8.39e+00	9.97e+00	1.76e-01	5.26e-01
chr10	41809935	41908424	ENSMUSG00000038332	0.4225	+	Sesn1	protein_coding	1.10e-06	1.25e-04	-2.731982	6.77e+00	7.02e+00	5.64e+00	3.03e-02	3.62e-02	1.37e-02	3.32e+00	4.25e+00	2.52e-03	5.04e-03
chr7	111471661	111779977	ENSMUSG00000038296	0.4605	-	Galnt18	protein_coding	1.12e-06	1.27e-04	2.057815	4.75e+00	5.43e+00	5.21e+00	1.70e-02	2.75e-02	2.36e-02	7.25e+00	7.18e+00	9.89e-02	9.43e-02
chr7	65861734	66050386	ENSMUSG00000030513	0.4727	+	Pcsk6	protein_coding	1.32e-06	1.47e-04	-1.910448	8.29e+00	7.69e+00	8.95e+00	4.90e-02	3.21e-02	7.73e-02	6.73e+00	6.21e+00	1.64e-02	1.14e-02
chr5	17574281	17730268	ENSMUSG00000028780	0.3748	+	Sema3c	protein_coding	1.32e-06	1.47e-04	1.969106	5.67e+00	5.81e+00	6.13e+00	4.15e-03	4.56e-03	5.72e-03	7.63e+00	8.04e+00	1.63e-02	2.18e-02
chr7	142575529	142578143	ENSMUSG00000000031	0.5583	-	H19	lincRNA	1.36e-06	1.51e-04	-2.169925	7.91e+00	7.37e+00	6.32e+00	6.22e-02	4.25e-02	2.05e-02	5.21e+00	5.13e+00	9.33e-03	8.81e-03
chr4	16122733	16163647	ENSMUSG00000041135	0.4007	-	Ripk2	protein_coding	1.81e-06	1.98e-04	1.709814	7.18e+00	6.61e+00	6.79e+00	2.10e-02	1.41e-02	1.60e-02	8.44e+00	8.73e+00	5.04e-02	6.18e-02
chr3	137621612	137628333	ENSMUSG00000046818	0.4643	+	Ddit4l	protein_coding	1.88e-06	2.06e-04	-1.797920	9.01e+00	1.02e+01	9.12e+00	9.17e-02	2.08e-01	9.88e-02	7.69e+00	7.81e+00	3.66e-02	3.96e-02
chr10	75923222	75936496	ENSMUSG00000000901	0.5354	-	Mmp11	protein_coding	2.11e-06	2.28e-04	-1.980891	7.71e+00	8.10e+00	7.58e+00	4.63e-02	6.05e-02	4.21e-02	4.17e+00	6.58e+00	3.77e-03	2.11e-02
chr5	90759360	90761624	ENSMUSG00000029371	0.4190	+	Cxcl5	protein_coding	2.24e-06	2.41e-04	1.807857	1.05e+01	1.08e+01	1.07e+01	6.22e-01	7.61e-01	7.02e-01	1.21e+01	1.28e+01	1.81e+00	3.06e+00
chr13	32842092	32851185	ENSMUSG00000044734	0.4201	-	Serpinb1a	protein_coding	2.30e-06	2.45e-04	-2.726982	6.92e+00	6.74e+00	5.91e+00	2.09e-02	1.85e-02	1.03e-02	4.39e+00	3.00e+00	3.49e-03	1.22e-03
chr13	83504034	83667080	ENSMUSG00000005583	0.3750	+	Mef2c	protein_coding	2.33e-06	2.47e-04	-3.464281	5.91e+00	5.70e+00	5.21e+00	3.16e-03	2.73e-03	1.93e-03	1.58e+00	2.58e+00	1.07e-04	2.67e-04
chr7	73939119	74013690	ENSMUSG00000025789	0.4592	-	St8sia2	protein_coding	2.38e-06	2.51e-04	-3.000000	6.02e+00	6.44e+00	6.25e+00	9.75e-03	1.31e-02	1.14e-02	3.58e+00	2.81e+00	1.68e-03	9.14e-04
chr2	131050591	131063814	ENSMUSG00000027318	0.5470	-	Adam33	protein_coding	2.57e-06	2.67e-04	-3.925999	5.36e+00	5.49e+00	4.81e+00	4.46e-03	4.91e-03	3.01e-03	1.58e+00	1.00e+00	2.23e-04	1.12e-04
chr19	38481109	38785030	ENSMUSG00000024998	0.4300	+	Plce1	protein_coding	2.58e-06	2.67e-04	-2.339002	7.37e+00	7.02e+00	7.02e+00	1.92e-02	1.51e-02	1.51e-02	5.25e+00	4.17e+00	4.34e-03	1.99e-03
chr11	75531694	75577575	ENSMUSG00000038178	0.5040	+	Slc43a2	protein_coding	2.62e-06	2.70e-04	1.787384	6.74e+00	6.00e+00	6.09e+00	8.32e-03	4.95e-03	5.26e-03	7.83e+00	8.33e+00	1.78e-02	2.52e-02
chr11	3330401	3342971	ENSMUSG00000034614	0.5046	+	Pik3ip1	protein_coding	2.67e-06	2.73e-04	-2.027481	7.29e+00	8.10e+00	7.68e+00	2.81e-02	4.97e-02	3.70e-02	5.73e+00	5.67e+00	9.43e-03	9.06e-03
chr8	105373274	105382862	ENSMUSG00000014782	0.5522	+	Plekhg4	protein_coding	3.01e-06	3.06e-04	-2.105855	7.34e+00	7.85e+00	7.03e+00	8.79e-03	1.25e-02	7.10e-03	5.43e+00	5.25e+00	2.29e-03	2.02e-03
chr3	83836272	83841767	ENSMUSG00000027995	0.4760	-	Tlr2	protein_coding	3.27e-06	3.30e-04	2.493815	3.32e+00	4.00e+00	4.52e+00	6.43e-03	1.07e-02	1.57e-02	6.00e+00	6.91e+00	4.50e-02	8.51e-02
chr13	34126748	34130466	ENSMUSG00000045136	0.5061	-	Tubb2b	protein_coding	3.38e-06	3.39e-04	1.514836	9.89e+00	1.01e+01	9.08e+00	2.93e-01	3.46e-01	1.67e-01	1.17e+01	1.07e+01	1.01e+00	5.28e-01
chr11	82045712	82047525	ENSMUSG00000035373	0.4311	+	Ccl7	protein_coding	3.45e-06	3.43e-04	1.683585	1.07e+01	1.06e+01	1.04e+01	9.67e-01	9.34e-01	7.84e-01	1.21e+01	1.24e+01	2.62e+00	3.13e+00
chr17	34197721	34201454	ENSMUSG00000024338	0.5319	+	Psmb8	protein_coding	3.47e-06	3.43e-04	1.688743	6.44e+00	6.11e+00	4.64e+00	3.20e-02	2.53e-02	8.92e-03	7.68e+00	7.52e+00	7.58e-02	6.80e-02
chr4	101419277	101466995	ENSMUSG00000028527	0.4646	+	Ak4	protein_coding	3.49e-06	3.43e-04	1.609961	8.32e+00	8.09e+00	8.46e+00	4.49e-02	3.84e-02	4.96e-02	9.82e+00	9.99e+00	1.27e-01	1.44e-01
chr3	103722222	103738001	ENSMUSG00000027848	0.4913	-	Olfml3	protein_coding	3.61e-06	3.48e-04	-1.804121	9.23e+00	9.10e+00	9.03e+00	8.98e-02	8.20e-02	7.78e-02	7.68e+00	6.83e+00	3.05e-02	1.69e-02
chr17	43801351	44039516	ENSMUSG00000039601	0.4307	+	Rcan2	protein_coding	3.62e-06	3.48e-04	-1.787435	8.16e+00	8.61e+00	8.29e+00	5.80e-02	7.89e-02	6.31e-02	6.44e+00	6.70e+00	1.74e-02	2.09e-02
chr9	49502136	49798925	ENSMUSG00000039542	0.4302	-	Ncam1	protein_coding	3.64e-06	3.48e-04	1.574402	7.95e+00	7.33e+00	7.70e+00	2.36e-02	1.53e-02	1.98e-02	9.40e+00	9.10e+00	6.44e-02	5.24e-02
chr13	94057796	94195409	ENSMUSG00000045312	0.4660	+	Lhfpl2	protein_coding	3.65e-06	3.48e-04	1.652318	7.25e+00	7.61e+00	7.62e+00	1.79e-02	2.30e-02	2.32e-02	8.95e+00	9.33e+00	5.86e-02	7.64e-02
chr12	90724552	90738438	ENSMUSG00000007682	0.4209	-	Dio2	protein_coding	3.66e-06	3.48e-04	2.343408	4.91e+00	4.17e+00	3.58e+00	4.75e-03	2.78e-03	1.80e-03	7.18e+00	5.86e+00	2.36e-02	9.33e-03
chr19	3896050	3907133	ENSMUSG00000001750	0.5389	-	Tcirg1	protein_coding	4.11e-06	3.89e-04	1.636859	7.79e+00	7.60e+00	7.42e+00	1.34e-02	1.17e-02	1.03e-02	8.86e+00	9.56e+00	2.80e-02	4.54e-02
chr2	152931898	152933208	ENSMUSG00000074676	0.5919	-	Foxs1	protein_coding	4.37e-06	4.11e-04	2.269954	4.17e+00	4.25e+00	4.81e+00	1.37e-02	1.45e-02	2.17e-02	5.91e+00	7.22e+00	4.75e-02	1.19e-01
chr4	108014791	108096445	ENSMUSG00000028600	0.4651	-	Podn	protein_coding	4.55e-06	4.25e-04	-1.942515	7.40e+00	8.20e+00	8.10e+00	3.47e-02	6.07e-02	5.64e-02	6.11e+00	5.88e+00	1.40e-02	1.20e-02

Download the DEG result list for C_221_222_vs_Tg197_C.
Download the whole result list for C_221_222_vs_Tg197_C.

Download the raw read counts table for the experiment.
Download the normalized read counts table for the experiment.

References

Statham, A.L., Strbenac, D., Coolen, M.W., Stirzaker, C., Clark, S.J., Robinson, M.D. (2010). Repitools: an R package for the analysis of enrichment-based epigenomic data. Bioinformatics 26(13), 1662-1663.
Anders, S., and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biol 11, R106.
Planet, E., Attolini, C.S., Reina, O., Flores, O., and Rossell, D. (2012). htSeqTools: high-throughput sequencing quality control, processing and visualization in R. Bioinformatics 28, 589-590.
Tarazona, S., Garcia-Alcalde, F., Dopazo, J., Ferrer, A., and Conesa, A. (2011). Differential expression in RNA-seq: a matter of depth. Genome Res 21, 2213-2223.
Risso, D., Schwartz, K., Sherlock, G., and Dudoit, S. (2011). GC-content normalization for RNA-Seq data. BMC Bioinformatics 12, 480.
Benjamini, Y., and Hochberg, Y. (1995). Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society Series B (Methodological) 57, 289-300.