#!/bin/bash

echo ""
echo "Quality control of fastq files using FastQC has been started."
echo "--------------------------------------------------------------------------------"

for i in *.fastq
do 

    #print the file that is currently processed
    echo "$i is currently processed..."  

    #run fastqc
    /home/user/Downloads/bioinformatics_tools/fastqc_v0.11.8/FastQC/fastqc $i
    echo "--------------------------------------------------------------------------------"
done

echo "Operation has been completed!"
echo ""