#!/bin/bash
echo ""
echo "================================================================================"
echo "           _       ______  _     _            _   _  _____   ______  _____"
echo "    /\    | |     |  ____|\ \   / /    /\    | \ | ||  __ \ |  ____||  __ \ "       
echo "   /  \   | |     | |__    \ \_/ /    /  \   |  \| || |  | || |__   | |__) |"
echo "  / /\ \  | |     |  __|    | _ |    / /\ \  |     || |  | ||  __|  |  _  /"
echo " / ____ \ | |____ | |____  / / \ \  / ____ \ | |\  || |__| || |____ | | \ \ "
echo "/_/    \_\|______||______|/_/   \_\/_/    \_\|_| \_|\_____/ |______||_|  \_\ "
echo "	       ______  _       ______  _      _  _  _   _  _______ "
echo "	      |  ____|| |     |  ____|| \    / || || \ | |/  _____|"         
echo "	      | |__   | |     | |__   |  \  /  || ||  \| || |  ___"	    	
echo "	      |  __|  | |     |  __|  |   \/   || ||     || | |_  |" 	     
echo "	      | |     | |____ | |____ | |\  /| || || |\  || |___| |"
echo "	      |_|     |______||______||_| \/ |_||_||_| \_|\_______|"
echo "                     ____       _____     _____       ______"
echo "                    |  _ \     / ____|   |  __ \     /  ____\ "
echo "                    | |_) |   | (___     | |__) |   |  /"
echo "                    |  _ <     \___ \    |  _  /    | (     "
echo "                    | |_) | _  ____) | _ | | \ \  _ |  \____  _"
echo "                    |____/ |_||_____/ |_||_|  \_\|_| \______/|_|"    
echo $'\n'
echo "Pipeline for Quality control, ALignment and Gene expression estimation (v.1.0)"
echo ""
echo "================================================================================"

bash alignment_sorting_script.sh
bash quality_control_script.sh
bash feature_count_script.sh
bash Organize_files_in_folders.sh