# electronic Ligand Builder and Optimisation Workbench (eLBOW)
#   - a module of PHENIX version dev-svn-
#   - file written: Fri May  1 10:37:04 2020
#   Inital geometry file: a 93 line input string
#   Ligand name: [3-[(E)-2-(4-hydroxyphenyl)ethenyl]-5-oxidanyl-phenyl] hydrogen sulfate
#   Quantum optimisation: True
#   Method: PBEh-3c
#   Random seed: 3628800
#   SMILES string: Oc1ccc(cc1)/C=C/c2cc(O)cc(O[S](O)(=O)=O)c2
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
_chem_comp.initial_date
_chem_comp.modified_date
_chem_comp.source
 R3S  R3S  '[3-[(E)-2-(4-hydroxyphenyl)ethenyl]-5-oxidanyl-phenyl] hydrogen sulfate'  ligand  32  21  .  2021-08-23  2021-08-23  
;
Directly from eLBOW using geometry from QM method PBEh-3c with CPCM solvent model
Validated by Mogul as OK
;

data_comp_R3S
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.charge
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 R3S  C01   C  C1     0  -0.326  -6.0259  -0.6076  -0.3577
 R3S  C02   C  C1     0  -0.300  -4.7204  -1.0657  -0.3524
 R3S  C03   C  C      0   0.147  -3.6504  -0.2456   0.0200
 R3S  C04   C  C1     0  -0.319  -3.9503   1.0678   0.3962
 R3S  C05   C  C1     0  -0.359  -5.2493   1.5395   0.3973
 R3S  C06   C  C      0   0.346  -6.3011   0.7049   0.0175
 R3S  C07   C  C1     0  -0.302  -2.2973  -0.7917   0.0027
 R3S  C08   C  C1     0  -0.322  -1.1653  -0.1243   0.2668
 R3S  C09   C  CR6    0   0.195   0.1887  -0.6752   0.2562
 R3S  C10   C  CR16   0  -0.502   0.4649  -2.0082  -0.0652
 R3S  C11   C  CR6    0   0.408   1.7711  -2.4762  -0.0592
 R3S  C12   C  CR16   0  -0.422   2.8276  -1.6248   0.2642
 R3S  C13   C  CR6    0   0.376   2.5471  -0.3088   0.5899
 R3S  C14   C  CR16   0  -0.415   1.2462   0.1754   0.5776
 R3S  O15   O  OC2    0  -0.637   3.5643   0.5213   0.9744
 R3S  O16   O  OH1    0  -0.635   2.0813  -3.7523  -0.3621
 R3S  O17   O  OH1    0  -0.628  -7.5829   1.1141  -0.0011
 R3S  S18   S  S      0   1.557   4.3700   1.3692  -0.2299
 R3S  O19   O  OS     0  -0.719   5.0421   0.3448  -1.0252
 R3S  O20   O  OS    -1  -0.719   3.3212   2.0918  -0.9443
 R3S  O21   O  OS     0  -0.721   5.2480   2.1923   0.5927
 R3S  H10   H  HCR6   0   0.267  -0.3382  -2.6910  -0.3180
 R3S  H01   H  H      0   0.265  -6.8350  -1.2651  -0.6512
 R3S  H02   H  H      0   0.256  -4.5260  -2.0906  -0.6458
 R3S  H12   H  HCR6   0   0.271   3.8446  -1.9946   0.2812
 R3S  H04   H  H      0   0.257  -3.1623   1.7453   0.6999
 R3S  H14   H  HCR6   0   0.255   1.0569   1.2101   0.8324
 R3S  H05   H  H      0   0.274  -5.4473   2.5618   0.6991
 R3S  HO16  H  HOH1   0   0.475   1.2819  -4.2533  -0.5588
 R3S  H07   H  H      0   0.251  -2.2416  -1.8457  -0.2527
 R3S  HO17  H  HOH1   0   0.476  -7.6486   2.0319   0.2858
 R3S  H08   H  H      0   0.250  -1.2187   0.9308   0.5163

loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
_chem_comp_bond.value_dist_neutron
 R3S  C02   C01   aromatic  1.384  0.020  1.384
 R3S  C01   H01   single    0.930  0.020  1.080
 R3S  C01   C06   aromatic  1.393  0.020  1.393
 R3S  C03   C02   aromatic  1.399  0.020  1.399
 R3S  H02   C02   single    0.930  0.020  1.080
 R3S  C07   C03   single    1.459  0.020  1.459
 R3S  C03   C04   aromatic  1.399  0.020  1.399
 R3S  H04   C04   single    0.930  0.020  1.080
 R3S  C04   C05   aromatic  1.382  0.020  1.382
 R3S  C05   H05   single    0.930  0.020  1.080
 R3S  C05   C06   aromatic  1.395  0.020  1.395
 R3S  C06   O17   single    1.346  0.020  1.346
 R3S  C08   C07   double    1.340  0.020  1.340
 R3S  H07   C07   single    0.930  0.020  1.080
 R3S  C09   C08   single    1.462  0.020  1.462
 R3S  C08   H08   single    0.930  0.020  1.080
 R3S  C14   C09   aromatic  1.395  0.020  1.395
 R3S  C10   C09   aromatic  1.399  0.020  1.399
 R3S  C11   C10   aromatic  1.388  0.020  1.388
 R3S  C10   H10   single    0.930  0.020  1.080
 R3S  C12   C11   aromatic  1.395  0.020  1.395
 R3S  O16   C11   single    1.348  0.020  1.348
 R3S  H12   C12   single    0.930  0.020  1.080
 R3S  C12   C13   aromatic  1.384  0.020  1.384
 R3S  O15   C13   single    1.368  0.020  1.368
 R3S  C13   C14   aromatic  1.388  0.020  1.388
 R3S  C14   H14   single    0.930  0.020  1.080
 R3S  O15   S18   single    1.679  0.020  1.679
 R3S  HO16  O16   single    0.850  0.020  0.980
 R3S  O17   HO17  single    0.850  0.020  0.980
 R3S  O21   S18   deloc     1.458  0.020  1.458
 R3S  S18   O19   deloc     1.461  0.020  1.461
 R3S  S18   O20   deloc     1.460  0.020  1.460

loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 R3S  H01   C01  C06  119.83  3.000
 R3S  C06   C01  C02  119.83  3.000
 R3S  H01   C01  C02  120.33  3.000
 R3S  H02   C02  C03  119.30  3.000
 R3S  H02   C02  C01  118.77  3.000
 R3S  C03   C02  C01  121.92  3.000
 R3S  C07   C03  C04  123.60  3.000
 R3S  C04   C03  C02  117.27  3.000
 R3S  C07   C03  C02  119.13  3.000
 R3S  H04   C04  C05  118.05  3.000
 R3S  C05   C04  C03  121.48  3.000
 R3S  H04   C04  C03  120.46  3.000
 R3S  H05   C05  C06  120.14  3.000
 R3S  C06   C05  C04  120.27  3.000
 R3S  H05   C05  C04  119.59  3.000
 R3S  O17   C06  C05  122.67  3.000
 R3S  O17   C06  C01  118.11  3.000
 R3S  C05   C06  C01  119.22  3.000
 R3S  H07   C07  C08  119.09  3.000
 R3S  H07   C07  C03  114.43  3.000
 R3S  C08   C07  C03  126.47  3.000
 R3S  H08   C08  C09  114.43  3.000
 R3S  H08   C08  C07  119.19  3.000
 R3S  C09   C08  C07  126.38  3.000
 R3S  C14   C09  C10  118.98  3.000
 R3S  C10   C09  C08  122.94  3.000
 R3S  C14   C09  C08  118.08  3.000
 R3S  H10   C10  C11  119.08  3.000
 R3S  H10   C10  C09  120.50  3.000
 R3S  C11   C10  C09  120.42  3.000
 R3S  O16   C11  C12  117.11  3.000
 R3S  O16   C11  C10  122.34  3.000
 R3S  C12   C11  C10  120.54  3.000
 R3S  H12   C12  C13  120.77  3.000
 R3S  C13   C12  C11  118.77  3.000
 R3S  H12   C12  C11  120.45  3.000
 R3S  O15   C13  C14  119.18  3.000
 R3S  C14   C13  C12  121.30  3.000
 R3S  O15   C13  C12  119.48  3.000
 R3S  H14   C14  C13  119.69  3.000
 R3S  H14   C14  C09  120.32  3.000
 R3S  C13   C14  C09  119.99  3.000
 R3S  S18   O15  C13  117.50  3.000
 R3S  HO16  O16  C11  110.31  3.000
 R3S  HO17  O17  C06  110.52  3.000
 R3S  O21   S18  O20  115.42  3.000
 R3S  O20   S18  O19  114.28  3.000
 R3S  O21   S18  O19  115.22  3.000
 R3S  O20   S18  O15  104.84  3.000
 R3S  O19   S18  O15  104.90  3.000
 R3S  O21   S18  O15   99.75  3.000

loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 R3S  CONST_01  C04  C03  C02  C01     0.00   0.0  0
 R3S  CONST_02  C04  C05  C06  C01     0.00   0.0  0
 R3S  CONST_03  C05  C06  C01  C02     0.00   0.0  0
 R3S  CONST_04  C05  C04  C03  C02     0.00   0.0  0
 R3S  CONST_05  C06  C01  C02  C03     0.00   0.0  0
 R3S  CONST_06  C06  C05  C04  C03     0.00   0.0  0
 R3S  CONST_07  C12  C13  C14  C09     0.00   0.0  0
 R3S  CONST_08  C12  C11  C10  C09     0.00   0.0  0
 R3S  CONST_09  C13  C14  C09  C10     0.00   0.0  0
 R3S  CONST_10  C13  C12  C11  C10     0.00   0.0  0
 R3S  CONST_11  C14  C09  C10  C11     0.00   0.0  0
 R3S  CONST_12  C14  C13  C12  C11     0.00   0.0  0
 R3S  CONST_13  C07  C03  C02  C01   180.00   0.0  0
 R3S  CONST_14  O17  C06  C01  C02   180.00   0.0  0
 R3S  CONST_15  O17  C06  C05  C04   180.00   0.0  0
 R3S  CONST_16  C07  C03  C04  C05   180.00   0.0  0
 R3S  CONST_17  C13  C14  C09  C08   180.00   0.0  0
 R3S  CONST_18  C11  C10  C09  C08   180.00   0.0  0
 R3S  CONST_19  O15  C13  C14  C09   180.00   0.0  0
 R3S  CONST_20  O16  C11  C10  C09   180.00   0.0  0
 R3S  CONST_21  O15  C13  C12  C11   180.00   0.0  0
 R3S  CONST_22  O16  C11  C12  C13   180.00   0.0  0
 R3S  CONST_23  H05  C05  C06  C01   180.00   0.0  0
 R3S  CONST_24  H04  C04  C03  C02   180.00   0.0  0
 R3S  CONST_25  H01  C01  C02  C03   180.00   0.0  0
 R3S  CONST_26  H02  C02  C03  C04   180.00   0.0  0
 R3S  CONST_27  H14  C14  C09  C10   180.00   0.0  0
 R3S  CONST_28  H12  C12  C11  C10   180.00   0.0  0
 R3S  CONST_29  H10  C10  C11  C12   180.00   0.0  0
 R3S  Var_01    C09  C08  C07  C03   179.63   0.0  2
 R3S  Var_02    C08  C07  C03  C02   176.56  30.0  2
 R3S  Var_03    C14  C09  C08  C07  -179.11  30.0  2
 R3S  Var_04    O21  S18  O15  C13   174.93  30.0  3

loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 R3S  plan-1  C01  0.020
 R3S  plan-1  C02  0.020
 R3S  plan-1  C03  0.020
 R3S  plan-1  C04  0.020
 R3S  plan-1  C05  0.020
 R3S  plan-1  C06  0.020
 R3S  plan-1  C07  0.020
 R3S  plan-1  O17  0.020
 R3S  plan-1  H01  0.020
 R3S  plan-1  H02  0.020
 R3S  plan-1  H04  0.020
 R3S  plan-1  H05  0.020
 R3S  plan-2  C08  0.020
 R3S  plan-2  C09  0.020
 R3S  plan-2  C10  0.020
 R3S  plan-2  C11  0.020
 R3S  plan-2  C12  0.020
 R3S  plan-2  C13  0.020
 R3S  plan-2  C14  0.020
 R3S  plan-2  O15  0.020
 R3S  plan-2  O16  0.020
 R3S  plan-2  H10  0.020
 R3S  plan-2  H12  0.020
 R3S  plan-2  H14  0.020
 R3S  plan-3  C03  0.020
 R3S  plan-3  C07  0.020
 R3S  plan-3  C08  0.020
 R3S  plan-3  C09  0.020
 R3S  plan-3  H07  0.020
 R3S  plan-3  H08  0.020

