# electronic Ligand Builder and Optimisation Workbench (eLBOW)
#   - a module of PHENIX version dev-svn-
#   - file written: Mon Apr 20 15:13:24 2020
#   Inital geometry file: a 26 line input string
#   Ligand name: acetic acid
#   Quantum optimisation: True
#   Method: PBEh-3c
#   Random seed: 3628800
#   SMILES string: CC(O)=O
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
_chem_comp.initial_date
_chem_comp.modified_date
_chem_comp.source
 CM  CM  'acetic acid              '  ligand  7  4  .  2021-08-07  2021-08-07  
;
Directly from eLBOW using geometry from QM method PBEh-3c with CPCM solvent model
Validated by Mogul as GRAND
;

data_comp_CM
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.charge
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 CM  C1   C  C      0   0.388  -0.0839  -0.0553  -0.0082
 CM  C2   C  CH3    0  -0.783   1.3809   0.4078  -0.0018
 CM  O1   O  O      0  -0.631  -0.2689  -1.2906  -0.0139
 CM  O2   O  OC    -1  -0.625  -0.9684   0.8241  -0.0079
 CM  H21  H  HCH3   0   0.205   1.4841   1.4925   0.0072
 CM  H22  H  HCH3   0   0.223   1.9062   0.0075   0.8686
 CM  H23  H  HCH3   0   0.223   1.9060   0.0234  -0.8796

loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
_chem_comp_bond.value_dist_neutron
 CM  C1  C2   single  1.536  0.020  1.536
 CM  C1  O1   deloc   1.249  0.020  1.249
 CM  C1  O2   deloc   1.247  0.020  1.247
 CM  C2  H21  single  0.970  0.020  1.090
 CM  C2  H22  single  0.970  0.020  1.090
 CM  C2  H23  single  0.970  0.020  1.090

loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 CM  O2   C1  O1   126.32  3.000
 CM  O2   C1  C2   117.62  3.000
 CM  O1   C1  C2   116.06  3.000
 CM  H23  C2  H22  106.26  3.000
 CM  H23  C2  H21  108.14  3.000
 CM  H22  C2  H21  108.22  3.000
 CM  H23  C2  C1   110.42  3.000
 CM  H22  C2  C1   110.56  3.000
 CM  H21  C2  C1   112.98  3.000

loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 CM  Var_01  H21  C2  C1  O1  -179.76  30.0  3

loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 CM  plan-1  C1  0.020
 CM  plan-1  C2  0.020
 CM  plan-1  O1  0.020
 CM  plan-1  O2  0.020

