mmtbx.refinement package
========================

Subpackages
-----------

.. toctree::

    mmtbx.refinement.ensemble_refinement
    mmtbx.refinement.real_space

Submodules
----------

mmtbx.refinement.adp_refinement module
--------------------------------------

.. automodule:: mmtbx.refinement.adp_refinement
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.anomalous_scatterer_groups module
--------------------------------------------------

.. automodule:: mmtbx.refinement.anomalous_scatterer_groups
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.fit_rotamers module
------------------------------------

.. automodule:: mmtbx.refinement.fit_rotamers
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.flip_peptides module
-------------------------------------

.. automodule:: mmtbx.refinement.flip_peptides
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.geometry_minimization module
---------------------------------------------

.. automodule:: mmtbx.refinement.geometry_minimization
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.group module
-----------------------------

.. automodule:: mmtbx.refinement.group
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.inspect_tardy_trajectory module
------------------------------------------------

.. automodule:: mmtbx.refinement.inspect_tardy_trajectory
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.minimization module
------------------------------------

.. automodule:: mmtbx.refinement.minimization
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.minimization_ncs_constraints module
----------------------------------------------------

.. automodule:: mmtbx.refinement.minimization_ncs_constraints
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.occupancies module
-----------------------------------

.. automodule:: mmtbx.refinement.occupancies
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.orca module
----------------------------

.. automodule:: mmtbx.refinement.orca
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.print_statistics module
----------------------------------------

.. automodule:: mmtbx.refinement.print_statistics
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.refinement_flags module
----------------------------------------

.. automodule:: mmtbx.refinement.refinement_flags
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.rigid_body module
----------------------------------

.. automodule:: mmtbx.refinement.rigid_body
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.select_best_starting_model module
--------------------------------------------------

.. automodule:: mmtbx.refinement.select_best_starting_model
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.tardy module
-----------------------------

.. automodule:: mmtbx.refinement.tardy
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.targets module
-------------------------------

.. automodule:: mmtbx.refinement.targets
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.weights_params module
--------------------------------------

.. automodule:: mmtbx.refinement.weights_params
    :members:
    :undoc-members:
    :show-inheritance:

mmtbx.refinement.wx_tardy_pdb module
------------------------------------

.. automodule:: mmtbx.refinement.wx_tardy_pdb
    :members:
    :undoc-members:
    :show-inheritance:


Module contents
---------------

.. automodule:: mmtbx.refinement
    :members:
    :undoc-members:
    :show-inheritance: