#include <boost/python/class.hpp>
#include <boost/python/return_value_policy.hpp>
#include <boost/python.hpp>
#include <mmtbx/hydrogens/hydrogens.h>

#include <cctbx/boost_python/flex_fwd.h>

//SCITBX_BOOST_IS_POLYMORPHIC_WORKAROUND(mmtbx::hydrogens::common)

namespace mmtbx { namespace hydrogens {
  namespace bp = boost::python;

namespace {
  boost::python::tuple
  getinitargs(riding_coefficients const& self)
  {
    return boost::python::make_tuple(self.a0);
  }

  void init_module()
  {
    using namespace boost::python;
    using boost::python::arg;
    typedef return_value_policy<return_by_value> rbv;

    class_<riding_coefficients>("riding_coefficients")
      .def(init<string const&, int const&, int const&, int const&, int const&,
                int const&, double const&, double const&,
                double const&, int const&, double const& >(
                    (arg("htype"),arg("ih"), arg("a0"),arg("a1"),arg("a2"), arg("a3"),
                     arg("a"), arg("b"), arg("h"), arg("n"), arg("disth"))))
      .def(init<riding_coefficients const& >())
      .add_property("htype",
                    make_getter(&riding_coefficients::htype, rbv()),
                    make_setter(&riding_coefficients::htype, rbv()) )
      .add_property("ih",
                    make_getter(&riding_coefficients::ih, rbv()),
                    make_setter(&riding_coefficients::ih, rbv()) )
      .add_property("a0",
                    make_getter(&riding_coefficients::a0, rbv()),
                    make_setter(&riding_coefficients::a0, rbv()) )
      .add_property("a1",
                    make_getter(&riding_coefficients::a1, rbv()),
                    make_setter(&riding_coefficients::a1, rbv()) )
      .add_property("a2",
                    make_getter(&riding_coefficients::a2, rbv()),
                    make_setter(&riding_coefficients::a2, rbv()) )
      .add_property("a3",
                    make_getter(&riding_coefficients::a3, rbv()),
                    make_setter(&riding_coefficients::a3, rbv()) )
      .add_property("a",
                    make_getter(&riding_coefficients::a, rbv()),
                    make_setter(&riding_coefficients::a, rbv()) )
      .add_property("b",
                    make_getter(&riding_coefficients::b, rbv()),
                    make_setter(&riding_coefficients::b, rbv()) )
      .add_property("h",
                    make_getter(&riding_coefficients::h, rbv()),
                    make_setter(&riding_coefficients::h, rbv()) )
      .add_property("n",
                    make_getter(&riding_coefficients::n, rbv()),
                    make_setter(&riding_coefficients::n, rbv()) )
      .add_property("disth",
                    make_getter(&riding_coefficients::disth, rbv()),
                    make_setter(&riding_coefficients::disth, rbv()) )
      .def("__getinitargs__", getinitargs)
    ;

    def("compute_h_position",
         (vec3<double>(*)
               (riding_coefficients,
                af::const_ref<vec3<double> > const&)) compute_h_position,
                  (arg("riding_coefficients"),
                   arg("sites_cart")))
    ;

    def("apply_new_H_positions",
         (void(*)
               (af::ref<vec3<double> >,
                boost::python::list const&)) apply_new_H_positions,
                  (arg("sites_cart"),
                   arg("parameterization")))
    ;

    def("modify_gradients_cpp",
          (af::shared<scitbx::vec3<double> >(*)
              (af::shared<scitbx::vec3<double> >,
               af::shared<vec3<double> > const&,
               boost::python::list const& )) modify_gradients_cpp,
                 (arg("gradients"),
                  arg("sites_cart"),
                  arg("parameterization")))
    ;

  }

} // namespace <anonymous>
}} // namespace mmtbx::hydrogens

BOOST_PYTHON_MODULE(mmtbx_hydrogens_ext)
{
  mmtbx::hydrogens::init_module();
}