B d 1@sZddlmZmZmZddlZddlZddlZddlZddlZddl Z yXej ddgZ e e ZddlZedddDreeedkrd ZdZWnek rd ZdZYnXyddlZdd lmZWnek rdZdZYnXy ddlZWnek rdZYnXd d ZeZdd dZejddZddZ ddZ!ddZ"dS))absolute_importdivisionprint_functionNz-cz"import pip; print(pip.__version__)ccs|]}|ttkVqdS)N)dir pkg_resources).0symbolr o/mnt/filia/a/genomebrowser/www/genomebrowser/fleming/tools/molprobity/modules/cctbx_project/libtbx/pkg_utils.py sr ) parse_versionrequireDistributionNotFoundVersionConflictz9.0.0F) RequirementcsNttjdtjtjtjfdd|DtjtjdtjdS)NzP================================================================================c3s|]}|jfVqdS)N)format)rl)contextr r r 1sz_notice..)printoslinesepjoin)linesrr )rr _notice/srcCststdddddddS|s"d}t||}|jrB|jsBdSd|_|j}t|}|jt|j}yXy td |t |d j fdSt j k rtd |t |d j fdSXWnxt j k rd }|}d }td|YnLt jk r6t |d j }t |d j}d}td||fYnXxttjD]j} tj| |d} tj| r@t| d} | } WdQRXtddddddd|||| d dSq@Wtjtjdstdddddd||||d dStdrtdd krtddd!||||ddStjjjrDtddd"||||ddStd#j||d$tj !d%} tj"d&d'd |g}t#$|}|j%}| stj &d%d|d krtd(j|d)dStd*j|d)dSdS)+a|Ensure a package requirement is met. Install or update package as required and print a warning message if this can't be done due to the local environment, or when automatic package management is disabled by setting the environment variable 'LIBTBX_DISABLE_UPDATES'. :param pkgname: A string describing the package requirement. This will generally just be a package name, but package features can be specified in square brackets. Features are not enforced, but will be requested during installation and update. :param version: An optional string describing version constraints. This can be a minimum version, eg. '>=1.0', a maximum version, eg. '<2', or both, eg. '>=4.5,<4.6'. :return: True when the requirement is met, False otherwise.zR WARNING: Can not verify python package requirements - pip/setuptools out of datez. Please update pip and setuptools by running:z9 libtbx.python -m pip install pip setuptools --upgradezL or following the instructions at https://pip.pypa.io/en/stable/installing/FTNzrequires %s, has %srz)requires %s, has %s, but without featuresz(not determined)installz:requirement %s is not currently met, package not installedupdatez7requirement %s is not currently met, current version %sz .egg-linkrz< WARNING: Can not update package {package} automatically.zKIt is installed as editable package for development purposes. The currentlyzWinstalled version, {currentversion}, is too old. The required version is {requirement}.z=Please update the package manually in its installed location:z {location})packagecurrentversion requirementlocation.z> WARNING: Can not {action} package {package} automatically.zMYou are running in a base-less installation, which disables automatic packagezOmanagement by convention, see https://github.com/cctbx/cctbx_project/issues/151z%Please {action} the package manually.)rrr actionZLIBTBX_DISABLE_UPDATES)0rzMEnvironment variable LIBTBX_DISABLE_UPDATES is set. Please {action} manually.z9You are in a conda environment. Please {action} manually.z#attempting {action} of {package}...)r#rZPIP_REQ_TRACKERz-mpipz{action} successful)r#z&{action} failed. please check manually)'use_piprrmarkerZevaluatenamestr specifierrrr versionZ UnknownExtrarr project_namesyspathrrisfileopenreadlinestripisdirlibtbxenv under_basegetenv build_options use_condarenvironget executable subprocessrun returncodepop)Zpkgnamer+r Z basepkgnameZ requirestringZbaserequirestringrr,r# path_itemZegg_linkfhr!Zhas_req_trackerZpip_install_cmdZpip_install_resultZ exit_coder r r r 6s          r c cstjdkrdVdStjzEntry points can only be defined from within libtbx_refresh.pyz.libtbx_refreshNizXYou must install setuptools to configure package {}. Run libtbx.pip install setuptoolszEntry points have already been defined for package %s. There must only be a single call to define_entry_points() per calling packagez"Updating entry points for {caller})callerz" {n} entries for entry point {ep})epnlibzsetup.pyZegg_infoz libtbx.{}z!libtbx entry point manager for {})r( description entry_points)! Exceptionr-exc_infotb_framef_back f_globalsrr.abspathf_code co_filenamesplitextendswith RuntimeErrorbasenamedirname setuptools ImportErrorr_defined_entrypointsaddrlengetcwdchdirrabsr4r5 build_pathargvrLsetup) ZepdictkwargsframerPZ refresh_file_rQcurdirZ argv_origr r r define_entry_pointssJ         rrcsjdkstdfdd|D}t|dkrTt|dkrJtdd||d}nd}|r|jj@|_|jjB|_|jjB|_n |dS) a{Merge a new requirement with a list. If it exists in an identical form (name, marker) then the specifiers and extras will be merged, otherwise it will be added. If the environment markers are different it will assume that they are mutually exclusive - entries will only be merged if identical, which could cause problems with duplicate requirement entries if not filtered by pass status later. URL field is also not handled, as unsure how to merge these if they differ. Args: requirements (List[packaging.requirements.Requirement]): Existing. new_req (packaging.requirements.Requirement): New requirement Nz)URL requirement fields not handled/testedcs(g|] }|jjkr|jjkr|qSr )r(r')rx)new_reqr r s z'_merge_requirements..rz,Warning: More than one match for requirementz: )urlAssertionErrorrgrr*modulesextrasappend) requirementsrtmatchesmatchr )rtr _merge_requirementss    rcCsDg}x:tjdd|DD]"\}}t|}|h|_t||qW|S)aCombine python requirements from a module list. An attempt will be made to merge any joint requirements. The requirement objects will have an added property 'modules', which is a set of module names that formed the requirement. Attr: modules (Iterable[libtbx.env_config.module]): The module list Returns: List[packaging.requirements.Requirement]: The merged requirements cs*g|]"tdrfddjDqS)python_requiredcsg|]}j|fqSr )r()ry)rsr r ru,sz:collate_python_requirements...)hasattrr)rr )rsr ru,sz/collate_python_requirements..) itertoolschainrryr)ryr|modulespecr r r r collate_python_requirementss r)N)# __future__rrr contextlibrrr-r=libtbx.load_envr4r<Zpip_version_cmd check_outputdecoder2Zpip_version_strrallr r&rd packagingZpackaging.requirementsrrcrsetrer contextmanagerrLrrrrr r r r sF       l>(