from __future__ import absolute_import, division, print_function from libtbx import test_utils import sys import libtbx.load_env tst_list_base = [ "$D/regression/tst_wildcard.py", "$D/regression/tst_simple_parser.py", "$D/regression/tst_phil.py", "$D/regression/tst_pdb_cif_inputs.py", "$D/regression/tst_data_manager.py", "$D/regression/tst_map_manager_wrapping.py", "$D/regression/tst_map_manager.py", "$D/regression/tst_map_model_manager.py", "$D/regression/tst_map_model_manager_2.py", "$D/regression/tst_map_model_manager_3.py", "$D/regression/tst_map_model_manager_4.py", "$D/regression/tst_map_model_manager_model_sharpening_5.py", "$D/regression/tst_map_model_manager_call_consistency.py", "$D/regression/tst_map_model_manager_external_sharpening_7.py", "$D/regression/tst_map_model_manager_half_map_sharpening_6.py", "$D/regression/tst_map_model_manager_tls_from_map_8.py", "$D/regression/tst_map_tools.py", "$D/regression/tst_patterson.py", "$D/regression/tst_restraints_merge.py", "$D/ranges.py", "$D/regression/tst_crystal_symmetry_from_any.py", "$D/regression/tst_poscar.py", "$D/kriber/tst_strudat.py", "$D/cif/tests/tst_geometry.py", "$D/cif/tests/tst_lex_parse_build.py", "$D/cif/tests/tst_model.py", "$D/cif/tests/tst_restraints.py", "$D/cif/tests/tst_validation.py", "$D/cif/tests/tst_ucif_examples_compilation.py", "$D/cif/tests/tst_parser.py", "$D/cif/tests/tst_citations.py", "$D/cif/tests/tst_model_builder.py", "$D/shelx/tst_lex_parse_build.py", "$D/shelx/tst_hklf.py", "$D/shelx/tst_writer.py", "$D/shelx/tst_fvar_encoding.py", "$D/pdb/tst_pdb.py", "$D/pdb/tst_mmcif.py", "$D/pdb/tst_mmcif_hierarchy.py", "$D/pdb/tst_mmcif_hierarchy_2.py", "$D/pdb/tst_tls.py", ["$D/pdb/hybrid_36.py", "exercise"], "$B/pdb/hybrid_36_fem", "$D/pdb/tst_hierarchy.py", "$D/pdb/tst_hierarchy_atom_sort.py", "$D/pdb/tst_hierarchy_flip_symmetric.py", "$D/regression/tst_selected_hierarchy_flip.py", "$D/pdb/tst_ext.py", "$D/pdb/tst_atom_selection.py", "$D/pdb/tst_rna_dna_atom_names.py", "$D/pdb/tst_atom_name_interpretation.py", "$D/pdb/tst_extract_rfactors_resolutions_sigma.py", "$D/pdb/modified_aa_names.py", "$D/pdb/modified_rna_dna_names.py", "$D/regression/secondary_structure/tst_sheet.py", "$D/regression/secondary_structure/tst_annotation.py", "$D/pdb/secondary_structure.py", "$D/pdb/tst_atom_selection_string.py", "$D/pdb/tst_secondary_structure.py", "$D/pdb/tst_utils.py", "$D/pdb/tst_secondary_structure_2.py", "$D/pdb/remediation/tst_remediator.py", "$D/examples/pdb_to_map_simple.py", "$D/examples/pdb_truncate_to_ala/tst.py", "$D/examples/pdb_tardy_conf_sampling_simple.py", "$D/regression/tst_examples.py", "$D/cns/space_group_symbols.py", "$D/cns/tst_cns.py", ["$D/scalepack/tst_merge.py", "P31"], "$D/scalepack/no_merge_original_index.py", "$D/ccp4_map/tst.py", "$D/mtz/tst_ext.py", "$D/mtz/tst_extract_from_symmetry_lib.py", "$D/mtz/tst_dano.py", "$D/mtz/tst_miller_dict.py", "$D/mtz/tst_unmerged.py", ["$D/mtz/tst.py", "P31"], "$D/examples/tst_mtz_free_flipper.py", "$D/regression/tst_reflection_file_utils.py", "$D/detectors/tst_adsc.py", "$D/detectors/tst_detectors.py", "$D/xplor/tst_xplormap.py", ["$D/regression/tst_phases.py", "P31"], "$D/regression/tst_pdbx_mmcif_tutorial.py", "$D/regression/tst_lattice_symmetry.py", ["$D/regression/tst_reflection_statistics.py", "Fdd2 P31m"], "$D/regression/tst_data_plots.py", "$D/regression/tst_csv_utils.py", "$D/regression/tst_file_reader.py", "$D/regression/tst_bioinformatics.py", "$D/regression/tst_box_around_molecule.py", "$D/regression/tst_mmcif_segids.py", "$D/regression/tst_mmcif_multimodel.py", "$D/regression/tst_add_conformations.py", "$D/regression/tst_symmetry.py", "$D/regression/tst_reindex.py", "$D/regression/tst_reflection_file_editor.py", "$D/regression/tst_split_models.py", "$D/regression/tst_pdb_as_fasta.py", "$D/regression/tst_pdb_link_records.py", "$D/regression/tst_merging_statistics.py", "$D/regression/tst_simple_map_coefficients.py", "$D/regression/tst_sort_atoms.py", "$D/xds/tests/tst_xparm.py", "$D/xds/tests/tst_xds_inp.py", "$D/xds/tests/tst_integrate_hkl.py", "$D/xds/tests/tst_spots_xds.py", "$D/regression/tst_pdb_as_cif.py", "$D/scalepack/tst_no_merge_original_index.py", "$D/regression/tst_export_scalepack_unmerged.py", ["$D/dsn6/tst.py", "P31"], "$D/regression/ncs/tst_mtrix_biomt_cmdl.py", "$D/regression/ncs/tst_mmcif_biomt_reduction_output.py", "$D/regression/ncs/tst_ncs_search_ligs.py", "$D/regression/ncs/tst_ncs_search_broken_chain.py", "$D/regression/ncs/tst_ncs_groups_preprocessing.py", "$D/regression/ncs/tst_ncs_input.py", "$D/regression/ncs/tst_ncs_user_selections.py", "$D/regression/ncs/tst_ncs.py", "$D/regression/ncs/tst_ncs_without_validation.py", "$D/pdb/tst_read_mtrix_records_from_cif.py", "$D/regression/tst_show_systematic_absences.py", "$D/regression/tst_miller_sort_asu.py", "$D/regression/tst_reflection_file_reader.py", "$D/regression/tst_xray_scale.py", "$D/bioinformatics/test/tst_alignment_as_hsearch.py", "$D/bioinformatics/test/tst_ebi_wu_blast_xml.py", "$D/bioinformatics/test/tst_ncbi_blast_xml.py", "$D/bioinformatics/pdb_info.py", "$D/regression/tst_cif_as_pdb_1atom.py", "$D/regression/tst_cif_1.py", "$D/regression/tst_split_data_cif.py", "$D/regression/tst_all_chain_ids.py", "$D/regression/tst_extract_xtal_data.py", "$D/regression/tst_cli_parser.py", "$D/regression/tst_mtz_as_cif.py", "$D/regression/tst_group_rounding.py", "$D/regression/tst_hierarchy_occupancies_rounding.py", ] # failing tests on Windows, Python 2.7 tst_list_windows_fail = [ "$D/detectors/tst_debug_write.py", ] tst_list_fail = ["$D/regression/ncs/tst_ncs_reordered_chains.py", ] if sys.platform == 'win32': tst_list_fail += tst_list_windows_fail else: tst_list_base += tst_list_windows_fail tst_list_py3_unstable = [] tst_list_unstable = list() if sys.version_info > (3, 0): tst_list_unstable += tst_list_py3_unstable else: tst_list_base += tst_list_py3_unstable # final lists tst_list = tst_list_base tst_list_expected_failures = tst_list_fail tst_list_expected_unstable = tst_list_unstable def run(): build_dir = libtbx.env.under_build("iotbx") dist_dir = libtbx.env.dist_path("iotbx") test_utils.run_tests(build_dir, dist_dir, tst_list) if (__name__ == "__main__"): run()