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 [1

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[]\OT1/cmr/m/n/9 The li-brary ap-pears to de-fine (at least) three ob-jects. Th
e one we started on was the cbf[]handle[]struct
 []

[2] [3]
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[][][][]\OT1/cmtt/m/n/9 #define CBF_PARSE_TQ    0x0800  /* PARSE treble quotes 
"""...""" and '''...'''       */  
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[][][][]\OT1/cmtt/m/n/9 #define CBF_PARSE_WIDE      0x4000  /* PARSE wide files
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[][][][]\OT1/cmtt/m/n/9 #define CBF_PARSE_UTF8      0x10000 /* PARSE UTF-8     
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[4] [5]
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[][][]                []\OT1/cmtt/m/n/9 PyErr_SetString(PyExc_ValueError,"Expec
ting a sequence of long integers");  
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 [7]
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[][][]                []\OT1/cmtt/m/n/9 PyErr_SetString(PyExc_ValueError,"Expec
ting a sequence of long integers");  
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 [8]
[9]
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 []


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[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, elsign, (si
ze_t) ndimslow, (size_t) ndimmid, (size_t)ndimfast));  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2289--2289
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int elsig
n, int ndimfast, int ndimmid, int ndimslow){  
 []


Overfull \hbox (35.55115pt too wide) in paragraph at lines 2298--2298
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_3d_image_fs (self, reser
ved, element_number, compression,  
 []


Overfull \hbox (130.05005pt too wide) in paragraph at lines 2299--2299
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, elsign, (si
ze_t) ndimfast, (size_t) ndimmid, (size_t)ndimslow));  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2317--2317
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int elsig
n, int ndimslow, int ndimmid, int ndimfast){  
 []


Overfull \hbox (35.55115pt too wide) in paragraph at lines 2326--2326
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_3d_image_sf (self, reser
ved, element_number, compression,  
 []


Overfull \hbox (130.05005pt too wide) in paragraph at lines 2327--2327
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, elsign, (si
ze_t) ndimslow, (size_t) ndimmid, (size_t)ndimfast));  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 2341--2341
[][][][]\OT1/cmtt/m/n/9 %apply (char *STRING, int LENGTH) { (char *data, int le
n) } set_real_3d_image_sf;  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2345--2345
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int ndims
low, int ndimmid, int ndimfast){  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 2354--2354
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_real_3d_image (self, res
erved, element_number, compression,  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2355--2355
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, (size_t) nd
imslow, (size_t)ndimmid, (size_t)ndimfast));  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 2369--2369
[][][][]\OT1/cmtt/m/n/9 %apply (char *STRING, int LENGTH) { (char *data, int le
n) } set_real_3d_image_fs;  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2373--2373
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int ndimf
ast, int ndimmid, int ndimslow){  
 []


Overfull \hbox (59.17587pt too wide) in paragraph at lines 2382--2382
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_real_3d_image_fs (self, 
reserved, element_number, compression,  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2383--2383
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, (size_t) nd
imfast, (size_t)ndimmid, (size_t)ndimslow));  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 2397--2397
[][][][]\OT1/cmtt/m/n/9 %apply (char *STRING, int LENGTH) { (char *data, int le
n) } set_real_3d_image_sf;  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2401--2401
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int ndims
low, int ndimmid, int ndimfast){  
 []


Overfull \hbox (59.17587pt too wide) in paragraph at lines 2410--2410
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_real_3d_image_sf (self, 
reserved, element_number, compression,  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2411--2411
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, (size_t) nd
imslow, (size_t)ndimmid, (size_t)ndimfast));  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 2423--2423
[][][]     []\OT1/cmtt/m/n/9 void get_image_size(unsigned int element_number, i
nt *ndimslow, int *ndimfast){  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 2427--2427
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_image_size(self,reserved,el
ement_number,&inslow,&infast));  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 2431--2431
[][][][]\OT1/cmtt/m/n/9 ""","get_image_size",["Integer element_number"],["size_
t ndim1","size_t ndim2"],],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2436--2436
[][][]     []\OT1/cmtt/m/n/9 void get_image_size_fs(unsigned int element_number
, int *ndimfast, int *ndimslow){  
 []


Overfull \hbox (40.2761pt too wide) in paragraph at lines 2440--2440
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_image_size_fs(self,reserved
,element_number,&infast,&inslow));  
 []


Overfull \hbox (49.72598pt too wide) in paragraph at lines 2444--2444
[][][][]\OT1/cmtt/m/n/9 ""","get_image_size_fs",["Integer element_number"],["si
ze_t ndimfast","size_t ndimslow"],],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2449--2449
[][][]     []\OT1/cmtt/m/n/9 void get_image_size_sf(unsigned int element_number
, int *ndimslow, int *ndimfast){  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 2453--2453
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_image_size(self,reserved,el
ement_number,&inslow,&infast));  
 []


Overfull \hbox (49.72598pt too wide) in paragraph at lines 2457--2457
[][][][]\OT1/cmtt/m/n/9 ""","get_image_size_sf",["Integer element_number"],["si
ze_t ndimslow","size_t ndimfast"],],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 2461--2461
[][][][]\OT1/cmtt/m/n/9 %apply int *OUTPUT {int *ndimslow, int *ndimmid, int *n
dimfast} get_3d_image_size;  
 []


Overfull \hbox (96.97543pt too wide) in paragraph at lines 2462--2462
[][][]     []\OT1/cmtt/m/n/9 void get_3d_image_size(unsigned int element_number
, int *ndimslow, int *ndimmid, int *ndimfast){  
 []


Overfull \hbox (73.35071pt too wide) in paragraph at lines 2466--2466
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_3d_image_size(self,reserved
,element_number,&inslow,&inmid,&infast));  
 []


Overfull \hbox (130.05005pt too wide) in paragraph at lines 2471--2471
[][][][]\OT1/cmtt/m/n/9 ""","get_3d_image_size",["Integer element_number"],["si
ze_t ndimslow","size_t ndimmid","size_t ndimfast"],],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 2475--2475
[][][][]\OT1/cmtt/m/n/9 %apply int *OUTPUT {int *ndimslow, int *ndimmid, int *n
dimfast} get_3d_image_size;  
 []


Overfull \hbox (111.15027pt too wide) in paragraph at lines 2476--2476
[][][]     []\OT1/cmtt/m/n/9 void get_3d_image_size_fs(unsigned int element_num
ber, int *ndimfast, int *ndimmid, int *ndimslow){  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2480--2480
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_3d_image_size_fs(self,reser
ved,element_number,&infast,&inmid,&inslow));  
 []


Overfull \hbox (130.05005pt too wide) in paragraph at lines 2485--2485
[][][][]\OT1/cmtt/m/n/9 ""","get_3d_image_size",["Integer element_number"],["si
ze_t ndimfast","size_t ndimmid","size_t ndimslow"],],  
 []


Overfull \hbox (21.37631pt too wide) in paragraph at lines 2489--2489
[][][][]\OT1/cmtt/m/n/9 %apply int *OUTPUT {int *ndimslow, int *ndimmid, int *n
dimfast} get_3d_image_size_sf;  
 []


Overfull \hbox (111.15027pt too wide) in paragraph at lines 2490--2490
[][][]     []\OT1/cmtt/m/n/9 void get_3d_image_size_sf(unsigned int element_num
ber, int *ndimslow, int *ndimmid, int *ndimfast){  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2494--2494
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_3d_image_size_sf(self,reser
ved,element_number,&inslow,&inmid,&infast));  
 []


Overfull \hbox (144.22488pt too wide) in paragraph at lines 2499--2499
[][][][]\OT1/cmtt/m/n/9 ""","get_3d_image_size_sf",["Integer element_number"],[
"size_t ndimslow","size_t ndimmid","size_t ndimfast"],],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 2847--2847
[][][][]\OT1/cmtt/m/n/9 ""","get_axis_ancestor",["String axis_id", "Integer anc
estor_index"],["String"],],  
 []


Overfull \hbox (40.2761pt too wide) in paragraph at lines 2879--2879
[][][][]\OT1/cmtt/m/n/9 %apply double *OUTPUT {double *offset1, double *offset2
, double offset3} get_axis_offset;  
 []


Overfull \hbox (40.2761pt too wide) in paragraph at lines 2920--2920
[][][][]\OT1/cmtt/m/n/9 %apply double *OUTPUT {double *vector1, double *vector2
, double vector3} get_axis_vector;  
 []


Overfull \hbox (35.55115pt too wide) in paragraph at lines 3067--3067
[][][]    []\OT1/cmtt/m/n/9 [],["Float a", "Float b", "Float c", "Float alpha",
 "Float beta", "Float gamma" ] ],  
 []


Overfull \hbox (144.22488pt too wide) in paragraph at lines 3102--3102
[][][]    []\OT1/cmtt/m/n/9 [],["Float astar", "Float bstar", "Float cstar", "F
loat alphastar", "Float betastar", "Float gammastar"] ],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 3106--3106
[][][]  []\OT1/cmtt/m/n/9 double *alpha_esd, double *beta_esd, double *gamma_es
d} get_reciprocal_cell_esd;  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 3220--3220
[][][][]\OT1/cmtt/m/n/9 ""","cbf_require_category_root",["String Categoryname"]
,["String categoryroot"],],  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 3237--3237
[][][]   []\OT1/cmtt/m/n/9 void set_bin_sizes( int element_number, double slowb
insize_in, double fastbinsize_in) {  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3238--3238
[][][]     []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_bin_sizes(self,element_number,
slowbinsize_in,fastbinsize_in));  
 []


Overfull \hbox (82.8006pt too wide) in paragraph at lines 3240--3240
[][][][]\OT1/cmtt/m/n/9 ""","set_bin_sizes",["Integer element_number","Float sl
owbinsize_in","Float fastbinsize_in"],[] ],  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 3245--3245
[][][]  []\OT1/cmtt/m/n/9 void get_bin_sizes(int element_number, double *slowbi
nsize, double *fastbinsize) {  
 []


Overfull \hbox (82.8006pt too wide) in paragraph at lines 3246--3246
[][][]    []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_bin_sizes (self, (unsigned int)
element_number, slowbinsize, fastbinsize));  
 []


Overfull \hbox (49.72598pt too wide) in paragraph at lines 3248--3248
[][][][]\OT1/cmtt/m/n/9 ""","get_bin_sizes",["Integer element_number"],["Float 
slowbinsize","Float fastbinsize"] ],  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 3300--3300
[][][]    []\OT1/cmtt/m/n/9 cbf_failnez(cbf_construct_reference_detector(self,&
detector,element_number));  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 3303--3303
[][][][]\OT1/cmtt/m/n/9 ""","construct_reference_detector",["Integer element_nu
mber"],["pycbf detector object"],],  
 []


Overfull \hbox (35.55115pt too wide) in paragraph at lines 3311--3311
[][][][]\OT1/cmtt/m/n/9 ""","require_reference_detector",["Integer element_numb
er"],["pycbf detector object"],],  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 3336--3336
[][][][]\OT1/cmtt/m/n/9 ""","construct_reference_positioner",["String axis_id"]
,["pycbf positioner object"],],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 3342--3342
[][][]  []\OT1/cmtt/m/n/9 void get_axis_reference_poise(double *vector1, double
 *vector2, double *vector3,  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 3517--3517
[][][]          []\OT1/cmtt/m/n/9 if args[1].find("cbf")==-1: # but do not try 
the goniometer constructor  
 []


Overfull \hbox (243.44873pt too wide) in paragraph at lines 3613--3613
[][][]  []\OT1/cmtt/m/n/9 %apply double *OUTPUT {double * vector1, double * vec
tor2, double * vector3, double * offset1, double * offset2, double * offset3,  

 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 3715--3715
[][][]                                    []\OT1/cmtt/m/n/9 indexfast,indexslow
,normal1,normal2,normal3));  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 3727--3727
[][][]                                    []\OT1/cmtt/m/n/9 indexslow,indexfast
,normal1,normal2,normal3));  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 3736--3736
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axis_slow ( double *slowaxis1, dou
ble *slowaxis2, double *slowaxis3){  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 3746--3746
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axis_fast ( double *fastaxis1, dou
ble *fastaxis2, double *fastaxis3){  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 3757--3757
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axes ( double *slowaxis1, double *
slowaxis2, double *slowaxis3,  
 []


Overfull \hbox (21.37631pt too wide) in paragraph at lines 3758--3758
[][][]                            []\OT1/cmtt/m/n/9 double *fastaxis1, double *
fastaxis2, double *fastaxis3){  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3771--3771
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axes_fs ( double *fastaxis1, doubl
e *fastaxis2, double *fastaxis3,  
 []


Overfull \hbox (35.55115pt too wide) in paragraph at lines 3772--3772
[][][]                               []\OT1/cmtt/m/n/9 double *slowaxis1, doubl
e *slowaxis2, double *slowaxis3){  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3785--3785
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axes_sf ( double *slowaxis1, doubl
e *slowaxis2, double *slowaxis3,  
 []


Overfull \hbox (21.37631pt too wide) in paragraph at lines 3786--3786
[][][]                            []\OT1/cmtt/m/n/9 double *fastaxis1, double *
fastaxis2, double *fastaxis3){  
 []


Overfull \hbox (11.92642pt too wide) in paragraph at lines 3829--3829
[][][]                                       []\OT1/cmtt/m/n/9 indexfast, index
slow, area,projected_area));  
 []


Overfull \hbox (11.92642pt too wide) in paragraph at lines 3840--3840
[][][]                                       []\OT1/cmtt/m/n/9 indexslow, index
fast, area,projected_area));  
 []


Overfull \hbox (163.12466pt too wide) in paragraph at lines 3887--3887
[][][]      []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_pixel_coordinates_fs(self, in
dexfast, indexslow, coordinate1, coordinate2, coordinate3));  
 []


Overfull \hbox (163.12466pt too wide) in paragraph at lines 3900--3900
[][][]      []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_pixel_coordinates_sf(self, in
dexslow, indexfast, coordinate1, coordinate2, coordinate3));  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 3927--3927
[][][][]\OT1/cmtt/m/n/9 ["double indexfast", "double indexslow", "double center
fast","double centerslow"],],  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 3939--3939
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"],],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3949--3949
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"],[],],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3959--3959
[][][][]\OT1/cmtt/m/n/9 ["double indexfast", "double indexslow", "double center
fast","double centerslow"],[],],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3969--3969
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"],[],],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3979--3979
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"],[],],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3989--3989
[][][][]\OT1/cmtt/m/n/9 ["double indexfast", "double indexslow", "double center
fast","double centerslow"],[],],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3999--3999
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"],[],],  
 []


Overfull \hbox (49.72598pt too wide) in paragraph at lines 4200--4200
[][][]  []\OT1/cmtt/m/n/9 void compute_reciprocal_cell(double cell[6], double *
astar, double *bstar, double *cstar,  
 []


Overfull \hbox (111.15027pt too wide) in paragraph at lines 4214--4214
[][][][]\OT1/cmtt/m/n/9 ["Float astar", "Float bstar", "Float cstar", "Float al
phastar", "Float betastar", "Float gammastar"] ],  
 []


Overfull \hbox (106.42532pt too wide) in paragraph at lines 4225--4225
[][][][]\OT1/cmtt/m/n/9 ""","airy_disk",["double x", "double y", "double cenx",
 "double ceny", "double volume", "double fwhm"],  
 []


Overfull \hbox (21.37631pt too wide) in paragraph at lines 4233--4233
[][][][]\OT1/cmtt/m/n/9 cbf_failnez(cbf_airy_disk_volume(xlo,ylo,xhi,yhi,cenx,c
eny,volumein,fwhm,volumeout));  
 []


Overfull \hbox (300.14807pt too wide) in paragraph at lines 4237--4237
[][][][]\OT1/cmtt/m/n/9 ""","airy_disk_volume",["double xlo", "double ylo", "do
uble xhi", "double yhi", "double cenx", "double ceny", "double volumein", "doub
le fwhm"],  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 4326--4326
[][][]           []\OT1/cmtt/m/n/9 cbf_handle_wrapper.wrap("cbf_get_unit_cell_e
sd",prototype,args,docstring)  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 4328--4328
[][][]           []\OT1/cmtt/m/n/9 cbf_handle_wrapper.wrap("cbf_get_reciprocal_
cell_esd",prototype,args,docstring)  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 4330--4330
[][][]           []\OT1/cmtt/m/n/9 cbf_handle_wrapper.wrap("cbf_set_unit_cell_e
sd",prototype,args,docstring)  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 4332--4332
[][][]           []\OT1/cmtt/m/n/9 cbf_handle_wrapper.wrap("cbf_set_reciprocal_
cell_esd",prototype,args,docstring)  
 []

! Dimension too large.
\height ->\ht \@tempboxa 
                         
l.4363 \end{minipage}
                     \vspace{4ex}
? 

Overfull \hbox (304.87302pt too wide) in paragraph at lines 4392--4392
[][][]         []\OT1/cmtt/m/n/9 'm4_ifelse(regexlibdir,`NOREGEXLIBDIR',`librar
y_dirs=["../solib/","../lib/"],',`library_dirs=["../solib/","../lib/","'regexli
bdir`"],')`  
 []


Overfull \hbox (399.37192pt too wide) in paragraph at lines 4393--4393
[][][]         []\OT1/cmtt/m/n/9 'm4_ifelse(regexlib,`',`libraries=["cbf"],', `
m4_ifelse(regexlib2,`',`libraries=["cbf","'regexlib`"],',`libraries=["cbf","'re
gexlib`","'regexlib2`"],')'  )`  
 []


Underfull \vbox (badness 1248) has occurred while \output is active []

 [10]
Underfull \vbox (badness 10000) has occurred while \output is active []

 [11]
[12] (./TODO.txt)
Underfull \vbox (badness 10000) has occurred while \output is active []

 [13]
Overfull \vbox (57.62393pt too high) has occurred while \output is active []


[14]
! Missing $ inserted.
<inserted text> 
                $
l.4736 ...n of pycbf_test1 with write logic added}
                                                  
? 
! Missing $ inserted.
<inserted text> 
                $
l.4736 ...n of pycbf_test1 with write logic added}
                                                  
? 

Package hyperref Warning: Token not allowed in a PDFDocEncoded string,
(hyperref)                removing `subscript' on input line 4736.


Underfull \vbox (badness 10000) has occurred while \output is active []

 [15]
Underfull \vbox (badness 10000) has occurred while \output is active []

 [16]
Overfull \vbox (472.76971pt too high) has occurred while \output is active []


! Missing $ inserted.
<inserted text> 
                $
l.4854 \end{flushleft}
                      
? 
LaTeX Font Info:    External font `cmex10' loaded for size
(Font)              <7> on input line 4854.
! Missing $ inserted.
<inserted text> 
                $
l.4854 \end{flushleft}
                      
? 
[17]
Overfull \hbox (68.62576pt too wide) in paragraph at lines 4881--4881
[][][]    []\OT1/cmtt/m/n/9 print('(0, 0) v00 [ %.9f %.9f %.9f ]' %(round(v00[0
],9), round(v00[1],9), round(v00[2],9)))  
 []


Overfull \hbox (68.62576pt too wide) in paragraph at lines 4882--4882
[][][]    []\OT1/cmtt/m/n/9 print('(0, 1) v01 [ %.9g %.9g %.9g ]' %(round(v01[0
],9), round(v01[1],9), round(v01[2],9)))  
 []


Overfull \hbox (68.62576pt too wide) in paragraph at lines 4883--4883
[][][]    []\OT1/cmtt/m/n/9 print('(1, 0) v10 [ %.9g %.9g %.9g ]' %(round(v10[0
],9), round(v10[1],9), round(v10[2],9)))  
 []


Overfull \hbox (68.62576pt too wide) in paragraph at lines 4884--4884
[][][]    []\OT1/cmtt/m/n/9 print('(1, 1) v11 [ %.9g %.9g %.9g ]' %(round(v11[0
],9), round(v11[1],9), round(v11[2],9)))  
 []


Overfull \hbox (49.72598pt too wide) in paragraph at lines 4886--4886
[][][]    []\OT1/cmtt/m/n/9 print("surface axes:",  d.get_detector_surface_axes
(0), d.get_detector_surface_axes(1))  
 []


Overfull \hbox (182.02444pt too wide) in paragraph at lines 4888--4888
[][][]    []\OT1/cmtt/m/n/9 print(d.get_detector_surface_axes(0), "has", cbf.co
unt_axis_ancestors(d.get_detector_surface_axes(0)), "ancestors")  
 []


Overfull \hbox (182.02444pt too wide) in paragraph at lines 4889--4889
[][][]    []\OT1/cmtt/m/n/9 print(d.get_detector_surface_axes(1), "has", cbf.co
unt_axis_ancestors(d.get_detector_surface_axes(1)), "ancestors")  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 4898--4898
[][][]        []\OT1/cmtt/m/n/9 print("    equipment_component", cbf.get_axis_e
quipment_component(cur_axis))  
 []


Overfull \hbox (134.775pt too wide) in paragraph at lines 4900--4900
[][][]        []\OT1/cmtt/m/n/9 print("    vector [ %.8g %.8g %.8g ]" % (round(
vector[0],7), round(vector[1],7), round(vector[2],7)))  
 []


Overfull \hbox (134.775pt too wide) in paragraph at lines 4902--4902
[][][]        []\OT1/cmtt/m/n/9 print("    offset [ %.8g %.8g %.8g ]" % (round(
offset[0],7), round(offset[1],7), round(offset[2],7)))  
 []


Underfull \vbox (badness 6675) has occurred while \output is active []

 [18]
Overfull \hbox (2.47653pt too wide) in paragraph at lines 5047--5047
[][][]         []\OT1/cmtt/m/n/9 UINT32        header_major_version;     /* hea
der_major_version  (n.) */  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5048--5048
[][][]         []\OT1/cmtt/m/n/9 UINT32        header_minor_version;     /* hea
der_minor_version  (.n) */  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5085--5085
[][][]         []\OT1/cmtt/m/n/9 UINT32        background_applied; /* flags cor
rection has been applied -  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5087--5087
[][][]         []\OT1/cmtt/m/n/9 UINT32        bias_applied;       /* flags cor
rection has been applied -  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5089--5089
[][][]         []\OT1/cmtt/m/n/9 UINT32        flatfield_applied;  /* flags cor
rection has been applied -  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5091--5091
[][][]         []\OT1/cmtt/m/n/9 UINT32        distortion_applied; /* flags cor
rection has been applied -  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5110--5110
[][][]         []\OT1/cmtt/m/n/9 UINT32        pixel_noise[MAXIMAGES]; /* 1000*
base noise value (ADUs) */  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5154--5154
[][][]         []\OT1/cmtt/m/n/9 INT32 measured_bias[MAXIMAGES]; /* 1000*mean b
ias value for each image*/  
 []


Underfull \vbox (badness 10000) has occurred while \output is active []

 [19]
Overfull \vbox (3050.37395pt too high) has occurred while \output is active []


[20]
Underfull \vbox (badness 10000) has occurred while \output is active []

 [21]
Overfull \vbox (2159.37395pt too high) has occurred while \output is active []


[22]
Underfull \vbox (badness 10000) has occurred while \output is active []

 [23]
Overfull \vbox (1752.37395pt too high) has occurred while \output is active []


[24] (./pycbf.aux) ) 
Here is how much of TeX's memory you used:
 2545 strings out of 478995
 37127 string characters out of 5858210
 1501411 words of memory out of 5000000
 20043 multiletter control sequences out of 15000+600000
 410047 words of font info for 49 fonts, out of 8000000 for 9000
 1141 hyphenation exceptions out of 8191
 53i,11n,60p,220b,378s stack positions out of 5000i,500n,10000p,200000b,80000s

Output written on pycbf.dvi (24 pages, 220452 bytes).