B
    b                 @   s   d dl mZ d dlZd dlZd dlZd dlmZ d dlmZ d dlm	Z	 d dlm
Z
 d dlmZ d dlmZ d d	lmZ d d
lmZ d dlmZ d dlmZ G dd deZG dd deZdddZdd Zedkre  dS )    )print_functionN)Sorry)BusterPrinter)
CsvPrinter)ShelxPrinter)PhenixPrinter)RefmacPrinter)TuplePrinter)analyze_pdb_hierarhy)load_restraints_lib)	parse_pdbc               @   s   e Zd ZdddZdS )AllowedRestraintsConfigTc             C   s(   || _ || _|| _|| _|| _|| _d S )N)po4po4terminalnucleicacidbasesnucleicacidisobasesribose_deoxyriboseribose_deoxyribose_terminal)selfr   r   r   r   r   r    r   4lib/python3.7/site-packages/restraintlib/launcher.py__init__   s    	z AllowedRestraintsConfig.__init__N)TTTTTT)__name__
__module____qualname__r   r   r   r   r   r      s        r   c               @   s&   e Zd ZdddZdd Zdd ZdS )	RestraintLibLauncherNc             C   sB   t j| _t|tks"t|tjkr0t|d| _n|d k	r>|| _d S )Nw)sysstdout
log_streamtypestrsixZ	text_typeopen)r   r   r   r   r   r   )   s
    zRestraintLibLauncher.__init__c             C   s   d S )Nr   )r   percentZtotalr   r   r   report_progress0   s    z$RestraintLibLauncher.report_progressc             C   s   |dkrt |d}nF|dkr(t|d}n2|dkr<t|d}n|dkrPt|d}n
t|d}t }t|j|j|j|j	|j
|j}t|||| j| g S )NP)override_sigmaSCB)r   r   r   r   r   r   r   r   r   r   r   r   r   r   )r   in_pdbZprinter_coder'   Zallowed_restraints_configprinterrestraint_listZallowed_restraint_listr   r   r   produce_restraints3   s&    
z'RestraintLibLauncher.produce_restraints)N)r   r   r   r   r%   r.   r   r   r   r   r   '   s   
r   Tc          
   C   sN   yt  }t|d}t| |||S  tk
rH } ztdW d d }~X Y nX d S )N)r'   z0CDL Nucleotides error, swich off cdl_nucleotides)r   r	   r
   	Exceptionr   )Zpdb_hierarchyr'   Zrestraint_groupsr,   errr   r   r   cdl_nucleotidesN   s    
r1   c              C   s  t jdd} | jdtdddddgdd	d
 | jdddddd | jdtddd | jdtddd |  }|j }|j}|j}|j	}|dkrt
| }nb|dkrt| }nN|dkrt| }n:|dkrt| }n&|dkrt| }ntd| d S t }t||||| d S )Nz9Generate olgonucleotides restraints for pdb or mmcif file)descriptionr,   ZrefmacZphenixZshelxlZbusterZcsvzRestraint output format)r    choicesdefaulthelpz-kz--keep_orginal_sigma
store_trueFzBKeep original CSD sigma values, instead of program specific values)actionr4   r5   in_filenamezin.pdbz
Input file)r    r4   r5   out_filenamezrestraints.txtzOutput restraints filezHUnknown printer {}, should be one of refmac, phenix, shelxl, buster, csv)argparseArgumentParseradd_argumentr!   
parse_argsr,   lowerr8   r9   keep_orginal_sigmar   r   r   r   r   printformatr   r   )parserargsZprinter_namer+   r9   r?   r,   r-   r   r   r   mainW   s4    
rD   __main__)T)Z
__future__r   r:   r   r"   Zlibtbx.utilsr   Zrestraintlib.printerr   r   r   r   r   r	   Zrestraintlib.restraintsr
   r   r   objectr   r   r1   rD   r   r   r   r   r   <module>   s&   '
	!