B
    âêõbß  ã               @   s¦   d Z ddlmZ ddlmZ ddlmZmZ ddlm	Z	 ddl
mZmZmZ ddlmZ yddlmZmZ W n ek
rˆ   d	 ZZY nX d
d„ ZG dd„ deƒZd	S )z[
This package contains classes responsible for loading and dumping PyRosetta
Pose objects.
é    )Úprint_function)ÚRosettaError)Ú	AtomicNumÚMass)Ú	Structure)ÚAtomÚ
ExtraPointÚBond)Úrange)ÚPoseÚAtomIDNc             C   s:   d}x(t d| ¡ ƒD ]}||  |¡ ¡ 7 }qW || ¡  S )Néÿÿÿÿé   )r
   ÚrsdÚresidueZnatomsÚatomno)ÚposeÚnbrZpriorÚi© r   ú2lib/python3.7/site-packages/parmed/rosetta/pose.pyÚ_n_prior   s    r   c               @   s   e Zd Zedd„ ƒZdS )ÚRosettaPosec             C   s(  t rtstdƒ‚t| t ƒs"tdƒ‚tƒ }d}|  ¡ }xätd|  ¡ d ƒD ]Ì}|  	|¡}| 
¡  ¡ }t| ¡ tdƒ d ƒ}x–t| ¡ ddD ]€\}}	yR| |¡}
| |¡ ¡ }|
 ¡ rÄd}n|
 ¡ }|
 ¡ }|
 ¡ }t| }t| }W n" tk
r   td| ƒ‚Y nX t||d|ddd	|||d

}|
 ¡ rDtf |Ž}n
tf |Ž}|	 ¡ d |	 ¡ d |	 ¡ d   |_|_ |_!| "||||d	¡ |d7 }yhxb| #t||ƒ¡D ]N}| $¡ |k sØ| $¡ |krª| %¡ |k rª|j& 't(|jt)| |ƒ |ƒ¡ qªW W q’   tdƒ‚Y q’X q’W qJW | *¡  |S )zâ
        Load a :class:`Pose` object and return a populated :class:`Structure`
        instance

        Parameters
        ----------
        pose : :class:`Pose`
            PyRosetta :class:`Pose` object to convert
        z$Could not load the PyRosetta module.z&Object is not a PyRosetta Pose object.r   ÚA)ÚstartZEPz Could not recognize element: %s.g        Ú )
Úatomic_numberÚnameZchargeÚmassZ	occupancyZbfactorZaltlocZnumberÚrminÚepsilonr   é   zCould not add bonds.)+r   r   ÚImportErrorÚ
isinstanceÚ	TypeErrorr   Zconformationr
   Ztotal_residuer   Zname3ÚstripÚchrÚchainÚordÚ	enumerateZatomsZ	atom_typeZ	atom_nameZ
is_virtualÚelementZ	lj_radiusZ	lj_wdepthr   r   ÚKeyErrorr   Údictr   r   ZxyzZxxZxyZxzZadd_atomZbonded_neighbor_all_resr   r   ZbondsÚappendr	   r   Zunchange)r   ZstructZatnumZconfZresidZresZresnamer'   ZatnoZatZatinfoZatnameZatsymr   r    r   r   ZparamsZatomr   r   r   r   Úload   s^    





.
zRosettaPose.loadN)Ú__name__Ú
__module__Ú__qualname__Ústaticmethodr.   r   r   r   r   r      s   r   )Ú__doc__Z
__future__r   Zparmed.exceptionsr   Zparmed.periodic_tabler   r   Zparmed.structurer   Zparmed.topologyobjectsr   r   r	   Zparmed.utils.six.movesr
   Z	pyrosettar   r   r"   r   Úobjectr   r   r   r   r   Ú<module>   s   