B bT@s:dZddlmZGdddZddZGdddeZd S) aqHandle the SCOP CLAssification file, which describes SCOP domains. The file format is described in the scop "release notes.":http://scop.mrc-lmb.cam.ac.uk/scop/release-notes.html The latest CLA file can be found "elsewhere at SCOP.":http://scop.mrc-lmb.cam.ac.uk/scop/parse/ "Release 1.73": http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.cla.scop.txt_1.73 (July 2008) )Residuesc@s*eZdZdZd ddZddZddZdS) RecordaLHolds information for one SCOP domain. Attributes: - sid - SCOP identifier. e.g. d1danl2 - residues - The domain definition as a Residues object - sccs - SCOP concise classification strings. e.g. b.1.2.1 - sunid - SCOP unique identifier for this domain - hierarchy - A dictionary, keys are nodetype, values are sunid, describing the location of this domain in the SCOP hierarchy. See the Scop module for a description of nodetypes. This used to be a list of (key,value) tuples in older versions of Biopython (see Bug 3109). NcCs0d|_d|_d|_d|_i|_|r,||dS)zInitialize the class.N)sidresiduessccssunid hierarchy_process)selfliner +lib/python3.7/site-packages/Bio/SCOP/Cla.py__init__'szRecord.__init__c Cs|}|d}t|dkr*td||\|_}}|_|_}t||_||j_ t |j|_x.|dD] }|d\}}t ||j |<qlWdS)N z#I don't understand the format of %s,=) rstripsplitlen ValueErrorrrrrrpdbidintr ) r r columnsrrr Zhtkeyvaluer r rr 1s     zRecord._processcCspg}||j|t|jd7}||j||j|ddd|j Ddt t|dS)zCRepresent the SCOP classification record as a tab-separated string. rcss$|]\}}d|t|fVqdS)rN)joinstr).0rrr r r Jsz!Record.__str__..r ) appendrrrrrrrr itemsmap)r sr r r__str__@s   zRecord.__str__)N)__name__ __module__ __qualname____doc__rr r'r r r rrs rccs(x"|D]}|drqt|VqWdS)zmIterate over a CLA file as Cla records for each line. Arguments: - handle - file-like object. #N) startswithr)Zhandler r r rparseQs  r.c@s eZdZdZddZddZdS)Indexz?A CLA file indexed by SCOP identifiers for rapid random access.c Cstt|||_t|jP}d}xD|}|s0P|drs :