B b{@s8dZddlmZGdddejZGdddejZdS)zrClasses corresponding to NeXML trees. See classes in ``Bio.Nexus``: Trees.Tree, Trees.NodeData, and Nodes.Chain. )BaseTreec@seZdZdZdddZdS)TreezNeXML Tree object.NF?cCs&tjj||pt|||d||_dS)z:Instantiate a NeXML tree object with the given parameters.)rootrootedidnameN)rr__init__Cladeweight)selfrrrrr r .lib/python3.7/site-packages/Bio/Phylo/NeXML.pyr sz Tree.__init__)NFNNr)__name__ __module__ __qualname____doc__r r r r rrsrc@seZdZdZdddZdS)r zNeXML Clade (sub-tree) object.?Nc KsBtjj|||||d||_x |D]\}}t|||q&WdS)z-Initialize parameters for NeXML Clade object.) branch_lengthrclades confidenceN)rr r commentitemssetattr) r rrrrrkwargskeyvaluer r rr s zClade.__init__)rNNNN)rrrrr r r r rr s r N)rZ Bio.Phylorrr r r r r s