logFile leap.log
#
# ----- leaprc for loading the Lipid 11 force field
#       of Skjevik, Teigen and Walker.
#       
#       Note this file is designed to be used in addition
#       to one of the standard protein force field leaprc files
#       even if you are running a pure lipid.
#
#       For example, you would enter in leap:
#         source leaprc.ff12SB
#         source leaprc.lipid11
#
#	load atom type hybridizations
#
addAtomTypes {
	{ "cA"  "C" "sp3" }
	{ "cB"  "C" "sp2" }
	{ "cC"  "C" "sp2" }
	{ "cR"  "C" "sp3" }
	{ "cP"  "C" "sp3" }
	{ "oC"  "O" "sp2" }
	{ "oS"  "O" "sp3" }
	{ "oH"  "O" "sp3" }
	{ "oR"  "O" "sp3" }
        { "oT"  "O" "sp3" }
        { "oP"  "O" "sp2" }
        { "oO"  "O" "sp2" }
	{ "nA"  "N" "sp3" }
	{ "pA"  "P" "sp3" }
	{ "hA"  "H" "sp3" }
	{ "hE"  "H" "sp3" }
	{ "hX"  "H" "sp3" }
	{ "hB"  "H" "sp3" }
	{ "hN"  "H" "sp3" }
	{ "hO"  "H" "sp3" }
	{ "hR"  "H" "sp3" }
	{ "hS"  "H" "sp3" }
}
#
#	Load the Lipid 11 parameter set.
#
lipid11 = loadamberparams lipid11.dat

#       Load the Lipid 11 master lib file.
loadoff lipid11.lib