#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing3960070 reads
ln -s . hg19
echo MT3R19-lq-iP2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MT3R19-lq-iP2.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.589257
echo MT3R20-lq-iP4.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MT3R20-lq-iP4.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 1
echo MT3R21-lq-iP7.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MT3R21-lq-iP7.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.619958
echo MT3R22-iP13.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MT3R22-iP13.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.828762
echo MT3R24-hD10.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MT3R24-hD10.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.727169