]0;/data/results/tools/align/mosaik/MOSAIK/testreczko@max:/data/results/tools/align/mosaik/MOSAIK/test$ samtools view -F 4 r374c.bam  | awk -v th=20 -f sam2aligned-fasta1.awk > r374.fa
MQ cutoff20
Passed 81161 mappings  of 115834  70.0666 %
0 1.25697 1456
1 1.11798 1295
2 7.98039 9244
3 1.70934 1980
4 1.5997 1853
5 1.24402 1441
6 0.688054 797
7 2.0443 2368
8 1.67913 1945
9 0.283164 328
10 0.361725 419
11 0.431652 500
12 0.360861 418
13 0.604313 700
14 0.683737 792
15 1.12316 1301
16 1.27251 1474
17 1.59539 1848
18 1.46934 1702
19 2.42761 2812
20 1.95366 2263
21 2.36373 2738
22 1.46071 1692
23 0.949635 1100
24 0.872801 1011
25 1.21122 1403
26 1.49783 1735
27 4.68343 5425
28 8.63822 10006
29 4.17235 4833
30 4.94414 5727
31 7.84312 9085
32 8.80484 10199
33 15.3763 17811
34 5.14443 5959
35 0.149352 173
36 0.000863304 1
]0;/data/results/tools/align/mosaik/MOSAIK/testreczko@max:/data/results/tools/align/mosaik/MOSAIK/test$ samtools view -F 4 r375c.bam  | awk -v th=20 -f sam2aligned-fasta1.awk > r375.fa
MQ cutoff20
Passed 101173 mappings  of 146713  68.9598 %
0 1.2855 1886
1 1.41024 2069
2 8.41575 12347
3 1.67606 2459
4 1.62017 2377
5 1.18872 1744
6 0.751808 1103
7 1.94325 2851
8 1.44704 2123
9 0.326488 479
10 0.383742 563
11 0.424639 623
12 0.460764 676
13 0.695235 1020
14 0.841098 1234
15 1.32367 1942
16 1.59154 2335
17 1.79534 2634
18 1.49544 2194
19 1.9637 2881
20 1.5636 2294
21 1.9971 2930
22 1.31481 1929
23 0.927661 1361
24 0.968558 1421
25 1.2487 1832
26 1.5561 2283
27 4.96343 7282
28 8.91809 13084
29 4.60355 6754
30 5.25243 7706
31 7.29656 10705
32 8.8179 12937
33 14.2625 20925
34 5.10316 7487
35 0.165629 243
]0;/data/results/tools/align/mosaik/MOSAIK/testreczko@max:/data/results/tools/align/mosaik/MOSAIK/test$