#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing2282534 reads
ln -s . hg19
echo YK3R12-Cplus-shorthuh75.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh YK3R12-Cplus-shorthuh75.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 1
echo YK3R13-vectorhuh75.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh YK3R13-vectorhuh75.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.977907