#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing1958917 reads

echo PVC1-GFPBrm1.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC1-GFPBrm1.m2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 1.0
echo PVC2-GFPBrm2.bam
echo PVC3-GFPK804R1.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC3-GFPK804R1.m2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.6785531790064236
echo PVC5-S2mock1.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC5-S2mock1.m2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.6672869620837482
echo PVC6-S2mock2.bam

/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC7-InputBrm.m.bam  /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.5541320895905971







echo PVC7-InputBrm.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC7-InputBrm.m.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.5541320895905971