#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
ln -s . dm6
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC1-GFPBrm1.m2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC3-GFPK804R1.m2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC5-S2mock1.m2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai