#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
ln -s . dm6
echo PVC1-GFPBrm1.m.bam 498300564
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC1-GFPBrm1.m.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC2-GFPBrm2.m.bam 569367347
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC2-GFPBrm2.m.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC3-GFPK804R1.m.bam 515572412
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC3-GFPK804R1.m.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC4-GFPK804R2.m.bam 973143257
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC4-GFPK804R2.m.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC5-S2mock1.m.bam 1069717155
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC5-S2mock1.m.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC6-S2mock2.m.bam 450511446
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC6-S2mock2.m.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC7-InputBrm.m.bam 1941327643
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC7-InputBrm.m.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai