#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing1958917 reads
ln -s . mm10
echo PVC1-GFPBrm1.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC1-GFPBrm1.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.81347
echo PVC2-GFPBrm2.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC2-GFPBrm2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo PVC3-GFPK804R1.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC3-GFPK804R1.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.995998
echo PVC4-GFPK804R2.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC4-GFPK804R2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.624554
echo PVC5-S2mock1.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC5-S2mock1.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.624402
echo PVC6-S2mock2.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC6-S2mock2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.920647
echo PVC7-InputBrm.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig-add-chr1.sh PVC7-InputBrm.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.487916