#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
ln -s . dm6
echo PVC1-GFPBrm1.bam 2408101
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC1-GFPBrm1.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC2-GFPBrm2.bam 1958917
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC2-GFPBrm2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC3-GFPK804R1.bam 1966789
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC3-GFPK804R1.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC4-GFPK804R2.bam 3136503
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC4-GFPK804R2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC5-S2mock1.bam 3137269
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC5-S2mock1.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC6-S2mock2.bam 2127761
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC6-S2mock2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai
echo PVC7-InputBrm.bam 4014868
/data/results/tools/proton/tophat2unstranded-bigwig-add-chr1.sh PVC7-InputBrm.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai