> [1] "DSt3R1.1A.UntrPMNs.bam" "DSt3R2.1B.PMNsIRAplasma.bam" [3] "DSt3R5.3A.UntrPMNs.bam" "DSt3R6.3B.PMNsIRAplasma.bam" [5] "DSt3R9.4A.UntrPMNs.bam" "DSt3R10.4B.PMNsIRAplasma.bam" > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 27587 ENSG00000183154 6.239867 7.829376 23.617419 1.176656e-06 0.07119242 51264 ENSG00000141376 -3.319671 6.513929 13.197108 2.804973e-04 1.00000000 34367 ENSG00000152404 2.367089 8.545882 12.506068 4.057839e-04 1.00000000 45761 ENSG00000259361 -2.330918 10.599207 12.112991 5.008939e-04 1.00000000 4535 ENSG00000203710 -2.193722 10.871142 12.053658 5.170887e-04 1.00000000 51763 ENSG00000204282 -1.773803 12.406546 10.843504 9.917134e-04 1.00000000 21884 ENSG00000281593 3.279640 5.870515 10.689826 1.077564e-03 1.00000000 29521 ENSG00000147872 -1.768021 10.617631 10.333176 1.306944e-03 1.00000000 54673 ENSG00000282416 -2.981894 7.065835 10.310739 1.322928e-03 1.00000000 51632 ENSG00000125450 -1.684499 11.771297 9.783054 1.761693e-03 1.00000000 > conditionUntrPMNs Down 0 NotSig 60504 Up 0 > [1] "DSt3R13.5E.UntrPMNs.bam" "DSt3R14.5F.PMNspolyP.bam" [3] "DSt3R19.6E.UntrPMNs.bam" "DSt3R20.6F.PMNspolyP.bam" [5] "DSt3R25.8E.UntrPMNs.bam" "DSt3R26.8F.PMNspolyP.bam" > > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 1627 ENSG00000085840 3.488586 7.233940 28.88316 7.701990e-08 0.004222192 12174 ENSG00000268220 3.241995 7.050804 27.73212 1.395674e-07 0.004222192 47500 ENSG00000140678 1.457215 11.293356 26.45990 2.694844e-07 0.005434960 59129 ENSG00000100360 4.099637 5.789185 23.76273 1.091100e-06 0.016503972 8730 ENSG00000003393 1.359214 11.359208 23.10981 1.531914e-06 0.018537389 57544 ENSG00000083844 7.703619 4.595103 22.13266 2.547238e-06 0.025686353 43750 ENSG00000185215 2.778616 6.587736 21.41902 3.694736e-06 0.031935189 54549 ENSG00000199017 4.145691 5.745654 20.55896 5.787774e-06 0.043772937 21003 ENSG00000278899 3.065986 6.109535 19.47598 1.019604e-05 0.068544587 17844 ENSG00000145850 7.197569 4.202491 18.13590 2.058412e-05 0.124542144 > conditionUntrPMNs Down 0 NotSig 60496 Up 8 > [1] "DSt3R1.1A.UntrPMNs.bam" "DSt3R3.1C.PMNsIRAplasmaTIC.bam" [3] "DSt3R5.3A.UntrPMNs.bam" "DSt3R7.3C.PMNsIRAplasmaTIC.bam" [5] "DSt3R9.4A.UntrPMNs.bam" "DSt3R11.4C.PMNsIRAplasmaTIC.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 4535 ENSG00000203710 -2.692180 11.158953 27.08862 1.946553e-07 0.01177743 45761 ENSG00000259361 -2.637042 10.795201 21.06168 4.451786e-06 0.13467543 29521 ENSG00000147872 -1.912315 10.610152 16.15767 5.831720e-05 1.00000000 54673 ENSG00000282416 -3.106053 7.280429 15.05114 1.046927e-04 1.00000000 51694 ENSG00000161542 -2.846899 7.056054 14.51548 1.390814e-04 1.00000000 15254 ENSG00000154556 -1.858017 11.241235 13.80629 2.027475e-04 1.00000000 18565 ENSG00000078401 -3.345470 6.246397 12.90074 3.285822e-04 1.00000000 18570 ENSG00000112137 -1.521752 13.170170 12.61126 3.835758e-04 1.00000000 28679 ENSG00000176406 1.654508 10.387992 11.68786 6.293007e-04 1.00000000 49917 ENSG00000109101 6.447085 5.290038 10.90038 9.617233e-04 1.00000000 > conditionUntrPMNs Down 1 NotSig 60503 Up 0 > [1] "DSt3R1.1A.UntrPMNs.bam" "DSt3R4.1D.PMNsIRAplasmaIL29.bam" [3] "DSt3R5.3A.UntrPMNs.bam" "DSt3R8.3D.PMNsIRAplasmaIL29.bam" [5] "DSt3R9.4A.UntrPMNs.bam" "DSt3R12.4D.PMNsIRAplasmaIL29.bam" > conditionUntrPMNs Down 2 NotSig 60489 Up 13 > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 31384 ENSG00000125485 5.278138 9.755443 82.30510 1.174593e-19 7.106759e-15 27587 ENSG00000183154 5.277596 7.870948 54.04844 1.962206e-13 5.936066e-09 32109 ENSG00000273725 5.547419 7.324226 48.03604 4.194962e-12 7.951914e-08 44856 ENSG00000224055 4.259565 8.543871 47.59346 5.257116e-12 7.951914e-08 33393 ENSG00000014138 4.325320 8.208144 45.30700 1.688188e-11 2.042842e-07 18142 ENSG00000122203 4.466324 7.784542 41.69408 1.069324e-10 1.078307e-06 10058 ENSG00000144674 4.064183 7.482438 33.29495 7.928417e-09 6.852871e-05 52181 ENSG00000101745 2.530840 11.461664 30.46848 3.396814e-08 2.569010e-04 34367 ENSG00000152404 2.974892 8.590937 26.84598 2.205081e-07 1.482402e-03 4535 ENSG00000203710 -2.253094 11.097146 23.81862 1.059208e-06 6.408633e-03 45609 ENSG00000140398 2.266942 10.120518 21.70010 3.189445e-06 1.754311e-02 29521 ENSG00000147872 -2.136304 10.819255 20.98289 4.636341e-06 2.337643e-02 42728 ENSG00000258703 2.516063 8.627230 20.18694 7.026317e-06 3.270156e-02 21200 ENSG00000146477 4.112611 6.124959 19.80139 8.595826e-06 3.714870e-02 32222 ENSG00000152270 4.320558 5.972915 19.51462 9.987570e-06 4.028586e-02 13047 ENSG00000038219 2.664525 7.903527 18.81854 1.438211e-05 5.438593e-02 28679 ENSG00000176406 2.048295 10.385002 18.54482 1.660212e-05 5.908794e-02 52316 ENSG00000177150 -2.125448 9.236517 16.61542 4.579194e-05 1.539220e-01 23859 ENSG00000236279 2.378153 8.023410 15.88849 6.720563e-05 2.140110e-01 12435 ENSG00000073792 3.995570 5.766482 15.49111 8.291749e-05 2.508420e-01 > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 4535 ENSG00000203710 -2.614422 11.097325 38.49788 5.498996e-10 3.327112e-05 45761 ENSG00000259361 -2.750681 10.919715 37.05929 1.149344e-09 3.476996e-05 29521 ENSG00000147872 -2.110790 10.819475 29.33986 6.084896e-08 1.227202e-03 15254 ENSG00000154556 -1.961912 11.330939 24.10346 9.141486e-07 1.382741e-02 52316 ENSG00000177150 -2.152552 9.237086 22.95025 1.664451e-06 1.918687e-02 27587 ENSG00000183154 4.631081 7.864773 22.69308 1.902705e-06 1.918687e-02 18570 ENSG00000112137 -1.595029 13.193909 21.24106 4.054077e-06 3.504113e-02 54673 ENSG00000282416 -3.152788 7.276502 18.88612 1.388718e-05 1.050288e-01 28679 ENSG00000176406 1.660860 10.384449 17.08888 3.569456e-05 2.399627e-01 34367 ENSG00000152404 2.012950 8.588112 14.56628 1.353819e-04 7.456383e-01 > conditionUntrPMNs Down 6 NotSig 60497 Up 1 > [1] "DSt3R2.1B.PMNsIRAplasma.bam" "DSt3R3.1C.PMNsIRAplasmaTIC.bam" [3] "DSt3R6.3B.PMNsIRAplasma.bam" "DSt3R7.3C.PMNsIRAplasmaTIC.bam" [5] "DSt3R10.4B.PMNsIRAplasma.bam" "DSt3R11.4C.PMNsIRAplasmaTIC.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 59346 ENSG00000198951 1.4239747 8.657030 18.582683 1.628201e-05 0.9851269 54736 ENSG00000064932 1.3277310 10.564789 16.617173 4.576422e-05 1.0000000 29863 ENSG00000185972 4.7233547 4.332991 16.123113 5.939099e-05 1.0000000 36738 ENSG00000213341 1.4223671 7.607524 14.462252 1.430668e-04 1.0000000 31641 ENSG00000177963 1.1816692 8.982540 13.530190 2.348579e-04 1.0000000 22013 ENSG00000086288 1.3104270 6.455332 9.477593 2.080432e-03 1.0000000 9260 ENSG00000173692 -1.8640383 5.153968 9.246294 2.360229e-03 1.0000000 46284 ENSG00000185418 -2.1869837 4.845930 9.093647 2.565520e-03 1.0000000 3642 ENSG00000158864 -1.0928304 7.576833 9.086320 2.575818e-03 1.0000000 33135 ENSG00000110107 0.9480331 10.658177 8.896896 2.857128e-03 1.0000000 > conditionUntrPMNs Down 0 NotSig 60504 Up 0 > [1] "DSt3R2.1B.PMNsIRAplasma.bam" "DSt3R4.1D.PMNsIRAplasmaIL29.bam" [3] "DSt3R6.3B.PMNsIRAplasma.bam" "DSt3R8.3D.PMNsIRAplasmaIL29.bam" [5] "DSt3R10.4B.PMNsIRAplasma.bam" "DSt3R12.4D.PMNsIRAplasmaIL29.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 9517 ENSG00000176720 2.571148 5.681242 13.70188 0.0002143344 1 55711 ENSG00000105662 2.888369 5.267185 13.37805 0.0002546940 1 58959 ENSG00000185339 -1.495621 7.414882 12.63276 0.0003791904 1 36738 ENSG00000213341 1.544598 7.590109 12.55279 0.0003957639 1 3642 ENSG00000158864 -1.448990 7.728109 12.35359 0.0004402994 1 31641 ENSG00000177963 1.243062 8.955418 11.78431 0.0005975204 1 45581 ENSG00000178802 1.424733 8.190990 11.71496 0.0006202026 1 13274 ENSG00000174123 -1.230808 8.661648 11.36289 0.0007494944 1 51763 ENSG00000204282 1.076817 12.568759 11.32104 0.0007665752 1 36296 ENSG00000151208 6.948713 4.455806 11.16446 0.0008340440 1 > conditionUntrPMNs Down 0 NotSig 60504 Up 0 > [1] "DSt3R13.5E.UntrPMNs.bam" "DSt3R14.5F.PMNspolyP.bam" [3] "DSt3R19.6E.UntrPMNs.bam" "DSt3R20.6F.PMNspolyP.bam" [5] "DSt3R25.8E.UntrPMNs.bam" "DSt3R26.8F.PMNspolyP.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 1627 ENSG00000085840 3.488586 7.233940 28.88316 7.701990e-08 0.004222192 12174 ENSG00000268220 3.241995 7.050804 27.73212 1.395674e-07 0.004222192 47500 ENSG00000140678 1.457215 11.293356 26.45990 2.694844e-07 0.005434960 59129 ENSG00000100360 4.099637 5.789185 23.76273 1.091100e-06 0.016503972 8730 ENSG00000003393 1.359214 11.359208 23.10981 1.531914e-06 0.018537389 57544 ENSG00000083844 7.703619 4.595103 22.13266 2.547238e-06 0.025686353 43750 ENSG00000185215 2.778616 6.587736 21.41902 3.694736e-06 0.031935189 54549 ENSG00000199017 4.145691 5.745654 20.55896 5.787774e-06 0.043772937 21003 ENSG00000278899 3.065986 6.109535 19.47598 1.019604e-05 0.068544587 17844 ENSG00000145850 7.197569 4.202491 18.13590 2.058412e-05 0.124542144 > conditionUntrPMNs Down 0 NotSig 60496 Up 8 > [1] "DSt3R13.5E.UntrPMNs.bam" "DSt3R15.5G.PMNspolyPTIC.bam" [3] "DSt3R19.6E.UntrPMNs.bam" "DSt3R21.6G.PMNspolyPTIC.bam" [5] "DSt3R25.8E.UntrPMNs.bam" "DSt3R27.8G.PMNspolyPTIC.bam" > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 1627 ENSG00000085840 4.512519 7.202603 31.69717 1.805825e-08 0.001092597 59129 ENSG00000100360 4.916282 5.736843 24.30536 8.231847e-07 0.024902983 6899 ENSG00000163586 6.957296 3.986830 14.70143 1.260143e-04 1.000000000 55854 ENSG00000271182 3.962376 4.813417 13.04024 3.049928e-04 1.000000000 15650 ENSG00000252908 2.645100 7.010481 12.26724 4.611464e-04 1.000000000 7233 ENSG00000071054 4.164131 4.683101 11.81704 5.871094e-04 1.000000000 46623 ENSG00000140993 2.994358 5.144701 11.79988 5.925433e-04 1.000000000 55740 ENSG00000167491 4.365728 4.632999 11.04593 8.890854e-04 1.000000000 56834 ENSG00000178928 3.508971 4.553039 10.72562 1.056920e-03 1.000000000 44818 ENSG00000159495 2.660879 5.583632 10.49386 1.198039e-03 1.000000000 > conditionUntrPMNs Down 0 NotSig 60502 Up 2 > [1] "DSt3R13.5E.UntrPMNs.bam" "DSt3R16.5H.PMNspolyPIL29.bam" [3] "DSt3R19.6E.UntrPMNs.bam" "DSt3R22.6H.PMNspolyPIL29.bam" [5] "DSt3R25.8E.UntrPMNs.bam" "DSt3R28.8H.PMNspolyPIL29.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 55854 ENSG00000271182 6.502606 4.764294 23.517668 1.239253e-06 0.07497974 56487 ENSG00000197838 2.613304 6.847942 12.470545 4.135732e-04 1.00000000 2524 ENSG00000134183 6.722989 3.499832 11.223788 8.078015e-04 1.00000000 45515 ENSG00000260898 2.309531 6.549544 10.248244 1.368501e-03 1.00000000 17523 ENSG00000279047 3.593784 5.120869 10.093116 1.488616e-03 1.00000000 21003 ENSG00000278899 2.287780 6.128051 9.797549 1.747861e-03 1.00000000 5287 ENSG00000228982 5.436616 3.910725 9.492789 2.063273e-03 1.00000000 19089 ENSG00000204564 -5.821721 3.131463 9.272827 2.326284e-03 1.00000000 57178 ENSG00000167766 5.567217 3.070977 8.887106 2.872487e-03 1.00000000 59129 ENSG00000100360 2.445583 5.823495 8.846451 2.937172e-03 1.00000000 > conditionUntrPMNs Down 0 NotSig 60504 Up 0 > [1] "DSt3R13.5E.UntrPMNs.bam" "DSt3R17.5I.PMNsTIC.bam" [3] "DSt3R19.6E.UntrPMNs.bam" "DSt3R23.6I.PMNsTIC.bam" [5] "DSt3R25.8E.UntrPMNs.bam" "DSt3R29.8I.PMNsTIC.bam" > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 3003 ENSG00000234283 8.271802 4.847857 21.95489 2.794374e-06 0.1690708 33393 ENSG00000014138 2.403477 12.108808 18.51433 1.687638e-05 0.3579581 17523 ENSG00000279047 6.574684 5.012217 18.41826 1.774881e-05 0.3579581 3626 ENSG00000158773 7.269909 4.051413 16.73851 4.292913e-05 0.6493460 43409 ENSG00000258595 6.177437 4.680102 14.47668 1.419753e-04 1.0000000 10269 ENSG00000012223 6.963302 3.803714 14.30394 1.556136e-04 1.0000000 53872 ENSG00000229188 7.005018 3.825286 13.28862 2.671339e-04 1.0000000 53902 ENSG00000125971 7.005018 3.825286 13.28862 2.671339e-04 1.0000000 49322 ENSG00000265749 4.505027 5.226796 12.95415 3.193411e-04 1.0000000 5388 ENSG00000185220 7.198199 3.977057 12.75654 3.549048e-04 1.0000000 > conditionUntrPMNs Down 0 NotSig 60504 Up 0 > [1] "DSt3R13.5E.UntrPMNs.bam" "DSt3R18.5J.PMNsIL29.bam" [3] "DSt3R19.6E.UntrPMNs.bam" "DSt3R24.6J.PMNsIL29.bam" [5] "DSt3R25.8E.UntrPMNs.bam" "DSt3R30.8J.PMNsIL29.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 15650 ENSG00000252908 9.873616 6.890366 36.272949 1.720205e-09 0.0001040793 43409 ENSG00000258595 7.438233 4.749023 12.122574 4.983265e-04 1.0000000000 3626 ENSG00000158773 6.783346 4.162896 11.467363 7.085161e-04 1.0000000000 54738 ENSG00000267736 7.269010 4.615018 11.235872 8.025595e-04 1.0000000000 17523 ENSG00000279047 5.666001 5.085866 11.121850 8.534228e-04 1.0000000000 19772 ENSG00000218713 7.195434 4.557594 10.866386 9.795359e-04 1.0000000000 45515 ENSG00000260898 3.306625 6.475074 9.859180 1.690271e-03 1.0000000000 43389 ENSG00000260711 -3.028993 4.866181 9.333848 2.250084e-03 1.0000000000 15758 ENSG00000251593 3.820471 7.141800 9.122025 2.526029e-03 1.0000000000 6899 ENSG00000163586 6.542374 4.056019 8.997681 2.703774e-03 1.0000000000 > conditionUntrPMNs Down 0 NotSig 60503 Up 1 > [1] "DSt3R14.5F.PMNspolyP.bam" "DSt3R15.5G.PMNspolyPTIC.bam" [3] "DSt3R20.6F.PMNspolyP.bam" "DSt3R21.6G.PMNspolyPTIC.bam" [5] "DSt3R26.8F.PMNspolyP.bam" "DSt3R27.8G.PMNspolyPTIC.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 51763 ENSG00000204282 -0.9779787 12.801133 13.874127 0.0001955597 1 42714 ENSG00000177350 -1.3935868 6.743817 12.633208 0.0003790986 1 19041 ENSG00000204625 -2.0271616 5.807755 12.578777 0.0003902992 1 41332 ENSG00000136160 3.7765419 3.823601 11.327659 0.0007638483 1 15877 ENSG00000113460 2.7334846 4.290067 11.254060 0.0007947342 1 19415 ENSG00000281304 -2.5571661 4.383630 10.144730 0.0014475103 1 22912 ENSG00000075303 -1.0987763 7.467009 10.026038 0.0015438096 1 7853 ENSG00000226806 1.2447533 6.286211 9.115793 0.0025346483 1 47337 ENSG00000279583 -4.3962066 3.770815 8.746883 0.0031019159 1 9794 ENSG00000206561 -2.8998484 3.895152 8.652123 0.0032674228 1 > conditionUntrPMNs Down 0 NotSig 60504 Up 0 > [1] "DSt3R14.5F.PMNspolyP.bam" "DSt3R16.5H.PMNspolyPIL29.bam" [3] "DSt3R20.6F.PMNspolyP.bam" "DSt3R22.6H.PMNspolyPIL29.bam" [5] "DSt3R26.8F.PMNspolyP.bam" "DSt3R28.8H.PMNspolyPIL29.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 8730 ENSG00000003393 -1.2859296 10.412883 27.90988 1.273186e-07 0.007703282 1627 ENSG00000085840 -3.1786527 6.542566 25.06570 5.548728e-07 0.016786012 4535 ENSG00000203710 1.0822456 11.057875 23.59782 1.188700e-06 0.023973695 55014 ENSG00000088247 -1.1613970 8.580465 17.08547 3.575861e-05 0.540884731 23084 ENSG00000196367 0.7611362 13.156353 15.61915 7.751008e-05 0.818041523 54935 ENSG00000214456 -1.0967376 8.784445 15.38481 8.773857e-05 0.818041523 46833 ENSG00000153066 -0.9341705 10.555000 15.24169 9.464317e-05 0.818041523 52082 ENSG00000118680 0.8171296 11.626666 14.48490 1.413567e-04 1.000000000 8649 ENSG00000236653 -6.2470830 3.658196 13.14030 2.891295e-04 1.000000000 18168 ENSG00000113761 0.9006532 9.474076 12.71334 3.631970e-04 1.000000000 > conditionUntrPMNs Down 2 NotSig 60501 Up 1 > [1] "DSt3R14.5F.PMNspolyP.bam" "DSt3R17.5I.PMNsTIC.bam" [3] "DSt3R20.6F.PMNspolyP.bam" "DSt3R23.6I.PMNsTIC.bam" [5] "DSt3R26.8F.PMNspolyP.bam" "DSt3R29.8I.PMNsTIC.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 1627 ENSG00000085840 -3.267768 6.998241 21.60513 3.353076e-06 0.2028745 3003 ENSG00000234283 7.322970 4.283601 19.26075 1.141230e-05 0.3452449 23084 ENSG00000196367 1.427358 12.872808 17.95370 2.265116e-05 0.4568286 33393 ENSG00000014138 1.898445 10.986564 16.84954 4.048963e-05 0.6124461 42714 ENSG00000177350 -1.962971 7.082445 15.13627 1.000764e-04 1.0000000 6366 ENSG00000162929 1.980169 6.786216 13.45139 2.449289e-04 1.0000000 3005 ENSG00000231196 5.108129 4.405170 13.10783 2.941845e-04 1.0000000 43094 ENSG00000258891 1.693421 6.994211 12.19812 4.785481e-04 1.0000000 57544 ENSG00000083844 -6.077120 3.505923 12.09927 5.045936e-04 1.0000000 10307 ENSG00000173473 2.821695 4.581303 11.74353 6.107548e-04 1.0000000 > conditionUntrPMNs Down 0 NotSig 60504 Up 0 > [1] "DSt3R14.5F.PMNspolyP.bam" "DSt3R18.5J.PMNsIL29.bam" [3] "DSt3R20.6F.PMNspolyP.bam" "DSt3R24.6J.PMNsIL29.bam" [5] "DSt3R26.8F.PMNspolyP.bam" "DSt3R30.8J.PMNsIL29.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 15758 ENSG00000251593 4.117654 6.138270 21.059321 4.457278e-06 0.2696831 15650 ENSG00000252908 7.081167 4.714332 18.187201 2.003715e-05 0.6061639 37476 ENSG00000139192 -1.725019 8.239464 16.617439 4.575778e-05 0.9228430 44856 ENSG00000224055 1.985365 8.537372 13.737969 2.102562e-04 1.0000000 19415 ENSG00000281304 -3.183761 4.763625 13.225755 2.762430e-04 1.0000000 23084 ENSG00000196367 1.241070 12.925798 12.900744 3.285817e-04 1.0000000 43409 ENSG00000258595 6.339056 4.194284 10.568432 1.150667e-03 1.0000000 42714 ENSG00000177350 -1.652951 6.897864 10.179781 1.420253e-03 1.0000000 18168 ENSG00000113761 1.223140 9.335122 10.126401 1.461974e-03 1.0000000 55030 ENSG00000125735 -1.117319 11.917347 9.704695 1.838408e-03 1.0000000 > conditionUntrPMNs Down 0 NotSig 60504 Up 0 > [1] "DSt3R15.5G.PMNspolyPTIC.bam" "DSt3R17.5I.PMNsTIC.bam" [3] "DSt3R21.6G.PMNspolyPTIC.bam" "DSt3R23.6I.PMNsTIC.bam" [5] "DSt3R27.8G.PMNspolyPTIC.bam" "DSt3R29.8I.PMNsTIC.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 1627 ENSG00000085840 -4.659411 6.979666 50.92721 9.639034e-13 5.832001e-08 33393 ENSG00000014138 1.544919 10.325521 23.13688 1.510502e-06 4.569570e-02 3003 ENSG00000234283 7.449841 4.268456 22.15456 2.518356e-06 5.079019e-02 3005 ENSG00000231196 5.590009 4.589848 20.85778 4.951646e-06 7.489860e-02 45761 ENSG00000259361 -1.313345 11.293757 19.08585 1.250717e-05 1.513468e-01 49334 ENSG00000185156 2.020187 6.718526 18.44878 1.746685e-05 1.761358e-01 34367 ENSG00000152404 1.468966 8.335647 17.59158 2.739930e-05 2.368239e-01 39666 ENSG00000187855 6.472288 3.579440 16.80552 4.143961e-05 3.134078e-01 10307 ENSG00000173473 2.900745 4.644404 15.90768 6.654732e-05 4.473754e-01 50640 ENSG00000198496 1.779069 6.592967 15.55006 8.039451e-05 4.864190e-01 > conditionUntrPMNs Down 1 NotSig 60502 Up 1 > [1] "DSt3R15.5G.PMNspolyPTIC.bam" "DSt3R18.5J.PMNsIL29.bam" [3] "DSt3R21.6G.PMNspolyPTIC.bam" "DSt3R24.6J.PMNsIL29.bam" [5] "DSt3R27.8G.PMNspolyPTIC.bam" "DSt3R30.8J.PMNsIL29.bam" > > > > > Coefficient: conditionUntrPMNs genes logFC logCPM F PValue FDR 15758 ENSG00000251593 3.9817890 5.862337 23.19648 1.464415e-06 0.08860295 44856 ENSG00000224055 1.9526329 8.400227 16.19076 5.730758e-05 1.00000000 37476 ENSG00000139192 -1.4908292 8.450510 15.78159 7.113216e-05 1.00000000 15650 ENSG00000252908 6.5014962 4.127097 15.30501 9.152362e-05 1.00000000 3005 ENSG00000231196 4.7554940 4.721338 14.42300 1.460792e-04 1.00000000 55030 ENSG00000125735 -1.0960380 11.960639 12.96553 3.174061e-04 1.00000000 31651 ENSG00000185201 -0.8777237 16.482325 12.69156 3.674516e-04 1.00000000 31644 ENSG00000185627 1.1971725 9.468943 12.14709 4.918189e-04 1.00000000 56748 ENSG00000268401 0.9298688 12.824563 11.48850 7.005034e-04 1.00000000 50645 ENSG00000188554 2.5954571 4.949554 11.36992 7.466646e-04 1.00000000 > conditionUntrPMNs Down 0 NotSig 60504 Up 0 >