#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing2486716 reads
ln -s . hg19
echo AK3R1_A1.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh AK3R1_A1.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.609811
echo AK3R2_A2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh AK3R2_A2.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.952928
echo AK3R3_A3.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh AK3R3_A3.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 1
echo AK3R4_B1.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh AK3R4_B1.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.541648
echo AK3R5_B2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh AK3R5_B2.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.449744
echo AK3R6_B3.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh AK3R6_B3.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.302319