#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing22816987 reads
echo IPR27-FixedA.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh IPR27-FixedA.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.944406
echo IPR28-FixedB.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh IPR28-FixedB.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.940855
echo IPR29-NGSFixed.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh IPR29-NGSFixed.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.907722
echo IPR24-LIVE.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh IPR24-LIVE.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo IPR25-fINV2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh IPR25-fINV2.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.794906
echo IPR26-INV1.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh IPR26-INV1.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.838891