#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing1338562 reads
ln -s . dm6
echo YA3R1-Byn1.bam
#/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh YA3R1-Byn1.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo YA3R2-Byn2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh YA3R2-Byn2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.411535
echo YA3R3-Byn3.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh YA3R3-Byn3.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.907432
echo YA3R4-BynRas1.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh YA3R4-BynRas1.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.528464
echo YA3R5-BynRas2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh YA3R5-BynRas2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.630394
echo YA3R6-BynRas3.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh YA3R6-BynRas3.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.475425