samplename filename condition paired stranded VK261-2_CNTR_treated /home/reczko/bak/doc/fleming/kolliarakis/VKlab/run514/VK261-2_CNTR_treated.bam Ctrl_tr single yes VK283-2_CNTR_treated /home/reczko/bak/doc/fleming/kolliarakis/VKlab/run514/VK283-2_CNTR_treated.bam Ctrl_tr single yes VK285-288_CNTR_treated /home/reczko/bak/doc/fleming/kolliarakis/VKlab/run514/VK285-288_CNTR_treated.bam Ctrl_tr single yes VK261-5_Cre_treated /home/reczko/bak/doc/fleming/kolliarakis/VKlab/run514/VK261-5_Cre_treated.bam Cre_tr single yes VK272-3_Cre_treated /home/reczko/bak/doc/fleming/kolliarakis/VKlab/run514/VK272-3_Cre_treated.bam Cre_tr single yes VK343-4_CNTR_untreated /home/reczko/bak/doc/fleming/kolliarakis/VKlab/run514/VK343-4_CNTR_untreated.bam Ctrl_untr single yes VK343-5_CNTR_untreated /home/reczko/bak/doc/fleming/kolliarakis/VKlab/run514/VK343-5_CNTR_untreated.bam Ctrl_untr single yes VK348-3_CNTR_untreated /home/reczko/bak/doc/fleming/kolliarakis/VKlab/run514/VK348-3_CNTR_untreated.bam Ctrl_untr single yes