#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing30408869 reads
ln -s . mm10
echo GSR13_KPM3.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh GSR13_KPM3.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.699378
echo GSR14_KPM4.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh GSR14_KPM4.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.63059
echo GSR11_wt1.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh GSR11_wt1.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.556042
echo GSR12_KPM1.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh GSR12_KPM1.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 1