./all_Apis.sh: line 1: /home/reczko/Elixir/metagenomics/species/hisat/Apis_mellifera: No such file or directory
SPD3_Apis.bam
8160732 reads; of these:
  8160732 (100.00%) were unpaired; of these:
    8147679 (99.84%) aligned 0 times
    13053 (0.16%) aligned exactly 1 time
    0 (0.00%) aligned >1 times
0.16% overall alignment rate
SPD4_fragDNA2.IonXpress_032.Apis.bam
1444924 reads; of these:
  1444924 (100.00%) were unpaired; of these:
    1436453 (99.41%) aligned 0 times
    8471 (0.59%) aligned exactly 1 time
    0 (0.00%) aligned >1 times
0.59% overall alignment rate
SPD10_DSM-H7.IonXpress_010.Apis.bam
2280627 reads; of these:
  2280627 (100.00%) were unpaired; of these:
    2275531 (99.78%) aligned 0 times
    5096 (0.22%) aligned exactly 1 time
    0 (0.00%) aligned >1 times
0.22% overall alignment rate
SPD5_shot-H4.IonXpress_005.Apis.bam
4058520 reads; of these:
  4058520 (100.00%) were unpaired; of these:
    4050874 (99.81%) aligned 0 times
    7646 (0.19%) aligned exactly 1 time
    0 (0.00%) aligned >1 times
0.19% overall alignment rate
SPD6_shot-H6.IonXpress_006.Apis.bam
3619844 reads; of these:
  3619844 (100.00%) were unpaired; of these:
    3610509 (99.74%) aligned 0 times
    9335 (0.26%) aligned exactly 1 time
    0 (0.00%) aligned >1 times
0.26% overall alignment rate
SPD7_shot-H7.IonXpress_007.Apis.bam
2038989 reads; of these:
  2038989 (100.00%) were unpaired; of these:
    2036714 (99.89%) aligned 0 times
    2275 (0.11%) aligned exactly 1 time
    0 (0.00%) aligned >1 times
0.11% overall alignment rate
SPD8_DSM-H4.IonXpress_008.Apis.bam
3282782 reads; of these:
  3282782 (100.00%) were unpaired; of these:
    3277108 (99.83%) aligned 0 times
    5674 (0.17%) aligned exactly 1 time
    0 (0.00%) aligned >1 times
0.17% overall alignment rate
SPD9_DSM-H6.IonXpress_009.Apis.bam
2379244 reads; of these:
  2379244 (100.00%) were unpaired; of these:
    2372232 (99.71%) aligned 0 times
    7012 (0.29%) aligned exactly 1 time
    0 (0.00%) aligned >1 times
0.29% overall alignment rate