time ../diamond/diamond blastx -p 20 --max-target-seqs 1 --evalue 1e-20 -c 2 -b5.0  --frameshift 15 --range-culling  -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD10_DSM-H7.IonXpress_010.fastq -f 6 sseq evalue mismatch pident stitle staxids  -o ../SPlab/run440/evalue_1e-20/r440SPD10_DSM-H7-matches-longreads-top10.f100.eval1e-20.aligned-prot.txt -t temp1

sseq means Aligned part of subject sequence
evalue means Expect value
mismatch means Number of mismatches
pident means Percentage of identical matches
stitle means Subject Title
staxids means unique Subject Taxonomy ID(s), separated by a ';' (in numerical order)

time ../diamond/diamond blastx -p 20 --max-target-seqs 1 --evalue 1e-20 -c 2 -b5.0  --frameshift 15 --range-culling  -d nr -q /data/images/proton2/run431/R_2019_08_07_16_07_46_user_IONAS-431-GKlab-MS_SPlab_190807_GK3R288-302_SP3R1-4.SPD3_fragDNA1.IonXpress_031.fastq -f 6  sseq evalue mismatch pident stitle staxids -o ../SPlab/run440/evalue_1e-20/r431SPD3matches-longreads-top10.f100.eval1e-20.aligned-prot.txt -t temp2


time ../diamond/diamond blastx -p 20 --evalue 1e-20 -c 2 -b5.0  --frameshift 15 --range-culling --max-target-seqs 1  -d nr -q /data/images/proton2/run431/R_2019_08_07_16_07_46_user_IONAS-431-GKlab-MS_SPlab_190807_GK3R288-302_SP3R1-4.SPD4_fragDNA2.IonXpress_032.fastq -f 6  sseq evalue mismatch pident stitle staxids  -o ../SPlab/run440/evalue_1e-20/r431SPD4matches-longreads-top10.f100.eval1e-20.aligned-prot.txt -t temp1


time ../diamond/diamond blastx -p 20 --evalue 1e-20 -c 2 -b5.0  --frameshift 15 --range-culling --max-target-seqs 1  -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD5_shot-H4.IonXpress_005.fastq -f 6  sseq evalue mismatch pident stitle staxids  -o ../SPlab/run440/evalue_1e-20/r440SPD5_shot-H4-matches-longreads-top10.f100.eval1e-20.aligned-prot.txt -t temp1


time ../diamond/diamond blastx -p 20 --evalue 1e-20 -c 2 -b5.0  --frameshift 15 --range-culling --max-target-seqs 1  -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD6_shot-H6.IonXpress_006.fastq -f 6  sseq evalue mismatch pident stitle staxids  -o ../SPlab/run440/evalue_1e-20/r440SPD6_shot-H6-matches-longreads-top10.f100.eval1e-20.aligned-prot.txt -t temp1


time ../diamond/diamond blastx -p 20 --evalue 1e-20 -c 2 -b5.0  --frameshift 15 --range-culling --max-target-seqs 1  -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD7_shot-H7.IonXpress_007.fastq -f 6  sseq evalue mismatch pident stitle staxids  -o ../SPlab/run440/evalue_1e-20/r440SPD7_shot-H7-matches-longreads-top10.f100.eval1e-20.aligned-prot.txt -t temp1


time ../diamond/diamond blastx -p 20 --evalue 1e-20 -c 2 -b5.0  --frameshift 15 --range-culling --max-target-seqs 1  -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD8_DSM-H4.IonXpress_008.fastq -f 6  sseq evalue mismatch pident stitle staxids  -o ../SPlab/run440/evalue_1e-20/r440SPD8_DSM-H4-matches-longreads-top10.f100.eval1e-20.aligned-prot.txt -t temp1

time ../diamond/diamond blastx -p 20 --evalue 1e-20 -c 2 -b5.0  --frameshift 15 --range-culling --max-target-seqs 1  -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD9_DSM-H6.IonXpress_009.fastq -f 6  sseq evalue mismatch pident stitle staxids  -o ../SPlab/run440/evalue_1e-20/r440SPD9_DSM-H6-matches-longreads-top10.f100.eval1e-20.aligned-prot.txt -t temp1

(-f 6 qseq sseq evalue mismatch pident stitle staxids  salltitles
qseq means Aligned part of query sequence
sseq means Aligned part of subject sequence
evalue means Expect value
mismatch means Number of mismatches
pident means Percentage of identical matches
stitle means Subject Title
staxids means unique Subject Taxonomy ID(s), separated by a ';' (in numerical order)
salltitles All Subject Title(s), separated by a ’<>’
)