time ../diamond/diamond blastx --evalue 5e-6 -c 2 -b5.0  --frameshift 15 --range-culling --top 10 -d nr -q /data/images/proton2/run431/R_2019_08_07_16_07_46_user_IONAS-431-GKlab-MS_SPlab_190807_GK3R288-302_SP3R1-4.SPD3_fragDNA1.IonXpress_031.fastq -f 100 -o r431SPD3matches-longreads-top10.f0.eval5e-6.daa -t temp1

time ../diamond/diamond blastx --evalue 5e-6 -c 2 -b5.0  --frameshift 15 --range-culling --top 10 -d nr -q /data/images/proton2/run431/R_2019_08_07_16_07_46_user_IONAS-431-GKlab-MS_SPlab_190807_GK3R288-302_SP3R1-4.SPD4_fragDNA2.IonXpress_032.fastq -f 100 -o r431SPD4matches-longreads-top10.f0.eval5e-6.daa -t temp1



time ../diamond/diamond blastx --evalue 5e-6 -c 2 -b5.0  --frameshift 15 --range-culling --top 10 -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD10_DSM-H7.IonXpress_010.fastq -f 100 -o r440SPD10_DSM-H7-matches-longreads-top10.f0.eval5e-6.daa -t temp1


time ../diamond/diamond blastx --evalue 5e-6 -c 2 -b5.0  --frameshift 15 --range-culling --top 10 -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD5_shot-H4.IonXpress_005.fastq -f 100 -o r440SPD5_shot-H4-matches-longreads-top10.f0.eval5e-6.daa -t temp1

time ../diamond/diamond blastx --evalue 5e-6 -c 2 -b5.0  --frameshift 15 --range-culling --top 10 -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD6_shot-H6.IonXpress_006.fastq -f 100 -o r440SPD6_shot-H6-matches-longreads-top10.f0.eval5e-6.daa -t temp1


time ../diamond/diamond blastx --evalue 5e-6 -c 2 -b5.0  --frameshift 15 --range-culling --top 10 -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD7_shot-H7.IonXpress_007.fastq -f 100 -o r440SPD7_shot-H7-matches-longreads-top10.f0.eval5e-6.daa -t temp1

time ../diamond/diamond blastx --evalue 5e-6 -c 2 -b5.0  --frameshift 15 --range-culling --top 10 -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD8_DSM-H4.IonXpress_008.fastq -f 100 -o r440SPD8_DSM-H4-matches-longreads-top10.f0.eval5e-6.daa -t temp1

time ../diamond/diamond blastx --evalue 5e-6 -c 2 -b5.0  --frameshift 15 --range-culling --top 10 -d nr -q /data/images/proton2/run440/R_2020_02_12_12_23_36_user_IONAS-440-PMN-SPlab-DrMylonis_200212_PMNcAmp2-6_SPD5-10_IM3R7-10.SPD9_DSM-H6.IonXpress_009.fastq -f 100 -o r440SPD9_DSM-H6-matches-longreads-top10.f0.eval5e-6.daa -t temp1

# move diamond alignments 
cd ~/Elixir/metagenomics/SPlab/run440

mv ../../nr/r431SPD4matches-longreads-top10.f0.eval5e-6.daa r431SPD4matches-longreads-top10.f100.eval5e-6.daa
mv ../../nr/r431SPD3matches-longreads-top10.f0.eval5e-6.daa r431SPD3matches-longreads-top10.f100.eval5e-6.daa
mv ../../nr/r440SPD5_shot-H4-matches-longreads-top10.f0.eval5e-6.daa r440SPD5_shot-H4-matches-longreads-top10.f100.eval5e-6.daa
mv ../../nr/r440SPD6_shot-H6-matches-longreads-top10.f0.eval5e-6.daa r440SPD6_shot-H6-matches-longreads-top10.f100.eval5e-6.daa
mv ../../nr/r440SPD7_shot-H7-matches-longreads-top10.f0.eval5e-6.daa r440SPD7_shot-H7-matches-longreads-top10.f100.eval5e-6.daa
mv ../../nr/r440SPD8_DSM-H4-matches-longreads-top10.f0.eval5e-6.daa r440SPD8_DSM-H4-matches-longreads-top10.f100.eval5e-6.daa
mv ../../nr/r440SPD9_DSM-H6-matches-longreads-top10.f0.eval5e-6.daa r440SPD9_DSM-H6-matches-longreads-top10.f100.eval5e-6.daa
mv ../../nr/r440SPD10_DSM-H7-matches-longreads-top10.f0.eval5e-6.daa r440SPD10_DSM-H7-matches-longreads-top10.f100.eval5e-6.daa