samtools view SPD3_vitis_vinifera.bam > foo QHOT2:04817:06449 16 NC_012008.3 18715236 60 150M * 0 0 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG <<:4;;>>=8=<:664<9=><7;<=<=9@C==>=<=<=9>>=<<9===8>==;9<<3@;3========8====8=9=:6;;;7<5?8585;;;==9=9==;7;;>A===<<<;3;::;;;;5?9188<<;;781995<<5>====== AS:i:-24 XN:i:0 XM:i:6 XO:i:0 XG:i:0 NM:i:6 MD:Z:28A42C14T17A11A16A16 YT:Z:UU NH:i:1 Cotoneaster rubens voucher PE6670 external transcribed spacer 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S large subunit ribosomal RNA gene, complete sequence Sequence ID: MN577931.1Length: 6333Number of Matches: 1 Range 1: 5274 to 5423GenBankGraphics Next Match Previous Match Alignment statistics for match #1 Score Expect Identities Gaps Strand 278 bits(150) 6e-71 150/150(100%) 0/150(0%) Plus/Minus QHOT2:05369:06171 16 NC_012119.1 542657 60 3S250M * 0 0 AGGTACATTGCAACAAATCTTCTTTTTCTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAACGAAAGTCAAAAGACCTCTAGCTCATAGTTCGATTGGACATGTAGGTTATATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACTAATTGGTATATTTATTTATGCATCAATGACGATAGATGCATTCGCCATAGTTCCAGCATTACGGCAAACCCGTGTC :7;:<;7177:4991?<;:599,;;;<;<::77...<>>7>>?888>=<7<<8@@===774947738--)4/8817776(65688.:::;;8===>=<=;;---4/<8<<6=6:;:8566=8=7<=<<8=======9=7======<=:5:5=9=====8;6;4<8<<6<<::899;;4<7<7<<=<;5>=<5@>;;;;<::5;;<<<<<=<=A;>==9@?=9><<<<9=9CC>><9=<;5783<=7AC>;=>= AS:i:-28 ZS:i:-43 XN:i:0 XM:i:6 XO:i:0 XG:i:0 NM:i:6 MD:Z:81A23A32A44C42T0T22 YT:Z:UU NH:i:1 Allium cepa Normal mitochondrial DNA, complete sequence Sequence ID: AP018390.1Length: 536617Number of Matches: 2 Range 1: 191121 to 191370GenBankGraphics Next Match Previous Match Alignment statistics for match #1 Score Expect Identities Gaps Strand 462 bits(250) 3e-126 250/250(100%) 0/250(0%) Plus/Plus QHOT2:00267:05560 16 NC_012119.1 206743 60 254M * 0 0 CCGAAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCAGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGG 695/55546666.).)94744/5)5555550;79:543:777:39;;3::995955583427773333-335577.776---60661:892955---1665168899299961733/<;9934479975833+9-)-)788:555;<<=>=<2===8@<;;993;;;;<<949998..*::6995@@=<9733-87755-<996<<2;:;:83993:57/76;;,;:;6/4/888/)//73764788;::=818 AS:i:-15 ZS:i:-16 XN:i:0 XM:i:4 XO:i:0 XG:i:0 NM:i:4 MD:Z:3G58G19A63G107 YT:Z:UU NH:i:1 Malus x domestica mitchondrial complete genome, cultivar Golden delicious Sequence ID: FR714868.1Length: 396947Number of Matches: 1 Range 1: 276012 to 276265GenBankGraphics Next Match Previous Match Alignment statistics for match #1 Score Expect Identities Gaps Strand 470 bits(254) 2e-128 254/254(100%) 0/254(0%) Plus/Plus QHOT2:09770:06054 16 NC_012008.3 18715228 60 253M * 0 0 CTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA :4;;>8>>8888;::>=9==C<;6=>=>:4:::>=9==?==>==?=9=<><=7@?=7AA==9==8==7===<<<=<7<<<<8=9>>9>=<8;4;;6>9=>?<<8=8><=?;;5<::;0//<79;4<<<;46629948881345:4::5::4668==999::7544.533337;:333636663::5<5355936066;;:::;;<<<6555828886:5*557+888:<<8>9>9@<9<7?<<6;;95*9886 AS:i:-49 XN:i:0 XM:i:13 XO:i:0 XG:i:0 NM:i:13 MD:Z:36A42C14T17A11A16A17A16A36T1A9T2A13T10 YT:Z:UU NH:i:1 PREDICTED: Cucumis sativus 28S ribosomal RNA (LOC116402279), rRNA Sequence ID: XR_004214793.1Length: 3324Number of Matches: 1 Range 1: 2215 to 2467GenBankGraphics Next Match Previous Match Alignment statistics for match #1 Score Expect Identities Gaps Strand 468 bits(253) 6e-128 253/253(100%) 0/253(0%) Plus/Minus QHOT2:04130:12203 16 NC_012119.1 610535 60 252M * 0 0 CCTTTTTAGTGCTAGCTGAACGGAAAGTCATGGCTTTTGTTCAACGTCGAAAGGGTCCTGATGTAGTGGGTTCGTTCGGATTGTTACAACCTATAGCAGATGGTTCGAAATTGATTCTAAAGGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTCATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAACA 5;-><<.--79;:766<=69928.88555993;9.99771--)53444-(--&764,54655.--96/693<::7<70777<<8:::9=9<<>=<<<::::5:4<<<5<<98889<<;4;9494938882888:7:7:::9778//*91?;;8*99*<<<<<;5;<9<<>9><=<9<<:::<8<<<=:5:6<<<<;6;;<=<<=8==9==9><<<8?3B@=<<7>>>9>==<89553<<>>><<;8;<6<<8 AS:i:-28 ZS:i:-49 XN:i:0 XM:i:8 XO:i:0 XG:i:0 NM:i:8 MD:Z:22T5A11G29A21C28A23A38T67 YT:Z:UU NH:i:1 Liriodendron tulipifera mitochondrion, complete genome Sequence ID: MK340747.1Length: 551806Number of Matches: 1 Range 1: 173116 to 173367GenBankGraphics Next Match Previous Match Alignment statistics for match #1 Score Expect Identities Gaps Strand 427 bits(231) 1e-115 245/252(97%) 0/252(0%) Plus/Minus