#!/bin/bash
declare -A MCR

MCR[ PHC26_LGR5Con_odd.bam ]=14103719
MCR[ PHC27_even.bam ]=14122858
MCR[ PHC28LacZ.bam ]=13912072
MCR[ PHC30_linclGSF9Dox_odd.bam ]=13815379
MCR[ PHC31_even.bam ]=16637810
MCR[ PHC32_beads.bam ]=15070369


let min=9999999999;
for i in P*bam
do
if [ ${MCR[ $i ]} -le $min ]; then let min=${MCR[ $i ]}; fi
done
echo "Sampling to smallest library containing" $min " reads"

for i in P*bam
do
sc=$(echo "scale=15; $min/${MCR[ $i ]}" | bc) 
echo $i ${MCR[ $i ]} $sc
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh $i /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome $sc
done