#!/bin/bash
declare -A MCR

MCR[ PHC34-lncPRDM16-LsBcatCon-odd.bam ]=8126666
MCR[ PHC35-lncPRDM16-LsBcatCon-even.bam ]=11844194
MCR[ PHC36-LacZ.bam ]=8013648
MCR[ PHC38-ASCL2-76-odd.bam ]=12286426
MCR[ PHC39-ASCL2-76-even.bam ]=9157533
MCR[ PHC40-ASCL2-76-beads.bam ]=9083524


let min=9999999999;
for i in P*bam
do
if [ ${MCR[ $i ]} -le $min ]; then let min=${MCR[ $i ]}; fi
done
echo "Sampling to smallest library containing" $min " reads"

for i in P*bam
do
sc=$(echo "scale=15; $min/${MCR[ $i ]}" | bc) 
echo $i ${MCR[ $i ]} $sc
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh $i /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome $sc
done