#!/bin/bash
declare -A MCR

MCR[ INPUTcon.bam ]=13168331
MCR[ INPUTdox.bam ]=15226585
MCR[ BPcon.bam ]=25561540
MCR[ BPdox.bam ]=20682859


for i in *bam
do
sc=$(echo "scale=9; 1000000.0/${MCR[ $i ]}" | bc) 
echo $i ${MCR[ $i ]} $sc
/data/results/tools/proton/tophat2unstranded-scaled-bigwig1.sh $i /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome $sc
done