#!/bin/bash
declare -A MCR

MCR[ PIIcon.bam ]=15517983
MCR[ PIIdox.bam ]=34607210
MCR[ TCcon.bam ]=6779109
MCR[ TCdox.bam ]=14026819


for i in *bam
do
sc=$(echo "scale=9; 1000000.0/${MCR[ $i ]}" | bc) 
echo $i ${MCR[ $i ]} $sc
/data/results/tools/proton/tophat2unstranded-scaled-bigwig1.sh $i /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome $sc
done