#!/bin/bash
declare -A MCR

MCR[ PIIcon.bam ]=15517983
MCR[ PIIdox.bam ]=34607210
MCR[ TCcon.bam ]=6779109
MCR[ TCdox.bam ]=14026819
MCR[ TCF4.bam ]=24379405

let min=9999999999;
for i in *bam
do
if [ ${MCR[ $i ]} -le $min ]; then let min=${MCR[ $i ]}; fi
done
echo "Sampling to smallest library containing" $min " reads"

for i in *bam
do
sc=$(echo "scale=15; $min/${MCR[ $i ]}" | bc) 
echo $i ${MCR[ $i ]} $sc
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh $i /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome $sc
done