#!/bin/bash
declare -A MCR

MCR[ 005-bt2.bam ]=12689650
MCR[ 006-bt2.bam ]=6049083	
MCR[ 007-bt2.bam ]=12484193
MCR[ 008-bt2.bam ]=3375646	


for i in *bam
do
sc=$(echo "scale=9; 1000000.0/${MCR[ $i ]}" | bc) 
echo $i ${MCR[ $i ]} $sc
/data/results/tools/proton/tophat2unstranded-scaled-bigwig1.sh $i /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome $sc
done