/data/results/tools/proton/tophat2stranded-bigwig1.sh con1.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 
/data/results/tools/proton/tophat2stranded-bigwig1.sh con2.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 
/data/results/tools/proton/tophat2stranded-bigwig1.sh dox1.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 
/data/results/tools/proton/tophat2stranded-bigwig1.sh dox2.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome